mRNA_H-elongata_contig99950.17307.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig99950.17307.1 vs. uniprot
Match: A0A6H5KIE7_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE7_9PHAE) HSP 1 Score: 265 bits (678), Expect = 8.360e-86 Identity = 134/181 (74.03%), Postives = 152/181 (83.98%), Query Frame = 1
Query: 1 YKTEMVARLADLIEDWDTVRARKIRRGCRGLSDAGQATMLDVTEILSEKWGSFSAQTVIRCWLKADILPREHCNLLKSMDTRLDREDKDEKGVIDDLCDLVKKMSMPTSVEGSADSRSTPRVLTDNLCVEKGAGLSEQDLRQAFQTWLTVEDDPNVKEDEVALELQEVEKDMAGLQVDDDV 543
YKTEMVARLADLIEDWDTVRARK +RGC+GLSDAGQATMLDVTEI S+KW SF QTVI CWLKA ILPREHCN+LK MDTR+DREDKD+ +ID LCD+V KM+MP SV G RS PRVLTDNL VEKG L+EQ++R A +TWLTVEDDP V E+EV LEL VE+D+AGL++DDDV
Sbjct: 124 YKTEMVARLADLIEDWDTVRARKFQRGCQGLSDAGQATMLDVTEIGSQKWRSFDVQTVITCWLKAGILPREHCNVLKGMDTRVDREDKDDAAIIDGLCDMVSKMAMPASVTGY---RSMPRVLTDNLLVEKGTDLTEQEVRTAVKTWLTVEDDPEVLEEEVELELHAVERDIAGLEMDDDV 301
BLAST of mRNA_H-elongata_contig99950.17307.1 vs. uniprot
Match: A0A6H5JNS8_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS8_9PHAE) HSP 1 Score: 270 bits (689), Expect = 9.490e-85 Identity = 136/181 (75.14%), Postives = 152/181 (83.98%), Query Frame = 1
Query: 1 YKTEMVARLADLIEDWDTVRARKIRRGCRGLSDAGQATMLDVTEILSEKWGSFSAQTVIRCWLKADILPREHCNLLKSMDTRLDREDKDEKGVIDDLCDLVKKMSMPTSVEGSADSRSTPRVLTDNLCVEKGAGLSEQDLRQAFQTWLTVEDDPNVKEDEVALELQEVEKDMAGLQVDDDV 543
YKTEMVARLADLIEDWDTVRARKI+RGCRGLSDAGQATMLDVTEI S+KW SF QTVIRCWLKA ILPREHC +LK MDTRLDREDKD+ +ID LCD+ KMSMP SV D RS PRVLTDNL VEKG L+EQ++R A +TWLTVEDDP V ++EV LELQ V++D+AGL+ DDDV
Sbjct: 327 YKTEMVARLADLIEDWDTVRARKIQRGCRGLSDAGQATMLDVTEICSQKWRSFDVQTVIRCWLKAGILPREHCKVLKGMDTRLDREDKDDAAIIDGLCDMATKMSMPASV---TDCRSMPRVLTDNLFVEKGTDLTEQEVRTAVKTWLTVEDDPEVLKEEVELELQAVDRDLAGLETDDDV 504
BLAST of mRNA_H-elongata_contig99950.17307.1 vs. uniprot
Match: A0A6H5KXD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXD1_9PHAE) HSP 1 Score: 259 bits (661), Expect = 2.190e-84 Identity = 132/181 (72.93%), Postives = 149/181 (82.32%), Query Frame = 1
Query: 1 YKTEMVARLADLIEDWDTVRARKIRRGCRGLSDAGQATMLDVTEILSEKWGSFSAQTVIRCWLKADILPREHCNLLKSMDTRLDREDKDEKGVIDDLCDLVKKMSMPTSVEGSADSRSTPRVLTDNLCVEKGAGLSEQDLRQAFQTWLTVEDDPNVKEDEVALELQEVEKDMAGLQVDDDV 543
YKTEMV RLADLIEDWDTVRARKI+ CRGL+DAGQATMLDVTEI S+KW SF QTVIRCWLKA ILPREHCN+LK MDTRLDREDKD ++D LCD+V KMSMP SV DSRS R LTD+L VEKG L+EQ++R A +TWLTVEDDP V E+EV LELQ VE+D+AGL+ DDD+
