mRNA_H-elongata_contig99363.17273.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig99363.17273.1
Unique NamemRNA_H-elongata_contig99363.17273.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig99363.17273.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 4.530e-53
Identity = 88/145 (60.69%), Postives = 110/145 (75.86%), Query Frame = 1 
Query:    1 QVKNGGALSISKECAVTFMGTVKFINNSVLIKQLPPVTCGEGCTTIGRGLSYVAKKGGAVHNKGDLTFQGDASFLGCYSQTDDSVETSRGGAISNNAPGVIHFMGDLTMESNEAEGFFEGQGGAIYNRGDIVVDGDVVFYDNDAS 435
            QVKNGG LS+++    TFMGT +F +NSV +KQ+ PV+CG+GCT IGRGLSY+ KKGGA+HNKG LTF+GDA+F      T+DSVE  + GAISN   G I F   LTM+ NEA+GFFEG GGAIYNRG+IVV+G+ +F  N +S
Sbjct:   98 QVKNGGVLSVAEGATATFMGTSEFSDNSVAVKQIGPVSCGDGCTRIGRGLSYIVKKGGAIHNKGTLTFEGDATFERNEVHTEDSVEQGKAGAISNTGSGTILFKSKLTMKDNEADGFFEGIGGAIYNRGEIVVEGESLFSLNTSS 242
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BLAST of mRNA_H-elongata_contig99363.17273.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 5.050e-52
Identity = 89/145 (61.38%), Postives = 107/145 (73.79%), Query Frame = 1 
Query:    1 QVKNGGALSISKECAVTFMGTVKFINNSVLIKQLPPVTCGEGCTTIGRGLSYVAKKGGAVHNKGDLTFQGDASFLGCYSQTDDSVETSRGGAISNNAPGVIHFMGDLTMESNEAEGFFEGQGGAIYNRGDIVVDGDVVFYDNDAS 435
            QVKNGG LS+++    TFMGT +F +NSV +KQL  V+CG+GC   GRGLSYV KKGGA+HNKG LTF+GDA+F      T+DSVE  + GAISN   G I F   LTM+ NEAEGFFEG GGAIYNRG+I+VDG+ +F  N AS
Sbjct:   98 QVKNGGVLSVAEGATSTFMGTSEFSDNSVAVKQLGAVSCGDGCERTGRGLSYVVKKGGAIHNKGTLTFEGDATFERNAVHTEDSVEQGKAGAISNTGSGTIWFKSKLTMKDNEAEGFFEGLGGAIYNRGEIIVDGESLFSLNTAS 242
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BLAST of mRNA_H-elongata_contig99363.17273.1 vs. uniprot
Match: D7FL58_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL58_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 5.660e-37
Identity = 67/127 (52.76%), Postives = 87/127 (68.50%), Query Frame = 1 
Query:   55 MGTVKFINNSVLIKQLPPVTCGEGCTTIGRGLSYVAKKGGAVHNKGDLTFQGDASFLGCYSQTDDSVETSRGGAISNNAPGVIHFMGDLTMESNEAEGFFEGQGGAIYNRGDIVVDGDVVFYDNDAS 435
            MGT +F NNSV +KQ   ++CG+GCT   RGL+Y+ KKGGA+HNKG LTF GDA+F    + T+ S +   GGAISN   G I F   LTM+ N+A+  F G GGAIYNRG+I+V+G  +F  N A+
Sbjct:    1 MGTSEFSNNSVAVKQFGRISCGDGCTRSERGLTYIVKKGGAIHNKGTLTFDGDATFERNVAHTESSNQRGNGGAISNTGSGTILFKSKLTMKDNQADANFAGLGGAIYNRGEIIVEGASLFSLNHAA 127
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BLAST of mRNA_H-elongata_contig99363.17273.1 vs. uniprot
Match: A0A6H5KTD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD4_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.200e-22
Identity = 62/143 (43.36%), Postives = 82/143 (57.34%), Query Frame = 1 
Query:    7 KNGGALSISKECAVTFMGTVKFINNSVLIKQLPPVTCGEGCTTIGRGLSYVAKKGGAVHNKGDLTFQGDASFLGCYSQTDDSVE--TSRGGAISNNAPGVIHFMGDLTMESNEAEGFFEG-QGGAIYNRGDIVVDGDVVFYDN 426
            KNGG L +       F GT +F +NS++   +   T  E           + +KGGA+H KG LTF+ DA+F G     +D +   +  GGAIS +  G I+FMG LTM  NEA+ +F G QGGAI+NRGDIVVDG+  F  N
Sbjct:  102 KNGGVLKLELGAVGVFKGTAEFSDNSIISTSIDESTEEE-----------ILRKGGAIHTKGSLTFEKDATFSG---NLNDRLYYGSGPGGAISVHVKGSIYFMGKLTMTDNEADDYFGGAQGGAIFNRGDIVVDGEAEFTGN 230
