mRNA_H-elongata_contig9967.17292.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9967.17292.1
Unique NamemRNA_H-elongata_contig9967.17292.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig9967.17292.1 vs. uniprot
Match: A0A6H5JS96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS96_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 4.380e-61
Identity = 96/157 (61.15%), Postives = 123/157 (78.34%), Query Frame = 1
Query:    1 RIWTRMFEEMQQGRRKLV-HESFEDWILRFDH-MAAPDWCAKYISERGLDHVQSNHAIFRIVTPTVVVRLLAGINNQQGGNLNWDGRVLPEIDFWQMEVGFEGLVLEHTKLTGLLGETARPVFDDQGHALMRGHDALRGTVEDYRVTDATAIDFALL 465
            RIW RM+++M +GRR+L   ES E+WIL++DH MAAP WCAKYI+E  L  +QS+HAIF+I TPTV VRL AG+N Q  G LNWDGRVLP+++FWQM VG +GL +++  L+GLLGETARPV+D+ G  +M G DA RGT+EDYRV+DA  + F LL
Sbjct:  249 RIWARMYQDMIEGRRELHGDESLEEWILKYDHGMAAPGWCAKYIAENDLADLQSDHAIFKIQTPTVTVRLNAGVNYQGNGELNWDGRVLPDLEFWQMGVGMDGLDVDNPALSGLLGETARPVYDENGQVVMEGFDAFRGTIEDYRVSDALDVHFPLL 405          
BLAST of mRNA_H-elongata_contig9967.17292.1 vs. uniprot
Match: D8LMW2_ECTSI (Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW2_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 2.540e-58
Identity = 93/157 (59.24%), Postives = 121/157 (77.07%), Query Frame = 1
Query:    1 RIWTRMFEEMQQGRRKLVH-ESFEDWILRFD-HMAAPDWCAKYISERGLDHVQSNHAIFRIVTPTVVVRLLAGINNQQGGNLNWDGRVLPEIDFWQMEVGFEGLVLEHTKLTGLLGETARPVFDDQGHALMRGHDALRGTVEDYRVTDATAIDFALL 465
            RIW RM++++ + RR+L   ES E+WILR+D +M A  WCAKYI+E  L  +Q+NHAIF+I TPTV VRL AG+N Q  G LNWDGRVLP+++FWQM+VG +GL +++  L+GLLGETARPV+ + G A+M G DA RGTVEDYRV+ A  + FALL
Sbjct:  150 RIWARMYQDILEDRRQLRGGESLEEWILRYDQNMPARRWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQGDGELNWDGRVLPDLEFWQMDVGIDGLDVDNPALSGLLGETARPVYGENGEAVMEGSDAFRGTVEDYRVSSALGVHFALL 306          
BLAST of mRNA_H-elongata_contig9967.17292.1 vs. uniprot
Match: A0A6H5JP37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP37_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 4.710e-58
Identity = 91/157 (57.96%), Postives = 120/157 (76.43%), Query Frame = 1
Query:    1 RIWTRMFEEMQQGRRKLVH-ESFEDWILRFD-HMAAPDWCAKYISERGLDHVQSNHAIFRIVTPTVVVRLLAGINNQQGGNLNWDGRVLPEIDFWQMEVGFEGLVLEHTKLTGLLGETARPVFDDQGHALMRGHDALRGTVEDYRVTDATAIDFALL 465
            RIW RM++++ +GRR+L   ES E+WILR+D +M A  WCAKYI+E  L  +Q+NHAIF+I TPTV VRL AG+N Q  G LNWDGRVLP+++FWQ++VG +GL ++   L+GL GETA PV+D+ G A+M G+DA RG VEDYRV+ A  + FALL
Sbjct:  135 RIWARMYQDILEGRRQLRGGESLEEWILRYDQNMPARTWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQSNGELNWDGRVLPDLEFWQIDVGIDGLDVDKPALSGLFGETACPVYDENGKAVMEGYDAFRGAVEDYRVSSALGVHFALL 291          
BLAST of mRNA_H-elongata_contig9967.17292.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 4.080e-57
Identity = 95/155 (61.29%), Postives = 118/155 (76.13%), Query Frame = 1
Query:    1 RIWTRMFEEMQQGRRKLVHESFEDWILRFDHMAAPDWCAKYISERGLDHVQSNHAIFRIVTPTVVVRLLAGINNQQGGNLNWDGRVLPEIDFWQMEVGFEGLVLEHTKLTGLLGETARPVFDDQGHALMRGHDALRGTVEDYRVTDATAIDFALL 465
            +IW R +E +   RRKL  +SFEDW+L F  MAA DWC +YISE+GL  VQS+HAI++IVTP VVVRL  GI +Q G  ++WDGRVLP++D WQM+VG  GL LE+  LTG+LGETARPV+D+ GHA+M G DA RGT EDYRV+    +DFALL