Sbjct: 13 YKTEMVERLADLIEDWDTVRARKIQGECRGLNDAGQATMLDVTEICSQKWRSFDVQTVIRCWLKAGILPREHCNVLKCMDTRLDREDKDNVAIVDGLCDMVSKMSMPASV---TDSRSMLRGLTDDLFVEKGTDLTEQEVRTAVKTWLTVEDDPEVLEEEVELELQAVERDLAGLETDDDI 190
BLAST of mRNA_H-elongata_contig99950.17307.1 vs. uniprot
Match: A0A6H5JEY2_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY2_9PHAE) HSP 1 Score: 261 bits (666), Expect = 9.540e-82 Identity = 131/181 (72.38%), Postives = 156/181 (86.19%), Query Frame = 1
Query: 1 YKTEMVARLADLIEDWDTVRARKIRRGCRGLSDAGQATMLDVTEILSEKWGSFSAQTVIRCWLKADILPREHCNLLKSMDTRLDREDKDEKGVIDDLCDLVKKMSMPTSVEGSADSRSTPRVLTDNLCVEKGAGLSEQDLRQAFQTWLTVEDDPNVKEDEVALELQEVEKDMAGLQVDDDV 543
YKTEMVARLADLI+ WD VRARKIRRGCRGL+DAGQATMLDVTEILSEKW SFS+QTVIRCWLKA+ILPREH N LK DTRLDREDK++ +IDDLC++V KMSMP S + DSRST RVLTDNL VEK +GL++ ++RQA +TWL+VEDDP V E+E+A+ELQ V++ +AG+ +DDDV
Sbjct: 290 YKTEMVARLADLIDVWDAVRARKIRRGCRGLNDAGQATMLDVTEILSEKWESFSSQTVIRCWLKANILPREHENALKGKDTRLDREDKEDTAIIDDLCEMVSKMSMPAS---ATDSRSTARVLTDNLFVEKASGLTDAEVRQAVKTWLSVEDDPEVLEEEIAMELQAVDEQLAGVTLDDDV 467
BLAST of mRNA_H-elongata_contig99950.17307.1 vs. uniprot
Match: A0A6H5JV64_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV64_9PHAE) HSP 1 Score: 261 bits (666), Expect = 1.820e-80 Identity = 131/181 (72.38%), Postives = 156/181 (86.19%), Query Frame = 1
Query: 1 YKTEMVARLADLIEDWDTVRARKIRRGCRGLSDAGQATMLDVTEILSEKWGSFSAQTVIRCWLKADILPREHCNLLKSMDTRLDREDKDEKGVIDDLCDLVKKMSMPTSVEGSADSRSTPRVLTDNLCVEKGAGLSEQDLRQAFQTWLTVEDDPNVKEDEVALELQEVEKDMAGLQVDDDV 543
YKTEMVARLADLI+ WD VRARKIRRGCRGL+DAGQATMLDVTEILSEKW SFS+QTVIRCWLKA+ILPREH N LK DTRLDREDK++ +IDDLC++V KMSMP S + DSRST RVLTDNL VEK +GL++ ++RQA +TWL+VEDDP V E+E+A+ELQ V++ +AG+ +DDDV
Sbjct: 495 YKTEMVARLADLIDVWDAVRARKIRRGCRGLNDAGQATMLDVTEILSEKWESFSSQTVIRCWLKANILPREHENALKGKDTRLDREDKEDTAIIDDLCEMVSKMSMPAS---ATDSRSTARVLTDNLFVEKASGLTDAEVRQAVKTWLSVEDDPEVLEEEIAMELQAVDEQLAGVTLDDDV 672
BLAST of mRNA_H-elongata_contig99950.17307.1 vs. uniprot
Match: A0A6H5JSR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR4_9PHAE) HSP 1 Score: 249 bits (635), Expect = 3.550e-73 Identity = 128/181 (70.72%), Postives = 145/181 (80.11%), Query Frame = 1
Query: 1 YKTEMVARLADLIEDWDTVRARKIRRGCRGLSDAGQATMLDVTEILSEKWGSFSAQTVIRCWLKADILPREHCNLLKSMDTRLDREDKDEKGVIDDLCDLVKKMSMPTSVEGSADSRSTPRVLTDNLCVEKGAGLSEQDLRQAFQTWLTVEDDPNVKEDEVALELQEVEKDMAGLQVDDDV 543
