mRNA_H-elongata_contig99535.17284.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig99535.17284.1 vs. uniprot
Match: A0A6H5JRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA3_9PHAE) HSP 1 Score: 113 bits (283), Expect = 2.110e-26 Identity = 70/193 (36.27%), Postives = 105/193 (54.40%), Query Frame = 1
Query: 1 ENITIVAMISATGRVIPPLYIFKSQKFQKKW-VETSGSDGSLYEVTYIFYMQGSVLPDCMEVLRKIYHRQQTGQC----KSHVVILDEHASHVTRDVLRSSLGNSIDPFQLPPHFAHVTQLLDVCAFGIFKRYMTITSTAFLSHNGMKIPVKNDTTSMVRKVM----------ASFSVTDIVPFDKDRAMNRL 534
EN T+VA ISA G P IFK Q+ Q W VE +G +G+ Y T +MQG D K +H+Q + K H+++LD HASHV+ +V++ ++ I FQLP H +H+TQ LDV AFG FK+ +T +F ++G +P+K D ++ +SF+ + P +K+RA+ RL
Sbjct: 214 ENTTVVATISADGHTWAPTIIFKGQRLQADWFVERNGLEGAKYTCTDYSFMQG----DLFIAYLKDFHKQLCDRGLLDGKPHILLLDGHASHVSVEVIKLAMNLKIILFQLPSHTSHITQPLDVVAFGSFKKSVTRVLASFYRNSGGLLPLKRDMPGVIADAWKLSFTPEINKSSFAGAGLWPVNKERALGRL 402
BLAST of mRNA_H-elongata_contig99535.17284.1 vs. uniprot
Match: A0A6H5J9B8_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B8_9PHAE) HSP 1 Score: 108 bits (269), Expect = 7.270e-25 Identity = 66/189 (34.92%), Postives = 96/189 (50.79%), Query Frame = 1
Query: 1 ENITIVAMISATGRVIPPLYIFKSQKFQKKW-VETSGSDGSLYEVTYIFYMQGSVLPDCMEVLRKIYHRQQTGQCKSHVVILDEHASHVTRDVLRSSLGNSIDPFQLPPHFAHVTQLLDVCAFGIFKRYMTITSTAFLSHNGMKIPVKNDTTSMV----------RKVMASFSVTDIVPFDKDRAMNRL 534
EN T+V ISA G P IF+ Q+ Q W E +G + Y T +MQG V + K + K H ++LDEHAS+V+ +V++ ++ +I FQLP H +H+TQ LDV AFG FK+ +T + NG +P+K D ++ + ASF + P D DRA+ RL
Sbjct: 21 ENTTVVTTISANGATWAPTIIFRGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIKYFKDFHKQLDDRGVLDGKPHTLVLDEHASYVSYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFGTFKKEVTTVLQDYYHANGGLLPLKRDVPGVIAAAWQRSFTPERNKASFGGVGLWPVDMDRALTRL 209
BLAST of mRNA_H-elongata_contig99535.17284.1 vs. uniprot
Match: A0A6H5JBS6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS6_9PHAE) HSP 1 Score: 108 bits (270), Expect = 1.550e-24 Identity = 67/189 (35.45%), Postives = 95/189 (50.26%), Query Frame = 1
Query: 1 ENITIVAMISATGRVIPPLYIFKSQKFQKKW-VETSGSDGSLYEVTYIFYMQGSVLPDCMEVLRKIYHRQQTGQCKSHVVILDEHASHVTRDVLRSSLGNSIDPFQLPPHFAHVTQLLDVCAFGIFKRYMTITSTAFLSHNGMKIPVKNDTTSMVRKVM----------ASFSVTDIVPFDKDRAMNRL 534
EN T+V ISA G P IFK Q+ Q W E +G + Y T +MQG V ++ K + K H ++LD HASHV+ +V++ ++ +I FQLP H +H+TQ LDV AFG FK+ +T + NG +P+K D ++ ASF + P D DRA+ RL
Sbjct: 195 ENTTVVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIKYLKDFHKQLDDRGVLDGKPHTLVLDGHASHVSYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFGTFKKEVTKVLQDYYHANGGLLPLKRDVPGVIAAAWQRSLTLERNNASFGGAGLRPVDMDRALTRL 383
BLAST of mRNA_H-elongata_contig99535.17284.1 vs. uniprot
Match: A0A6H5KGL1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL1_9PHAE) HSP 1 Score: 106 bits (264), Expect = 5.350e-24 Identity = 65/189 (34.39%), Postives = 96/189 (50.79%), Query Frame = 1
Query: 1 ENITIVAMISATGRVIPPLYIFKSQKFQKKW-VETSGSDGSLYEVTYIFYMQGSVLPDCMEVLRKIYHRQQTGQCKSHVVILDEHASHVTRDVLRSSLGNSIDPFQLPPHFAHVTQLLDVCAFGIFKRYMTITSTAFLSHNGMKIPVKNDTTSMV----------RKVMASFSVTDIVPFDKDRAMNRL 534
