mRNA_H-elongata_contig101607.137.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE) HSP 1 Score: 194 bits (494), Expect = 7.130e-55 Identity = 97/181 (53.59%), Postives = 126/181 (69.61%), Query Frame = 1 Query: 16 GVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAKGGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 537
GVA+ + + RRLGH+N R+M LL +K+ +V+++ MT CDICA++KS Q HPK T R+TT PM L+Y D+MG TP+AKGG Y+S F D +SR+KEI+LL++K ET +LH YNM + PLG IE IRCD+G EN + GI ++Y ATNTPQQNGVSERDGQTL
Sbjct: 97 GVAFATTVNANTPHRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSRETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLLKAKSETVRALHAYNMQVAAPLGRGIEIIRCDRGRENVANEFTTYCMDSGITIEYAATNTPQQNGVSERDGQTL 277
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE) HSP 1 Score: 195 bits (495), Expect = 8.120e-55 Identity = 98/181 (54.14%), Postives = 126/181 (69.61%), Query Frame = 1 Query: 16 GVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAKGGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 537
GVA A + + W R L H+N R+M+LL +K+ V+++ MT CDICA++KSRQ HP+ T R+TT PM+L+Y D MG TP+AKGG Y+SKFTD +S MKEI+LL++ ET +LH YNM + PLG RIE IRC+ GGEN + I ++Y ATNTPQQNGVSERDGQTL
Sbjct: 299 GVACAATVNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAYNMQVAAPLGRRIEIIRCESGGENVANEFTKYFMDSDITIEYAATNTPQQNGVSERDGQTL 479
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE) HSP 1 Score: 177 bits (448), Expect = 9.520e-53 Identity = 87/186 (46.77%), Postives = 117/186 (62.90%), Query Frame = 1 Query: 10 TPGVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAK---GGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 537
T S D W RRLGH+N R++D+L + GT V+Y ++ C +C + K +Q PHPK + R+ ++P +L+ +D MGP+ P AK G Y K TDD+++MKE++LLR K +T E++H YNM + G RIE IRCDKGGENT N I ++Y ATNTPQQ GVSE DGQTL
Sbjct: 31 TANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSEGDGQTL 216
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE) HSP 1 Score: 179 bits (455), Expect = 1.720e-50 Identity = 88/186 (47.31%), Postives = 118/186 (63.44%), Query Frame = 1 Query: 10 TPGVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAK---GGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 537
T S D W RRLGH+N R++D+L + GT V+Y ++ C +C + K +Q PHPK + R+ ++P +L+ +D MGP+ P AK G Y K TDD+++MKE++LLR K +T E++H YNM + G RIE IRCDKGGENT N I ++Y ATNTPQQ GVSERDGQTL
Sbjct: 31 TANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTL 216
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE) HSP 1 Score: 180 bits (457), Expect = 2.760e-50 Identity = 88/186 (47.31%), Postives = 119/186 (63.98%), Query Frame = 1 Query: 10 TPGVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAK---GGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 537
T S D W RRLGH+N R++D+L + GT+V+Y ++ C +C + K +Q PHPK + R+ ++P +L+ +D MGP+ P AK G Y K TDD+++MKE++LLR K +T E++H YNM + G RIE IRCDKGGENT N I ++Y ATNTPQQ GVSERDGQTL
Sbjct: 355 TANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 540
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE) HSP 1 Score: 179 bits (455), Expect = 2.180e-49 Identity = 88/186 (47.31%), Postives = 118/186 (63.44%), Query Frame = 1 Query: 10 TPGVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAK---GGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 537
T S D W RRLGH+N R++D+L + GT V+Y ++ C +C + K +Q PHPK + R+ ++P +L+ +D MGP+ P AK G Y K TDD+++MKE++LLR K +T E++H YNM + G RIE IRCDKGGENT N I ++Y ATNTPQQ GVSERDGQTL
Sbjct: 31 TANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 216
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE) HSP 1 Score: 178 bits (451), Expect = 3.680e-49 Identity = 87/186 (46.77%), Postives = 117/186 (62.90%), Query Frame = 1 Query: 10 TPGVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAK---GGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 537
T S D W RRLGH+N R++D+L + GT V+Y ++ C +C + K +Q PHPK + R+ ++P +L+ +D MGP+ P AK G Y K TDD+++MKE++LLR K +T E++H YNM + G RIE IRCDKGGENT N I ++Y ATNTPQQ G SERDGQTL
Sbjct: 407 TANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTL 592
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE) HSP 1 Score: 179 bits (455), Expect = 5.240e-49 Identity = 88/186 (47.31%), Postives = 118/186 (63.44%), Query Frame = 1 Query: 10 TPGVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAK---GGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 537
T S D W RRLGH+N R++D+L + GT V+Y ++ C +C + K +Q PHPK + R+ ++P +L+ +D MGP+ P AK G Y K TDD+++MKE++LLR K +T E++H YNM + G RIE IRCDKGGENT N I ++Y ATNTPQQ GVSERDGQTL
Sbjct: 31 TANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 216
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE) HSP 1 Score: 179 bits (455), Expect = 5.370e-49 Identity = 88/186 (47.31%), Postives = 118/186 (63.44%), Query Frame = 1 Query: 10 TPGVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAK---GGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 537
T S D W RRLGH+N R++D+L + GT V+Y ++ C +C + K +Q PHPK + R+ ++P +L+ +D MGP+ P AK G Y K TDD+++MKE++LLR K +T E++H YNM + G RIE IRCDKGGENT N I ++Y ATNTPQQ GVSERDGQTL
Sbjct: 31 TANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 216
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE) HSP 1 Score: 177 bits (448), Expect = 2.900e-48 Identity = 87/186 (46.77%), Postives = 117/186 (62.90%), Query Frame = 1 Query: 10 TPGVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAK---GGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 537
T S D W RRLGH+N R++D+L + GT V+Y ++ C +C + K +Q PHPK + R+ ++P +L+ +D MGP+ P AK G Y K TDD+++MKE++LLR K +T E++H YNM + G RIE IRCDKGGENT N I ++Y ATNTPQQ G SERDGQTL
Sbjct: 31 TANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGGSERDGQTL 216 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101607.137.1 >prot_H-elongata_contig101607.137.1 ID=prot_H-elongata_contig101607.137.1|Name=mRNA_H-elongata_contig101607.137.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp DDATPGVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCback to top mRNA from alignment at H-elongata_contig101607:1748..2284- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101607.137.1 ID=mRNA_H-elongata_contig101607.137.1|Name=mRNA_H-elongata_contig101607.137.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=537bp|location=Sequence derived from alignment at H-elongata_contig101607:1748..2284- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101607:1748..2284- >mRNA_H-elongata_contig101607.137.1 ID=mRNA_H-elongata_contig101607.137.1|Name=mRNA_H-elongata_contig101607.137.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig101607:1748..2284- (Himanthalia elongata Himel1 dioecious)back to top |