YKTEM+ARLADL+EDWDTVRARKI+RGC GLSDA QATMLDVTEI S+KW SF QT IRCWLKA ILPREHCN+LK MDT LDREDKD+ +ID LCD+V MSMP SV D RS PRVLTDNL VEKG L+EQ +R A +TWLTV+DDP V E++V LELQ VE+D+ GL+ DV
Sbjct: 13 YKTEMLARLADLVEDWDTVRARKIQRGCWGLSDARQATMLDVTEIYSQKWRSFDVQTGIRCWLKAGILPREHCNVLKGMDTWLDREDKDDAAIIDGLCDMVSNMSMPASV---MDYRSMPRVLTDNLFVEKGTDLTEQVVRTAVKTWLTVKDDPEVLEEDVELELQAVERDLTGLETGGDV 190
BLAST of mRNA_H-elongata_contig99950.17307.1 vs. uniprot
Match: A0A6H5JUJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ1_9PHAE) HSP 1 Score: 213 bits (543), Expect = 9.740e-67 Identity = 114/181 (62.98%), Postives = 131/181 (72.38%), Query Frame = 1
Query: 1 YKTEMVARLADLIEDWDTVRARKIRRGCRGLSDAGQATMLDVTEILSEKWGSFSAQTVIRCWLKADILPREHCNLLKSMDTRLDREDKDEKGVIDDLCDLVKKMSMPTSVEGSADSRSTPRVLTDNLCVEKGAGLSEQDLRQAFQTWLTVEDDPNVKEDEVALELQEVEKDMAGLQVDDDV 543
Y TEMVARL DLIEDWDT ATMLDVT+I S+KW SF QT+IRCWLKA LP EHCN+ K +DTRLDREDKD+ +ID LCD+V K SMP SV D RS PRVLTDNL VEKG L+EQ++R A +TWLTVEDDP V E+EV LELQ VE+++AGL+VDDDV
Sbjct: 13 YTTEMVARLTDLIEDWDT------------------ATMLDVTDICSQKWRSFDNQTLIRCWLKAGNLPMEHCNIFKGIDTRLDREDKDDAAIIDGLCDMVSKNSMPASV---TDYRSMPRVLTDNLFVEKGTDLTEQEVRTAVKTWLTVEDDPKVLEEEVELELQAVERNLAGLEVDDDV 172
BLAST of mRNA_H-elongata_contig99950.17307.1 vs. uniprot
Match: A0A6H5K0Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y4_9PHAE) HSP 1 Score: 222 bits (566), Expect = 2.350e-66 Identity = 119/181 (65.75%), Postives = 134/181 (74.03%), Query Frame = 1
Query: 1 YKTEMVARLADLIEDWDTVRARKIRRGCRGLSDAGQATMLDVTEILSEKWGSFSAQTVIRCWLKADILPREHCNLLKSMDTRLDREDKDEKGVIDDLCDLVKKMSMPTSVEGSADSRSTPRVLTDNLCVEKGAGLSEQDLRQAFQTWLTVEDDPNVKEDEVALELQEVEKDMAGLQVDDDV 543
YKTEMVARLADL+EDWDT ATMLDVTEI S+KW SF QTVIRCWLKA ILPREHCN+LK MDTRLDREDKD +ID LCD+V KMSMP SV D S PRVLTDNL VE GA L+EQ++R A +TWL+VEDDP V E+ V LELQ VE+D+AGL++DDDV
Sbjct: 404 YKTEMVARLADLMEDWDT------------------ATMLDVTEICSQKWRSFDVQTVIRCWLKAGILPREHCNVLKGMDTRLDREDKDNAAIIDGLCDMVSKMSMPASV---TDHGSMPRVLTDNLFVETGADLTEQEVRTAVKTWLSVEDDPEVFEEAVELELQAVERDLAGLEMDDDV 563
BLAST of mRNA_H-elongata_contig99950.17307.1 vs. uniprot
Match: A0A6H5L2W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W8_9PHAE) HSP 1 Score: 199 bits (506), Expect = 1.100e-61 Identity = 110/181 (60.77%), Postives = 127/181 (70.17%), Query Frame = 1