[Close]
BLAST of mRNA_H-elongata_contig99363.17273.1 vs. uniprot
Match: D8LG63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG63_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.850e-6
Identity = 34/89 (38.20%), Postives = 41/89 (46.07%), Query Frame = 1 
Query:  169 GGAVHNKGDLTFQGDASFLGCYSQTDDSVETSRGGAISNNAPGVIHFMGDLTMESNEAEGFFEGQGGAIYNRGDIVVDGDVVFYDNDAS 435
            GG V   G  T  GDA+F GC S          GGAI  +  G + F   +T+        F GQGG IYN G++ V G   F D  AS
Sbjct:   23 GGCVRTAGTFTVNGDATFTGCESVGAGESAPGPGGAIFVSETGSVSFSEGVTIMETSITDDFGGQGGGIYNLGEVNVAGGSRFEDISAS 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99363.17273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FLJ6_ECTSI4.530e-5360.69Asn/thr-rich large protein family protein n=1 Tax=... [more]
D8LJ44_ECTSI5.050e-5261.38Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FL58_ECTSI5.660e-3752.76Asn/thr-rich large protein family protein n=1 Tax=... [more]
A0A6H5KTD4_9PHAE1.200e-2243.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG63_ECTSI1.850e-638.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig99363contigH-elongata_contig99363:167..1602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size435
Cds size435
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig99363.17273.1prot_H-elongata_contig99363.17273.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig99363 167..1602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931382.750128-CDS-H-elongata_contig99363:166..2561622931382.750128-CDS-H-elongata_contig99363:166..256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99363 167..256 -
1691679813.5760512-CDS-H-elongata_contig99363:166..2561691679813.5760512-CDS-H-elongata_contig99363:166..256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99363 167..256 -
1622931382.7694812-CDS-H-elongata_contig99363:704..8601622931382.7694812-CDS-H-elongata_contig99363:704..860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99363 705..860 -
1691679813.5883827-CDS-H-elongata_contig99363:704..8601691679813.5883827-CDS-H-elongata_contig99363:704..860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99363 705..860 -
1622931382.7866483-CDS-H-elongata_contig99363:1413..16021622931382.7866483-CDS-H-elongata_contig99363:1413..1602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99363 1414..1602 -
1691679813.601037-CDS-H-elongata_contig99363:1413..16021691679813.601037-CDS-H-elongata_contig99363:1413..1602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99363 1414..1602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig99363.17273.1

>prot_H-elongata_contig99363.17273.1 ID=prot_H-elongata_contig99363.17273.1|Name=mRNA_H-elongata_contig99363.17273.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
QVKNGGALSISKECAVTFMGTVKFINNSVLIKQLPPVTCGEGCTTIGRGL
SYVAKKGGAVHNKGDLTFQGDASFLGCYSQTDDSVETSRGGAISNNAPGV
IHFMGDLTMESNEAEGFFEGQGGAIYNRGDIVVDGDVVFYDNDAS
