mRNA_H-elongata_contig99147.17255.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig99147.17255.1
Unique NamemRNA_H-elongata_contig99147.17255.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig99147.17255.1 vs. uniprot
Match: D7FR36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR36_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 2.190e-32
Identity = 59/108 (54.63%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:  163 EYLIDLSRNTDTDGQLTAVGSCGLFRSWDSTTAEEIELLGSGCDDYDPCEGACGEFQECTMSFDFYVGASFYCADTCDPSPCAEDEVCELLSSICSGELASCPPVAYC 486
            EYLIDL+R +D  G L A G CG+FR WD     E+E    GCDDYDPC G CGEFQ C+ S+  Y  AS++C+DTCDPSPC+E E C L   +CS     C PVA C
Sbjct:    8 EYLIDLNRQSD--GSLRAAGICGVFREWDEADRVELE---EGCDDYDPCNGECGEFQVCSRSYFSYSDASYFCSDTCDPSPCSEGEECTLTYPVCSASEV-CGPVADC 109
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BLAST of mRNA_H-elongata_contig99147.17255.1 vs. uniprot
Match: A0A6H5L054_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L054_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 9.310e-27
Identity = 58/122 (47.54%), Postives = 71/122 (58.20%), Query Frame = 1 
Query:    1 EGESSNEDVVYQVEIIEAFKWGEDD--TSYTDGTMDISLTTGGNSALCGIFMEI--GEEYLIDLSRNTDTDGQLTAVGSCGLFRSWDSTTAEEIELLGSGCDDYDPCEGACGEFQECTMSFD 354
            +GE  N D +Y +E IE FK  ED     Y +      +TT GNS LCG++M+     EYLIDL+R +D  G L A G CG+FR WD     E+E    GCDDYDPC G CGEFQ C  + D
Sbjct:   11 DGEDINSDDIYTLETIEVFK-AEDPGPNEYDEAGSQFEITTAGNSGLCGVYMDADGSTEYLIDLNRQSD--GSLRAAGICGVFREWDEADRAELE---EGCDDYDPCNGECGEFQVCLCNKD 126
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BLAST of mRNA_H-elongata_contig99147.17255.1 vs. uniprot
Match: D8LCN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN7_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 2.340e-26
Identity = 69/167 (41.32%), Postives = 92/167 (55.09%), Query Frame = 1 
Query:   16 NEDVVYQVEIIEAFKWGEDDTSYTDGTMDISLTTGGNSALCGIFMEIGEEYLIDL---------SRNTDTDGQLTAVGSCGLFRSWDSTTAEEIELLGSGCDDYDPCEGACGEFQECTMSFDFYVGASFYCADTCD-PSPCAEDEVCELLSSICSGELASCPPVAYC 486
            NEDV + V++   +      +   DG  +IS  TGGNSA+CG+ + IGEEYL+ L         S    T GQLT VG C L R W     +E   L +GC +   C+ +CGEFQEC + ++  + + +YCADTCD P  CA++E C L    C    A CPPVA C
Sbjct:   67 NEDVTFTVQVNAVY------SGDVDGQDEISFVTGGNSAICGVDLTIGEEYLLGLYPAGDDPFDSTGGGTAGQLT-VGLCDLARVWSDVPDDEKADLEAGCGE---CDVSCGEFQECLL-YEDGLESEYYCADTCDDPDRCADNETCVLTEVACIR--APCPPVASC 220
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BLAST of mRNA_H-elongata_contig99147.17255.1 vs. uniprot
Match: D7G2B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B7_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.060e-21
Identity = 57/143 (39.86%), Postives = 78/143 (54.55%), Query Frame = 1 
Query:   88 DGTMDISLTTGGNSALCGIFMEIGEEYLIDLSRNTDTDGQLTAVGSCGLFRSWDSTTAEEIELLGSGCDDYDPCEGACGEFQECTMSFDFYV----------GASFYCADTCDPSPCAEDEVCELLSSICSGELASCPPVAYC 486
