mRNA_H-elongata_contig9967.17292.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig9967.17292.1 vs. uniprot
Match: A0A6H5JS96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS96_9PHAE) HSP 1 Score: 204 bits (518), Expect = 4.380e-61 Identity = 96/157 (61.15%), Postives = 123/157 (78.34%), Query Frame = 1
Query: 1 RIWTRMFEEMQQGRRKLV-HESFEDWILRFDH-MAAPDWCAKYISERGLDHVQSNHAIFRIVTPTVVVRLLAGINNQQGGNLNWDGRVLPEIDFWQMEVGFEGLVLEHTKLTGLLGETARPVFDDQGHALMRGHDALRGTVEDYRVTDATAIDFALL 465
RIW RM+++M +GRR+L ES E+WIL++DH MAAP WCAKYI+E L +QS+HAIF+I TPTV VRL AG+N Q G LNWDGRVLP+++FWQM VG +GL +++ L+GLLGETARPV+D+ G +M G DA RGT+EDYRV+DA + F LL
Sbjct: 249 RIWARMYQDMIEGRRELHGDESLEEWILKYDHGMAAPGWCAKYIAENDLADLQSDHAIFKIQTPTVTVRLNAGVNYQGNGELNWDGRVLPDLEFWQMGVGMDGLDVDNPALSGLLGETARPVYDENGQVVMEGFDAFRGTIEDYRVSDALDVHFPLL 405
BLAST of mRNA_H-elongata_contig9967.17292.1 vs. uniprot
Match: D8LMW2_ECTSI (Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW2_ECTSI) HSP 1 Score: 194 bits (492), Expect = 2.540e-58 Identity = 93/157 (59.24%), Postives = 121/157 (77.07%), Query Frame = 1
Query: 1 RIWTRMFEEMQQGRRKLVH-ESFEDWILRFD-HMAAPDWCAKYISERGLDHVQSNHAIFRIVTPTVVVRLLAGINNQQGGNLNWDGRVLPEIDFWQMEVGFEGLVLEHTKLTGLLGETARPVFDDQGHALMRGHDALRGTVEDYRVTDATAIDFALL 465
RIW RM++++ + RR+L ES E+WILR+D +M A WCAKYI+E L +Q+NHAIF+I TPTV VRL AG+N Q G LNWDGRVLP+++FWQM+VG +GL +++ L+GLLGETARPV+ + G A+M G DA RGTVEDYRV+ A + FALL
Sbjct: 150 RIWARMYQDILEDRRQLRGGESLEEWILRYDQNMPARRWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQGDGELNWDGRVLPDLEFWQMDVGIDGLDVDNPALSGLLGETARPVYGENGEAVMEGSDAFRGTVEDYRVSSALGVHFALL 306
BLAST of mRNA_H-elongata_contig9967.17292.1 vs. uniprot
Match: A0A6H5JP37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP37_9PHAE) HSP 1 Score: 192 bits (489), Expect = 4.710e-58 Identity = 91/157 (57.96%), Postives = 120/157 (76.43%), Query Frame = 1
Query: 1 RIWTRMFEEMQQGRRKLVH-ESFEDWILRFD-HMAAPDWCAKYISERGLDHVQSNHAIFRIVTPTVVVRLLAGINNQQGGNLNWDGRVLPEIDFWQMEVGFEGLVLEHTKLTGLLGETARPVFDDQGHALMRGHDALRGTVEDYRVTDATAIDFALL 465
RIW RM++++ +GRR+L ES E+WILR+D +M A WCAKYI+E L +Q+NHAIF+I TPTV VRL AG+N Q G LNWDGRVLP+++FWQ++VG +GL ++ L+GL GETA PV+D+ G A+M G+DA RG VEDYRV+ A + FALL
Sbjct: 135 RIWARMYQDILEGRRQLRGGESLEEWILRYDQNMPARTWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQSNGELNWDGRVLPDLEFWQIDVGIDGLDVDKPALSGLFGETACPVYDENGKAVMEGYDAFRGAVEDYRVSSALGVHFALL 291
BLAST of mRNA_H-elongata_contig9967.17292.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE) HSP 1 Score: 199 bits (507), Expect = 4.080e-57 Identity = 95/155 (61.29%), Postives = 118/155 (76.13%), Query Frame = 1
Query: 1 RIWTRMFEEMQQGRRKLVHESFEDWILRFDHMAAPDWCAKYISERGLDHVQSNHAIFRIVTPTVVVRLLAGINNQQGGNLNWDGRVLPEIDFWQMEVGFEGLVLEHTKLTGLLGETARPVFDDQGHALMRGHDALRGTVEDYRVTDATAIDFALL 465