EN T+V ISA G P IFK Q+ Q W E +G + Y T +MQG V ++ K + K H+++LD HASHV+ + ++ ++ +I F+LP H +H+TQ LDV AFG FK+ +T + NG +P+K D ++ + ASF + P D DRA+ RL
Sbjct: 21 ENTTVVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIMYLKDFHKQLDDRGVLDGKPHILVLDGHASHVSYEFIKLAMDLNIILFKLPSHTSHITQPLDVVAFGTFKKEVTKVLQDYYHANGGLLPLKRDVPGVIAAAWQNSLTPERNKASFGGAGLWPVDMDRALTRL 209
BLAST of mRNA_H-elongata_contig99535.17284.1 vs. uniprot
Match: A0A6H5KN20_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN20_9PHAE) HSP 1 Score: 104 bits (260), Expect = 4.980e-23 Identity = 60/155 (38.71%), Postives = 87/155 (56.13%), Query Frame = 1
Query: 1 ENITIVAMISATGRVIPPLYIFKSQKFQKKW-VETSGSDGSLYEVTYIFYMQGSVLPDCMEVLRKIYHRQQTGQCKSHVVILDEHASHVTRDVLRSSLGNSIDPFQLPPHFAHVTQLLDVCAFGIFKRYMTITSTAFLSHNGMKIPVKNDTTSMV 462
EN T+VA IS G P IFK Q+ Q W VE +G +G+ Y T +MQG V ++ K + K H+++LD HASHV+ V R ++ I FQLP H +H+TQ L+V AFG FK+ +T +F ++G +P+K D S++
Sbjct: 255 ENTTVVATISVDGHTWAPTIIFKGQRLQADWFVERNGPEGARYTCTDSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLLDGHASHVSVQVFRLAMNLRIILFQLPSHTSHITQPLNVVAFGRFKKSVTRVLASFYHNSGGLLPLKRDMPSVI 409
BLAST of mRNA_H-elongata_contig99535.17284.1 vs. uniprot
Match: A0A6H5JYS0_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYS0_9PHAE) HSP 1 Score: 104 bits (259), Expect = 8.550e-23 Identity = 63/186 (33.87%), Postives = 97/186 (52.15%), Query Frame = 1
Query: 10 TIVAMISATGRVIPPLYIFKSQKFQKKW-VETSGSDGSLYEVTYIFYMQGSVLPDCMEVLRKIYHRQQTGQCKSHVVILDEHASHVTRDVLRSSLGNSIDPFQLPPHFAHVTQLLDVCAFGIFKRYMTITSTAFLSHNGMKIPVKNDTTSMVRKVM----------ASFSVTDIVPFDKDRAMNRL 534
T+V ISA G P IFK + Q W VE +G +G+ Y T +MQG V ++ K + + K H+++LD H+SHV +V R ++ I QLP H +H+TQ LDV AFG FK+ +T +F ++G +P+K D ++ +SF+ + P +K+RA+ RL
Sbjct: 179 TVVVTISADGHTWAPTIIFKGHRLQADWFVERNGPEGARYTCTDSSFMQGDVFIAYLKDFHKQFGERGLLDGKPHILLLDGHSSHVRVEVTRLAMNLKIILIQLPSHTSHITQPLDVVAFGRFKKSVTRVLASFYHNSGGLLPLKRDMPGVIADAWKLSFTPEINKSSFAGAGLWPVNKERALGRL 364
BLAST of mRNA_H-elongata_contig99535.17284.1 vs. uniprot
Match: A0A6H5L2E0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E0_9PHAE) HSP 1 Score: 103 bits (257), Expect = 1.340e-22 Identity = 62/185 (33.51%), Postives = 98/185 (52.97%), Query Frame = 1
Query: 13 IVAMISATGRVIPPLYIFKSQKFQKKW-VETSGSDGSLYEVTYIFYMQGSVLPDCMEVLRKIYHRQQTGQCKSHVVILDEHASHVTRDVLRSSLGNSIDPFQLPPHFAHVTQLLDVCAFGIFKRYMTITSTAFLSHNGMKIPVKNDTTSMVRKVM----------ASFSVTDIVPFDKDRAMNRL 534
+VA ISA + P IFK Q+ Q W E +G +G+ Y T +MQG V ++ K + K H+++LD HASHV+ +V + ++ I FQLP H +H+TQ LDV AFG FK+ +T +F ++G +P+K D ++ +SF+ + P +K+RA+ +L
Sbjct: 161 VVANISADDHTLAPTIIFKGQRLQTDWFAERNGPEGARYTCTGSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLLDGHASHVSVEVSKLAMNLKIISFQLPSHTSHITQPLDVVAFGRFKKSVTRVLASFYHNSGGSLPLKRDMPGVIADAWKLSFAPEINKSSFAGAGLWPVNKERALGQL 345
BLAST of mRNA_H-elongata_contig99535.17284.1 vs. uniprot
Match: A0A6H5JV04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV04_9PHAE) HSP 1 Score: 103 bits (256), Expect = 2.800e-22 Identity = 64/189 (33.86%), Postives = 101/189 (53.44%), Query Frame = 1
Query: 1 ENITIVAMISATGRVIPPLYIFKSQKFQKKW-VETSGSDGSLYEVTYIFYMQGSVLPDCMEVLRKIYHRQQTGQCKSHVVILDEHASHVTRDVLRSSLGNSIDPFQLPPHFAHVTQLLDVCAFGIFKRYMTITSTAFLSHNGMKIPVKNDTTSMV----------RKVMASFSVTDIVPFDKDRAMNRL 534