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mRNA from alignment at H-elongata_contig99363:167..1602-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig99363.17273.1 ID=mRNA_H-elongata_contig99363.17273.1|Name=mRNA_H-elongata_contig99363.17273.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1436bp|location=Sequence derived from alignment at H-elongata_contig99363:167..1602- (Himanthalia elongata Himel1 dioecious)
CAGGTCAAGAACGGCGGTGCTCTATCAATCTCAAAGGAATGTGCCGTGAC
CTTCATGGGCACGGTCAAGTTCATCAACAACTCTGTCCTTATTAAGCAGC
TGCCCCCCGTCACGTGTGGAGAAGGGTGTACCACGATCGGGCGCGGCCTA
TCGTATGTGGCCAAAAAGGGTGGTGCTGTCCACAACAAGGTCTGAAACGA
ATACAATGGTTTTCTCTATAATGGCAACTTTATTTCTGTATGAGACTACC
ATCGTCAGGGTAGGCGGATCATTAATCAAAAGTCCATGCATGCTACTCAT
CACATGCTTTGATGGCGCTTGGCTATCTTTGGTTTCGGTTATACTGTGTT
CGGCACGTCTAATGACATGTCCAGCATTGAGTCTCTCGAAAAGGTTATGG
GTGCATAGATGCCAAGCTAGAGCGCTTGTTGGTGGAGCCCTATTCCTCAA
TATTACGTTCGACCCTAGGTCAAGGTGATGACCCTGGCTTTTCGTGATGG
AAATGGGGCGTTGTCATTTTCCTCCCCTACTTGGCTGTTGAATCACTTTG
ATGTTTAAATCTATGAGTACCTTGTTAATAATTCGACCCGTGCGTGATAT
CCCTCCTTGCACTAATCTTAGGCGCCCCATGCTGCTTTCATCGTGTTCGG
AAACTTCGTGAGTCATTTGAAAGATGAAGCTCACTTCCAAGGATCTTGTG
ACCGCCGCCTGACATCAAACTTTCGTCGTCCGTTCTCCGCAGGGTGACTT
GACTTTCCAAGGGGATGCTTCCTTCTTGGGATGCTACTCGCAGACCGATG
ACTCTGTGGAGACATCAAGGGGGGGCGCCATCTCTAACAATGCTCCGGGT
GTCATTCACTTCATGGGTGATCTCACGATGGAGAGCAACGAGGCCGAAGT
GAGTGCAAATTACGAGTGTTTTTAATATCGACGATACCTTTGACGAGTAA
GATTAATTTCCATTGTGAGCTGGCGTTCAGATGCTATCAATTCACCAGGT
TCAGCAAGACTTGCAATGGCGTACAGCATGGTGGTACTTATCAACCTTTA
GGATGGATGCATAATCTGATTATAGGCCAGAATGTTAAAGTACTTGCTTA
ATATGCGCCCTCTTTCCATTACATGTACTGCAGAGGGCGCGGTATAGGTC
ACTTGCATTCATCGATTTCTCGGAGATCGACAGGTCTGAACCTAACCTTG
CCTTCGAAGAAGAAAACTAAAGGCTAGGTCGTTTGAAGCATTTCCATTGT
TATACACAGTCTATTATGTCTTGGACCGTTTACTATTTGATCATTTCAAT
ATTTGACTTCGTGCCCCCTAACCAAGAAAATGCCGCACAATAACAGGGAT
TTTTCGAAGGACAAGGCGGGGCCATCTACAACCGCGGTGACATTGTAGTC
GATGGCGATGTCGTATTTTACGATAACGATGCCTCG
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Coding sequence (CDS) from alignment at H-elongata_contig99363:167..1602-

>mRNA_H-elongata_contig99363.17273.1 ID=mRNA_H-elongata_contig99363.17273.1|Name=mRNA_H-elongata_contig99363.17273.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig99363:167..1602- (Himanthalia elongata Himel1 dioecious)
CAGGTCAAGAACGGCGGTGCTCTATCAATCTCAAAGGAATGTGCCGTGAC
CTTCATGGGCACGGTCAAGTTCATCAACAACTCTGTCCTTATTAAGCAGC
TGCCCCCCGTCACGTGTGGAGAAGGGTGTACCACGATCGGGCGCGGCCTA
TCGTATGTGGCCAAAAAGGGTGGTGCTGTCCACAACAAGCAGGTCAAGAA
CGGCGGTGCTCTATCAATCTCAAAGGAATGTGCCGTGACCTTCATGGGCA
CGGTCAAGTTCATCAACAACTCTGTCCTTATTAAGCAGCTGCCCCCCGTC
ACGTGTGGAGAAGGGTGTACCACGATCGGGCGCGGCCTATCGTATGTGGC
CAAAAAGGGTGGTGCTGTCCACAACAAGGGTGACTTGACTTTCCAAGGGG
ATGCTTCCTTCTTGGGATGCTACTCGCAGACCGATGACTCTGTGGAGACA
TCAAGGGGGGGCGCCATCTCTAACAATGCTCCGGGTGTCATTCACTTCAT
GGGTGATCTCACGATGGAGAGCAACGAGGCCGAAGGTGACTTGACTTTCC
AAGGGGATGCTTCCTTCTTGGGATGCTACTCGCAGACCGATGACTCTGTG
GAGACATCAAGGGGGGGCGCCATCTCTAACAATGCTCCGGGTGTCATTCA
CTTCATGGGTGATCTCACGATGGAGAGCAACGAGGCCGAAGGATTTTTCG
AAGGACAAGGCGGGGCCATCTACAACCGCGGTGACATTGTAGTCGATGGC
GATGTCGTATTTTACGATAACGATGCCTCGGGATTTTTCGAAGGACAAGG
CGGGGCCATCTACAACCGCGGTGACATTGTAGTCGATGGCGATGTCGTAT
TTTACGATAACGATGCCTCG
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