Sbjct:  540 KIWARHYEAIL-ARRKLRAQSFEDWVLSFTDMAAHDWCTEYISEKGLTGVQSSHAIYQIVTPAVVVRLNVGIGHQDGDEVDWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDEDGHAVMAGDDAYRGTPEDYRVSGPLGMDFALL 693          
BLAST of mRNA_H-elongata_contig9967.17292.1 vs. uniprot
Match: A0A6H5JP35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP35_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 6.370e-53
Identity = 82/147 (55.78%), Postives = 110/147 (74.83%), Query Frame = 1
Query:   28 MQQGRRKLVHESFEDWILRFDHMAAPDWCAKYISERGLDHVQSNHAIFRIVTPTVVVRLLAGINNQQGGNLNWDGRVLPEIDFWQMEVGFEGLVLEHTKLTGLLGETARPVFDDQGHALMRGHDALRGTVEDYRVTDATAIDFALLR 468
            + +GRR L+ E+FE+W+L F HMAA DWC +YI+ + L  VQS  AI++I+TP VVVR   GI +Q GG++  DGR++P++D W+M+VG  GL LE+  LTG+LGETARPV D+ G A+M+G+ A RGT EDYRV+ A   DFALLR
Sbjct:  204 IMEGRRHLLSETFEEWVLSFQHMAAHDWCTEYIAHKDLSDVQSAQAIYQIITPEVVVRFNVGIGHQTGGHVEMDGRIVPDLDVWEMDVGLAGLSLENETLTGILGETARPVLDEHGRAVMKGNKAYRGTPEDYRVSGALGTDFALLR 350          
BLAST of mRNA_H-elongata_contig9967.17292.1 vs. uniprot
Match: D7G544_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G544_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.950e-10
Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = 1
Query:   22 EEMQQGRRKLVH-ESFEDWILRFDHMAAPDWCAKYISE-----RGLDHVQSNHAIFRIVTPTVVVRLLAGINNQQGGNLNWDGRVLPEIDFWQMEVGFE 300
            + ++ G R L   E+  DW++    M AP WC KY+ E       L  ++S+HA+ RI TP + +R+  GIN ++   L  DGRV+P   FWQM+V  E
Sbjct:  389 QRLRGGSRSLRSAETVFDWLVADSVMIAPAWCVKYLKELNGDVTALASMKSSHAVLRIGTPNLSLRVNVGINTEREQTLQ-DGRVVPTASFWQMDVRVE 486          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9967.17292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JS96_9PHAE4.380e-6161.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMW2_ECTSI2.540e-5859.24Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JP37_9PHAE4.710e-5857.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNZ2_9PHAE4.080e-5761.29VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JP35_9PHAE6.370e-5355.78Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G544_ECTSI2.950e-1038.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9967contigH-elongata_contig9967:7749..8296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size548
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9967.17292.1prot_H-elongata_contig9967.17292.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9967 7764..8222 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931385.2048955-UTR-H-elongata_contig9967:7748..77631622931385.2048955-UTR-H-elongata_contig9967:7748..7763Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9967 7749..7763 +
1691679814.7105482-UTR-H-elongata_contig9967:7748..77631691679814.7105482-UTR-H-elongata_contig9967:7748..7763Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9967 7749..7763 +
1622931385.246807-UTR-H-elongata_contig9967:8222..82961622931385.246807-UTR-H-elongata_contig9967:8222..8296Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9967 8223..8296 +
1691679814.7362914-UTR-H-elongata_contig9967:8222..82961691679814.7362914-UTR-H-elongata_contig9967:8222..8296Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9967 8223..8296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931385.2278976-CDS-H-elongata_contig9967:7763..82221622931385.2278976-CDS-H-elongata_contig9967:7763..8222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9967 7764..8222 +