            D  ++I +TT  ++A CG+++++G EYL+DL R     G+L +VG+CG  +SW +  A+ I  LG      DPC  ACGE Q+C +  D             G  FYCADTC    C  +E C L  S C+G    CPPVA C
Sbjct:   49 DYPVEIEVTTSASAAHCGVYLQVGGEYLLDLYRYK---GELRSVGACGATQSWTTLPADRIATLGDINSACDPC-AACGESQDCLLYTDGDSTTTXXXVTGGGEEFYCADTCAAGVCGAEETCYLNESDCTG--GPCPPVAEC 185
[Close]
BLAST of mRNA_H-elongata_contig99147.17255.1 vs. uniprot
Match: A0A6H5JAS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAS0_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.840e-20
Identity = 54/143 (37.76%), Postives = 76/143 (53.15%), Query Frame = 1 
Query:   88 DGTMDISLTTGGNSALCGIFMEIGEEYLIDLSRNTDTDGQLTAVGSCGLFRSWDSTTAEEIELLGSGCDDYDPCEGACGEFQECTMSFDFYV----------GASFYCADTCDPSPCAEDEVCELLSSICSGELASCPPVAYC 486
            D  ++I +TT  ++A CG+++++G EYL+DL R     G+L +VG+CG  +SW +  A+ I  LG       PC  ACGE Q+C +  D             G  FYCADTC    C  +E C L  + C+     CPPVA C
Sbjct:   61 DYPVEIEVTTSASAADCGVYLQVGGEYLLDLYRYK---GELRSVGACGATQSWTTLPADRIATLGDINRACHPC-AACGESQDCLLYTDGDSTTTSSSVTGGGKEFYCADTCAAGVCGAEETCYLNEAHCTE--GPCPPVAEC 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99147.17255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FR36_ECTSI2.190e-3254.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L054_9PHAE9.310e-2747.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCN7_ECTSI2.340e-2641.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2B7_ECTSI1.060e-2139.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAS0_9PHAE3.840e-2037.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig99147contigH-elongata_contig99147:1176..2120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue1.6e-21
Seed eggNOG ortholog2880.D8LCN7
EggNOG OGs2D2W6@1,2SP8K@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931381.1499956-CDS-H-elongata_contig99147:1175..13281622931381.1499956-CDS-H-elongata_contig99147:1175..1328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99147 1176..1328 -
1691679812.8548813-CDS-H-elongata_contig99147:1175..13281691679812.8548813-CDS-H-elongata_contig99147:1175..1328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99147 1176..1328 -
1622931381.1888149-CDS-H-elongata_contig99147:1787..21201622931381.1888149-CDS-H-elongata_contig99147:1787..2120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99147 1788..2120 -
1691679812.8673437-CDS-H-elongata_contig99147:1787..21201691679812.8673437-CDS-H-elongata_contig99147:1787..2120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99147 1788..2120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig99147.17255.1prot_H-elongata_contig99147.17255.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig99147 1176..2120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig99147.17255.1

>prot_H-elongata_contig99147.17255.1 ID=prot_H-elongata_contig99147.17255.1|Name=mRNA_H-elongata_contig99147.17255.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
EGESSNEDVVYQVEIIEAFKWGEDDTSYTDGTMDISLTTGGNSALCGIFM
