mRNA_H-elongata_contig99216.17261.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig99216.17261.1
Unique NamemRNA_H-elongata_contig99216.17261.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig99216.17261.1 vs. uniprot
Match: D7FQC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC5_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.000e-15
Identity = 71/190 (37.37%), Postives = 96/190 (50.53%), Query Frame = 1 
Query: 1417 GLICLERTIPAEISRSIKMFAEEAVSPFKVEVFRGGSLSADSR--------WLDTLTEPFLARSSSSSFFCASGRQQA--HARTET-----------NEPSLDIYPDLADTFDD-------AVRWLRSDIDSVTRVFTREVA-RSPAPWP----GFA---MVAKEGGEIDLTVKLELLWKGKCPRYHLDR 1878
            GL+CLER IP +I R ++  A+ A +PFKVEV R GS   DS         WLD L       SSSS+   A GR  A    R+E             + +  ++P L +           A RWL++DI  V R+F RE++  S  P      G A   +  K+   +D+TVKLELL +GKCPR+HLD+
Sbjct:   32 GLLCLERQIPDQILRGLEELADNA-TPFKVEVLRPGSRRGDSDDADNEGDGWLDNLVASIGNSSSSSN---AGGRDNAGEEPRSENLARRRIQGEILQDDASPLHPKLPNLQQQLDVKAQAAARWLKADIKRVARIFAREISVLSDEPGETSLLGIATEPLARKDKRTVDVTVKLELLTRGKCPRFHLDK 217
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BLAST of mRNA_H-elongata_contig99216.17261.1 vs. uniprot
Match: A0A6H5JL98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL98_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.460e-15
Identity = 74/190 (38.95%), Postives = 93/190 (48.95%), Query Frame = 1 
Query: 1417 GLICLERTIPAEISRSIKMFAEEAVSPFKVEVFRGGSLSADSR--------WLDTLTEPFLARSSSSSFFCASGRQQAH--------ARTETNEPSLDIY--------PDLADTFD----DAVRWLRSDIDSVTRVFTREVA-RSPAPWP----GFAMVAKEGGE---IDLTVKLELLWKGKCPRYHLDR 1878
            GL+CLER IP +I R ++ FA+ A +PFKVEV R GS   DS         WLD +       SSSS+   A GR            AR      +L  Y        P L    D     AVRWL++DI  V R+F RE++  S  P      G A     G +    D+TVKLELL +GKCPR+HLD+
Sbjct:  122 GLLCLERQIPDQIMRGLEEFADNA-APFKVEVLRPGSRRGDSDDADNEGEGWLDKIAASIGNSSSSSN---AGGRDNEGEERRSENLARRRVQGETLQDYESPLNLNLPSLQQQLDVEAQAAVRWLKADIKRVARIFAREISVLSDEPGETSLLGVATEPSAGKDERTFDVTVKLELLKRGKCPRFHLDK 307
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BLAST of mRNA_H-elongata_contig99216.17261.1 vs. uniprot
Match: D7FQC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC6_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.530e-6
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = -1 
Query:   76 MAERAASINVYD-FLGKESLAALSRMGFGDPKSQIGPHKYHGVAARTR 216
            M + A S   +D FLGKESL+AL RMGFG  ++++GPH+YHGVAARTR
Sbjct:    1 MGQHAGSTMEFDPFLGKESLSALGRMGFGKREARLGPHRYHGVAARTR 48
[Close]
BLAST of mRNA_H-elongata_contig99216.17261.1 vs. uniprot
Match: A0A6H5JI11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI11_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.540e-6
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = -1 
Query:   49 FLGKESLAALSRMGFGDPKSQIGPHKYHGVAARTRKRPTKAGKV 180