1691679814.7251697-CDS-H-elongata_contig9967:7763..82221691679814.7251697-CDS-H-elongata_contig9967:7763..8222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9967 7764..8222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9967.17292.1

>prot_H-elongata_contig9967.17292.1 ID=prot_H-elongata_contig9967.17292.1|Name=mRNA_H-elongata_contig9967.17292.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp
MFEEMQQGRRKLVHESFEDWILRFDHMAAPDWCAKYISERGLDHVQSNHA
IFRIVTPTVVVRLLAGINNQQGGNLNWDGRVLPEIDFWQMEVGFEGLVLE
HTKLTGLLGETARPVFDDQGHALMRGHDALRGTVEDYRVTDATAIDFALL
RF*
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mRNA from alignment at H-elongata_contig9967:7749..8296+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9967.17292.1 ID=mRNA_H-elongata_contig9967.17292.1|Name=mRNA_H-elongata_contig9967.17292.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=548bp|location=Sequence derived from alignment at H-elongata_contig9967:7749..8296+ (Himanthalia elongata Himel1 dioecious)
AGAATATGGACTAGGATGTTCGAGGAAATGCAACAGGGTAGGCGTAAATT GGTCCACGAAAGCTTCGAAGATTGGATCCTGCGGTTTGACCACATGGCGG CGCCTGATTGGTGCGCAAAGTACATCTCAGAGCGCGGCCTGGACCATGTG CAGTCGAATCACGCCATTTTCCGGATCGTGACACCTACTGTCGTTGTTCG CCTTCTTGCTGGCATCAACAACCAACAGGGGGGTAACTTAAACTGGGACG GCCGCGTGTTACCCGAAATCGATTTCTGGCAGATGGAAGTCGGATTTGAA GGCCTTGTCCTTGAGCATACCAAGCTTACCGGTCTCCTTGGTGAGACTGC CCGTCCGGTCTTCGACGACCAGGGTCACGCGTTAATGAGAGGGCACGATG CTCTTCGCGGGACTGTCGAGGACTACCGCGTGACAGATGCCACCGCTATT GACTTTGCACTCCTTCGTTTCTAGAGCTCGAAGGCACAACAGGAGAACGA TGCGATGTCGCACTCGAGACTAATTCATTTTTTTTTTTTATGGCTGAA
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Coding sequence (CDS) from alignment at H-elongata_contig9967:7749..8296+

>mRNA_H-elongata_contig9967.17292.1 ID=mRNA_H-elongata_contig9967.17292.1|Name=mRNA_H-elongata_contig9967.17292.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=918bp|location=Sequence derived from alignment at H-elongata_contig9967:7749..8296+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGAGGAAATGCAACAGGGTAGGCGTAAATTGGTCCACGAAAGCTT
CGAAGATTGGATCCTGCGGTTTGACCACATGGCGGCGCCTGATTGGTGCG
CAAAGTACATCTCAGAGCGCGGCCTGGACCATGTGCAGTCGAATCACGCC
ATTTTCCGGATCGTGACACCTACTGTCGTTGTTCGCCTTCTTGCTGGCAT
CAACAACCAACAGGGGGGTAACTTAAACTGGGACGGCCGCGTGTTACCCG
AAATCGATTTCTGGCAGATGGAAGTCGGATTTGAAGGCCTTGTCCTTGAG
CATACCAAGCTTACCGGTCTCCTTGGTGAGACTGCCCGTCCGGTCTTCGA
CGACCAGGGTCACGCGTTAATGAGAGGGCACGATGCTCTTCGCGGGACTG
TCGAGGACTACCGCGTGACAGATGCCACCGCTATTGACTTTGCACTCCTT
CGTTTCTAGATGTTCGAGGAAATGCAACAGGGTAGGCGTAAATTGGTCCA
CGAAAGCTTCGAAGATTGGATCCTGCGGTTTGACCACATGGCGGCGCCTG
ATTGGTGCGCAAAGTACATCTCAGAGCGCGGCCTGGACCATGTGCAGTCG
AATCACGCCATTTTCCGGATCGTGACACCTACTGTCGTTGTTCGCCTTCT
TGCTGGCATCAACAACCAACAGGGGGGTAACTTAAACTGGGACGGCCGCG
TGTTACCCGAAATCGATTTCTGGCAGATGGAAGTCGGATTTGAAGGCCTT
GTCCTTGAGCATACCAAGCTTACCGGTCTCCTTGGTGAGACTGCCCGTCC
GGTCTTCGACGACCAGGGTCACGCGTTAATGAGAGGGCACGATGCTCTTC
GCGGGACTGTCGAGGACTACCGCGTGACAGATGCCACCGCTATTGACTTT
GCACTCCTTCGTTTCTAG
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