EIGEEYLIDLSRNTDTDGQLTAVGSCGLFRSWDSTTAEEIELLGSGCDDY
DPCEGACGEFQECTMSFDFYVGASFYCADTCDPSPCAEDEVCELLSSICS
GELASCPPVAYC
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mRNA from alignment at H-elongata_contig99147:1176..2120-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig99147.17255.1 ID=mRNA_H-elongata_contig99147.17255.1|Name=mRNA_H-elongata_contig99147.17255.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=945bp|location=Sequence derived from alignment at H-elongata_contig99147:1176..2120- (Himanthalia elongata Himel1 dioecious)
GAGGGAGAGAGTAGCAACGAAGACGTTGTGTACCAGGTTGAAATCATCGA
GGCTTTTAAGTGGGGGGAAGACGACACAAGTTATACCGACGGCACGATGG
ACATCAGCCTCACGACCGGCGGCAACAGCGCCCTCTGCGGGATATTTATG
GAGATAGGAGAGGAGTACCTCATCGACCTCTCCCGCAATACCGATACCGA
CGGTCAACTAACAGCAGTTGGCTCATGTGGCCTCTTTAGGTCTTGGGACT
CGACCACAGCTGAGGAAATTGAGCTCCTTGGTTCTGGGTGTGACGATTAT
GACCCATGTGAAGGTGCCTGCGGCGAATTTCAGGTAATCGCGCTTCTCTT
TGATGTCGAGTTATGAGAGTTAGACTAGTAGGTGACGGAGGGGCTTAACG
CACTCACAATATATTCATATAGATTATGCATAAGCTTGCTCTTTGGCCAT
CTTCCTCCAAATGAACTTACTACCGCAGAGTACCTTTCTTGTTAGATAAT
GGTTACACATACATAATAATGTAGGAGAAGTCGATAAAAATGGTTAATAC
GCCAGTACTATGAAGCAGCAGGTGCAGGCGTTCAGTAAAATCCAGAGCTT
CCACGGACCATCCGGAAACAGTCCATCGTCAATTAGGTGGTTGGTCATGG
CAATTTGGTTTTAAGGGGTCACCGACTGTGCATCTTCCCGAACAGCGCAC
ATACACGTTGGCACATATTGTTTCCGCTTGCCGCGTTTGACCAGCTTCGC
CATTTATTTGTCCGCGTTGACACGTTGATTGCTATCTTGCAGGAATGCAC
CATGAGCTTCGACTTCTATGTAGGGGCAAGCTTCTACTGTGCCGACACAT
GCGATCCGAGCCCGTGCGCTGAGGACGAAGTCTGCGAGCTTTTGTCCTCG
ATATGCTCCGGCGAGCTGGCTTCTTGTCCACCTGTCGCATATTGT
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Coding sequence (CDS) from alignment at H-elongata_contig99147:1176..2120-

>mRNA_H-elongata_contig99147.17255.1 ID=mRNA_H-elongata_contig99147.17255.1|Name=mRNA_H-elongata_contig99147.17255.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig99147:1176..2120- (Himanthalia elongata Himel1 dioecious)
GAGGGAGAGAGTAGCAACGAAGACGTTGTGTACCAGGTTGAAATCATCGA
GGCTTTTAAGTGGGGGGAAGACGACACAAGTTATACCGACGGCACGATGG
ACATCAGCCTCACGACCGGCGGCAACAGCGCCCTCTGCGGGATATTTATG
GAGATAGGAGAGGAGTACCTCATCGACCTCTCCCGCAATACCGATACCGA
CGGTCAACTAACAGCAGTTGGCTCATGTGGCCTCTTTAGGTCTTGGGACT
CGACCACAGCTGAGGAAATTGAGCTCCTTGGTTCTGGGTGTGACGATTAT
GACCCATGTGAAGGTGCCTGCGGCGAATTTCAGGAGGGAGAGAGTAGCAA
CGAAGACGTTGTGTACCAGGTTGAAATCATCGAGGCTTTTAAGTGGGGGG
AAGACGACACAAGTTATACCGACGGCACGATGGACATCAGCCTCACGACC
GGCGGCAACAGCGCCCTCTGCGGGATATTTATGGAGATAGGAGAGGAGTA
CCTCATCGACCTCTCCCGCAATACCGATACCGACGGTCAACTAACAGCAG
TTGGCTCATGTGGCCTCTTTAGGTCTTGGGACTCGACCACAGCTGAGGAA
ATTGAGCTCCTTGGTTCTGGGTGTGACGATTATGACCCATGTGAAGGTGC
CTGCGGCGAATTTCAGGAATGCACCATGAGCTTCGACTTCTATGTAGGGG
CAAGCTTCTACTGTGCCGACACATGCGATCCGAGCCCGTGCGCTGAGGAC
GAAGTCTGCGAGCTTTTGTCCTCGATATGCTCCGGCGAGCTGGCTTCTTG
TCCACCTGTCGCATATTGTGAATGCACCATGAGCTTCGACTTCTATGTAG
GGGCAAGCTTCTACTGTGCCGACACATGCGATCCGAGCCCGTGCGCTGAG
GACGAAGTCTGCGAGCTTTTGTCCTCGATATGCTCCGGCGAGCTGGCTTC
TTGTCCACCTGTCGCATATTGT
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