            FLGKESLAAL RMGFG  ++++GPH+YHGVAARTR   + AGKV
Sbjct:    6 FLGKESLAALGRMGFGKREARLGPHRYHGVAARTRL--SVAGKV 47
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99216.17261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FQC5_ECTSI1.000e-1537.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL98_9PHAE1.460e-1538.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQC6_ECTSI1.530e-662.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI11_9PHAE2.540e-670.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig99216contigH-elongata_contig99216:329..2206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1880
Cds size408
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931381.8172655-UTR-H-elongata_contig99216:328..17981622931381.8172655-UTR-H-elongata_contig99216:328..1798Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig99216 329..1798 +
1691679813.2365563-UTR-H-elongata_contig99216:328..17981691679813.2365563-UTR-H-elongata_contig99216:328..1798Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig99216 329..1798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931381.8325274-CDS-H-elongata_contig99216:1798..22061622931381.8325274-CDS-H-elongata_contig99216:1798..2206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99216 1799..2206 +
1691679813.2456634-CDS-H-elongata_contig99216:1798..22061691679813.2456634-CDS-H-elongata_contig99216:1798..2206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99216 1799..2206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig99216.17261.1prot_H-elongata_contig99216.17261.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig99216 1799..2206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig99216.17261.1

>prot_H-elongata_contig99216.17261.1 ID=prot_H-elongata_contig99216.17261.1|Name=mRNA_H-elongata_contig99216.17261.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MFAEEAVSPFKVEVFRGGSLSADSRWLDTLTEPFLARSSSSSFFCASGRQ
QAHARTETNEPSLDIYPDLADTFDDAVRWLRSDIDSVTRVFTREVARSPA
PWPGFAMVAKEGGEIDLTVKLELLWKGKCPRYHLDR
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mRNA from alignment at H-elongata_contig99216:329..2206+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig99216.17261.1 ID=mRNA_H-elongata_contig99216.17261.1|Name=mRNA_H-elongata_contig99216.17261.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1878bp|location=Sequence derived from alignment at H-elongata_contig99216:329..2206+ (Himanthalia elongata Himel1 dioecious)
GAAAAATAAAACAACAGCATTGCGAGTTTGTTTGAAGTAATTCAAATGCA
CCTTGCCAGCTTTGGTGGGCCTCTTTCTCGTTCGTGCAGCAACGCCGTGG
TATTTATGAGGCCCTATTTGCGACTTTGGGTCACCGAAGCCCATTCTGGA
TAGTGCGGCCAAGCTCTCTTTTCCCAGGAAGTCATAAACGTTTATGGACG
CAGCACGTTCGGCCATCTTGTTGGATAGGGTGGGTATGGGCTCTCGTGCT
TTCTTCTTGTGAACACGTCCTTCTCACCGTAATCCCGAACAGGAACTTTT
GACAAAATCCGCCGCATGCTACATGCTTTACCTACCTCATGTTCAGCTCC