+IW R +E + RRKL +SFEDW+L F MAA DWC +YISE+GL VQS+HAI++IVTP VVVRL GI +Q G ++WDGRVLP++D WQM+VG GL LE+ LTG+LGETARPV+D+ GHA+M G DA RGT EDYRV+ +DFALL
Sbjct: 540 KIWARHYEAIL-ARRKLRAQSFEDWVLSFTDMAAHDWCTEYISEKGLTGVQSSHAIYQIVTPAVVVRLNVGIGHQDGDEVDWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDEDGHAVMAGDDAYRGTPEDYRVSGPLGMDFALL 693
BLAST of mRNA_H-elongata_contig9967.17292.1 vs. uniprot
Match: A0A6H5JP35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP35_9PHAE) HSP 1 Score: 181 bits (459), Expect = 6.370e-53 Identity = 82/147 (55.78%), Postives = 110/147 (74.83%), Query Frame = 1
Query: 28 MQQGRRKLVHESFEDWILRFDHMAAPDWCAKYISERGLDHVQSNHAIFRIVTPTVVVRLLAGINNQQGGNLNWDGRVLPEIDFWQMEVGFEGLVLEHTKLTGLLGETARPVFDDQGHALMRGHDALRGTVEDYRVTDATAIDFALLR 468
+ +GRR L+ E+FE+W+L F HMAA DWC +YI+ + L VQS AI++I+TP VVVR GI +Q GG++ DGR++P++D W+M+VG GL LE+ LTG+LGETARPV D+ G A+M+G+ A RGT EDYRV+ A DFALLR
Sbjct: 204 IMEGRRHLLSETFEEWVLSFQHMAAHDWCTEYIAHKDLSDVQSAQAIYQIITPEVVVRFNVGIGHQTGGHVEMDGRIVPDLDVWEMDVGLAGLSLENETLTGILGETARPVLDEHGRAVMKGNKAYRGTPEDYRVSGALGTDFALLR 350
BLAST of mRNA_H-elongata_contig9967.17292.1 vs. uniprot
Match: D7G544_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G544_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 2.950e-10 Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = 1
Query: 22 EEMQQGRRKLVH-ESFEDWILRFDHMAAPDWCAKYISE-----RGLDHVQSNHAIFRIVTPTVVVRLLAGINNQQGGNLNWDGRVLPEIDFWQMEVGFE 300
+ ++ G R L E+ DW++ M AP WC KY+ E L ++S+HA+ RI TP + +R+ GIN ++ L DGRV+P FWQM+V E
Sbjct: 389 QRLRGGSRSLRSAETVFDWLVADSVMIAPAWCVKYLKELNGDVTALASMKSSHAVLRIGTPNLSLRVNVGINTEREQTLQ-DGRVVPTASFWQMDVRVE 486 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9967.17292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9967.17292.1 >prot_H-elongata_contig9967.17292.1 ID=prot_H-elongata_contig9967.17292.1|Name=mRNA_H-elongata_contig9967.17292.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp MFEEMQQGRRKLVHESFEDWILRFDHMAAPDWCAKYISERGLDHVQSNHAback to top mRNA from alignment at H-elongata_contig9967:7749..8296+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig9967.17292.1 ID=mRNA_H-elongata_contig9967.17292.1|Name=mRNA_H-elongata_contig9967.17292.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=548bp|location=Sequence derived from alignment at H-elongata_contig9967:7749..8296+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig9967:7749..8296+ >mRNA_H-elongata_contig9967.17292.1 ID=mRNA_H-elongata_contig9967.17292.1|Name=mRNA_H-elongata_contig9967.17292.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=918bp|location=Sequence derived from alignment at H-elongata_contig9967:7749..8296+ (Himanthalia elongata Himel1 dioecious)back to top |