EN T+V ISA G P IFK Q+ Q W E +G + Y T +MQG+V ++ + ++ K H+++LD HASHV+ +V++ ++ +I FQLP H +H+TQ LDV AFG FKR +T + + +G +P K D ++ + +SF+ + P + +RAM+RL
Sbjct: 199 ENTTLVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLLDGHASHVSVEVIQLAMELNIVLFQLPSHTSHITQPLDVVAFGAFKREVTKVLSDYYRVSGGLLPQKRDVPGVIAAAWGATFTSERNRSSFAGAGLWPVNMERAMSRL 387
BLAST of mRNA_H-elongata_contig99535.17284.1 vs. uniprot
Match: A0A6H5JJ12_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ12_9PHAE) HSP 1 Score: 103 bits (256), Expect = 3.000e-22 Identity = 64/189 (33.86%), Postives = 101/189 (53.44%), Query Frame = 1
Query: 1 ENITIVAMISATGRVIPPLYIFKSQKFQKKW-VETSGSDGSLYEVTYIFYMQGSVLPDCMEVLRKIYHRQQTGQCKSHVVILDEHASHVTRDVLRSSLGNSIDPFQLPPHFAHVTQLLDVCAFGIFKRYMTITSTAFLSHNGMKIPVKNDTTSMV----------RKVMASFSVTDIVPFDKDRAMNRL 534
EN T+V ISA G P IFK Q+ Q W E +G + Y T +MQG+V ++ + ++ K H+++LD HASHV+ +V++ ++ +I FQLP H +H+TQ LDV AFG FKR +T + + +G +P K D ++ + +SF+ + P + +RAM+RL
Sbjct: 440 ENTTLVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLLDGHASHVSVEVIQLAMELNIVLFQLPSHTSHITQPLDVVAFGAFKREVTKVLSDYYRVSGGLLPQKRDVPGVIAAAWGATFTSERNRSSFAGAGLWPVNMERAMSRL 628
BLAST of mRNA_H-elongata_contig99535.17284.1 vs. uniprot
Match: A0A6H5KS64_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS64_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 7.220e-22 Identity = 63/188 (33.51%), Postives = 93/188 (49.47%), Query Frame = 1
Query: 1 ENITIVAMISATGRVIPPLYIFKSQKFQKKWVETSGSDGSLYEVTYIFYMQGSVLPDCMEVLRKIYHRQQTGQCKSHVVILDEHASHVTRDVLRSSLGNSIDPFQLPPHFAHVTQLLDVCAFGIFKRYMTITSTAFLSHNGMKIPVKNDTTSMVRKV----------MASFSVTDIVPFDKDRAMNRL 534
EN TI+ I+A G V P+ IFK Q+F WV P + L + R Q + K+HV++LD HASHV+ DV++ ++ +I QLP H +H+TQ L+V FG FK+ + AF + NG +P K D M+ ASF+ + P D++RA++RL
Sbjct: 7 ENCTIITTINAAGAVSAPIIIFKGQRFNGDWVADLNG------------------PPVRQELPQAARRPQLARRKTHVLVLDGHASHVSLDVIKLAISLNIHLVQLPSH-SHITQPLNVARFGCFKKELAKVIQAFPARNGGALPRKRDMAGMIGLAWGPSFTPEINQASFAGAGLWPVDRERALSRL 175 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99535.17284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig99535.17284.1 >prot_H-elongata_contig99535.17284.1 ID=prot_H-elongata_contig99535.17284.1|Name=mRNA_H-elongata_contig99535.17284.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp MISATGRVIPPLYIFKSQKFQKKWVETSGSDGSLYEVTYIFYMQGSVLPDback to top mRNA from alignment at H-elongata_contig99535:1677..2219+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig99535.17284.1 ID=mRNA_H-elongata_contig99535.17284.1|Name=mRNA_H-elongata_contig99535.17284.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=543bp|location=Sequence derived from alignment at H-elongata_contig99535:1677..2219+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig99535:1677..2219+ >mRNA_H-elongata_contig99535.17284.1 ID=mRNA_H-elongata_contig99535.17284.1|Name=mRNA_H-elongata_contig99535.17284.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig99535:1677..2219+ (Himanthalia elongata Himel1 dioecious)back to top |