CAACGAGAATAAGAAAGCCTTGATGGTGTGAGCTGGGTCTGCTGGTCAAA
GGATATAGAATGGAAGGATTCCCAAAGGTGCGTACGTAGCTTGTGATGAC
GTGACCATCCCATGCTGTGTTTGCGACATATTTTTTCGCACGTAAATTAC
TCAAACACGTCAGAGACAACGCTTGAAGTACAACGACTATTGAGTTGAGC
TATAGAACTACCGGTATAGTAGTATTCAGTCGATCAGGTGCCTCTTTCTC
TTTTAAAAGCATATGAACTCATTCAAAACATCCGAACATTCACACCTACG
GTATCAAGGAAAGAACGTTGGACCCATTCTCTGGACTATGTACGATGCCC
CACCTTCCGATAATACTTTAATTCATCGCGCTTGTTCCGCGTCGAGATTA
GCAAATCGCTCGAAGAATTGATGGTAACCTGGCAAAAATGGAGACAATGA
TCTCGTTATCGTCGACCTAAATGCAAAGGCACCACGGATCTCTTCTCCCT
TGTTATCATATCGTATACGATGCTGATGCTGACCGAGGGCTACCTTCGGG
AATCGAGTGCGGTACACCGTTGTGTGTAGTCATGACATATATTAGAGTAT
AACACTCTTGTCCTAAAAATAGTGGTCCTCGCGGCTTGTACTGGACAGGT
TCAAGTTCCGGTCAATTTTGGGATCATTGTGAGCCAGACTTTATAAACTA
CTTCCTTGCCTGTGCGCATTTTGTGTTTTTTCCCGACCGCACCGGGGACT
CTTACCCTTCACCGCGTGCCCCTGGCGTGTTTTTCAGTATGCCCTTGCCG
TAACGTCCGTATCTCCACCACTACCACGGGCTGCGGCGTTCCTTACCCCT
CCAGCCTTAACTCCTTCAAAACACGCGGCGCAAGGACCACCATCTCCGCT
GTTCCGATTCCCAGTTTTGGCTCTGTCTCGACCGTCCACGAGCAAACCCG
ACGAGAGCCTTCTCATCCAAACGAAGACGCTGCGTGTTCCGCTGGGAAAC
TTGTTGGGACCGGAAGGTAACGTTCGTTTGCCCACAGGAGCCCCCAACGA
GTTCGCGCAGGACCATGGGCTGATATGCCTGGAACGCACCATACCGGCTG
AAATATCTCGGAGCATAAAAATGTTCGCTGAGGAGGCGGTTTCTCCGTTT
AAGGTGGAGGTGTTCCGCGGAGGAAGCCTAAGCGCCGATAGCCGGTGGCT
GGACACCTTGACAGAGCCGTTTCTCGCCAGGTCGAGTTCGAGCTCATTTT
TCTGTGCCTCGGGTCGCCAGCAAGCGCACGCCCGCACAGAGACGAACGAG
CCCTCTCTGGATATCTACCCAGATCTGGCAGACACATTCGACGATGCGGT
GCGGTGGCTGAGGAGTGACATCGATAGCGTAACGAGGGTTTTTACCCGAG
AGGTTGCGAGGTCGCCGGCCCCGTGGCCCGGGTTCGCCATGGTGGCTAAG
GAGGGCGGGGAAATCGACCTGACGGTGAAATTGGAGCTCCTGTGGAAGGG
GAAATGTCCTCGATATCACCTTGATCGG
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Coding sequence (CDS) from alignment at H-elongata_contig99216:329..2206+

>mRNA_H-elongata_contig99216.17261.1 ID=mRNA_H-elongata_contig99216.17261.1|Name=mRNA_H-elongata_contig99216.17261.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig99216:329..2206+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGCTGAGGAGGCGGTTTCTCCGTTTAAGGTGGAGGTGTTCCGCGG
AGGAAGCCTAAGCGCCGATAGCCGGTGGCTGGACACCTTGACAGAGCCGT
TTCTCGCCAGGTCGAGTTCGAGCTCATTTTTCTGTGCCTCGGGTCGCCAG
CAAGCGCACGCCCGCACAGAGACGAACGAGCCCTCTCTGGATATCTACCC
AGATCTGGCAGACACATTCGACGATGCGGTGCGGTGGCTGAGGAGTGACA
TCGATAGCGTAACGAGGGTTTTTACCCGAGAGGTTGCGAGGTCGCCGGCC
CCGTGGCCCGGGTTCGCCATGGTGGCTAAGGAGGGCGGGGAAATCGACCT
GACGGTGAAATTGGAGCTCCTGTGGAAGGGGAAATGTCCTCGATATCACC
TTGATCGGATGTTCGCTGAGGAGGCGGTTTCTCCGTTTAAGGTGGAGGTG
TTCCGCGGAGGAAGCCTAAGCGCCGATAGCCGGTGGCTGGACACCTTGAC
AGAGCCGTTTCTCGCCAGGTCGAGTTCGAGCTCATTTTTCTGTGCCTCGG
GTCGCCAGCAAGCGCACGCCCGCACAGAGACGAACGAGCCCTCTCTGGAT
ATCTACCCAGATCTGGCAGACACATTCGACGATGCGGTGCGGTGGCTGAG
GAGTGACATCGATAGCGTAACGAGGGTTTTTACCCGAGAGGTTGCGAGGT
CGCCGGCCCCGTGGCCCGGGTTCGCCATGGTGGCTAAGGAGGGCGGGGAA
ATCGACCTGACGGTGAAATTGGAGCTCCTGTGGAAGGGGAAATGTCCTCG
ATATCACCTTGATCGG
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