Query: 1 YKTEMVARLADLIEDWDTVRARKIRRGCRGLSDAGQATMLDVTEILSEKWGSFSAQTVIRCWLKADILPREHCNLLKSMDTRLDREDKDEKGVIDDLCDLVKKMSMPTSVEGSADSRSTPRVLTDNLCVEKGAGLSEQDLRQAFQTWLTVEDDPNVKEDEVALELQEVEKDMAGLQVDDDV 543
YKTEMVARLA+LIEDWDTVRARK++RGCRGLSDAGQATML+VTEI S+KW QTVIRCWLKA ILPRE CN+LK MDTRLDREDKD+ VID LCD+V KMSMP ++TD G+ QD+ V DDP V E+EV LELQ V +D+AG + D+DV
Sbjct: 15 YKTEMVARLAELIEDWDTVRARKVQRGCRGLSDAGQATMLNVTEICSQKWRRLDVQTVIRCWLKAGILPREDCNVLKGMDTRLDREDKDDAAVIDGLCDMVSKMSMPA-------------IVTD---YRAGSPNDGQDVAYG------VGDDPEVLEEEVELELQAVGRDLAGFETDEDV 173
BLAST of mRNA_H-elongata_contig99950.17307.1 vs. uniprot
Match: A0A6H5L8A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8A7_9PHAE) HSP 1 Score: 202 bits (514), Expect = 1.910e-61 Identity = 105/157 (66.88%), Postives = 126/157 (80.25%), Query Frame = 1
Query: 73 RRGCRGLSDAGQATMLDVTEILSEKWGSFSAQTVIRCWLKADILPREHCNLLKSMDTRLDREDKDEKGVIDDLCDLVKKMSMPTSVEGSADSRSTPRVLTDNLCVEKGAGLSEQDLRQAFQTWLTVEDDPNVKEDEVALELQEVEKDMAGLQVDDDV 543
RRGCRGLSDAGQATMLDVTEILS+KW SFS QTV+RCWLKA ILPREH N LK DTRLDREDK E +DDLCD+VKKMS+P S + D+RS PRVL+DNL VE +GL+EQ++R A TWL+VEDD V +EV LE++EV ++M+ + V+DDV
Sbjct: 93 RRGCRGLSDAGQATMLDVTEILSQKWESFSDQTVVRCWLKATILPREHENALKGRDTRLDREDK-EAAALDDLCDMVKKMSLPESAK-DLDARSMPRVLSDNLFVESTSGLTEQEVRSAVSTWLSVEDDEEVLREEVELEMEEVTENMSRVHVEDDV 247 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99950.17307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig99950.17307.1 >prot_H-elongata_contig99950.17307.1 ID=prot_H-elongata_contig99950.17307.1|Name=mRNA_H-elongata_contig99950.17307.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp MVARLADLIEDWDTVRARKIRRGCRGLSDAGQATMLDVTEILSEKWGSFSback to top mRNA from alignment at H-elongata_contig99950:1641..2395+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig99950.17307.1 ID=mRNA_H-elongata_contig99950.17307.1|Name=mRNA_H-elongata_contig99950.17307.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=755bp|location=Sequence derived from alignment at H-elongata_contig99950:1641..2395+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig99950:1641..2395+ >mRNA_H-elongata_contig99950.17307.1 ID=mRNA_H-elongata_contig99950.17307.1|Name=mRNA_H-elongata_contig99950.17307.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at H-elongata_contig99950:1641..2395+ (Himanthalia elongata Himel1 dioecious)back to top |