mRNA_H-elongata_contig98752.17216.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig98752.17216.1 vs. uniprot
Match: A0A6H5KN83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN83_9PHAE) HSP 1 Score: 236 bits (601), Expect = 6.510e-73 Identity = 151/344 (43.90%), Postives = 193/344 (56.10%), Query Frame = 1
Query: 1 MSGLDYSKWDKMAREVSDSDEDGDNIGNIPQVTAFDKPQSVTFGGAASS--ANPSQGSSNDISSYLHMSSEESTEAGPADKLS------------------VVGSDQTTDG-------------QLSYVWRQTRSEVTVVVPSPPEIRSVDVVVSLSPKPETIAEGVETRKEVIV-----------------------------LLEGELSFPVKL--DGERDVDWELKDFPGTIVSR-----AAHNVASSTPNASSA----AKQTSIPDRRGIEVTLAKHSPIPGVAFWWKSLLKGGPEIDVSAIQGRPVNKHRTAWEEALGMYKENIAKRKAQGKIPIDIGE 813
MSG+DYSKWDKMA E+SDSD+D GN P+VT FD+PQSVTFGG ++S A G+S+D ++ + S A PAD + ++ ++ T+ L YVWRQTR+EV VVVP P R+ DV VSL KPETIAEGV V V +LEGEL+F KL + E +V+WELKD+PGT V+R + V S+ P A +A A +S DRRG+E+ L KH P+P A WWKSLLKGGPEIDV+AI+GR N H++ WEEALGM+KE +A RK Q KI +D+ E
Sbjct: 1 MSGVDYSKWDKMASEMSDSDDDN---GNNPEVTTFDQPQSVTFGGTSASQAAEGWDGASDDSGAHPDTTPSSSGVAAPADGSTGAVAAAATGTTPTPQVKPLISDERLTENGAAVRGDANAGRQALQYVWRQTRAEVVVVVPVPAGTRAGDVEVSLRAKPETIAEGVADLIRVAVKATRGRDGAASRELGTAATAPGGGTKLVPVLEGELAFQAKLGAEDEGEVEWELKDYPGTAVARDDPDSSGDPVGSAPPPAPAAGAREASSSSNGDRRGVEIVLKKHCPVPNAAVWWKSLLKGGPEIDVAAIKGRATNNHQSVWEEALGMFKEQVAARKGQPKISVDMEE 341
BLAST of mRNA_H-elongata_contig98752.17216.1 vs. uniprot
Match: A0A836CJH1_9STRA (CS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJH1_9STRA) HSP 1 Score: 130 bits (326), Expect = 1.760e-32 Identity = 103/298 (34.56%), Postives = 153/298 (51.34%), Query Frame = 1
Query: 10 LDYSKWDKMAREVSDS-DEDGDNIGNIPQVTAFDKPQSVTFGGAASSANPS----------QGSSNDISSYLHMSSEESTEAGPADK------LSVVGSDQTTD-GQLSYVWRQTRSEVTVVVPSPPEIRSVDV---VVSLSPKPETIAEG-----VETRKEVIVLLEGELSFPVKLDGE--RDVDWELKDFPGTIVSRAAHNVASSTPNASSAAKQTSIPDRRGIEVTLAKHSPIPGVAFWWKSLLKGGPEIDVSAIQGRPV---NKHRTAWEEALGMYKENIAKRKAQGKIPIDIG 810
+DYSKWDKMA ++SDS DE+G G+ P VTAFD P SVT+GG + SS +++S A DK L+ G+ D G +Y W Q+R +V + V +PP R+ +V V S + P A+ ++ + +LLEG+L++PV LD + VDW L+D G A + S + S+A + + R I VTL KHSPI G A WWK +KGGP ID++AI+GR + + W+EA+ ++ + + K + + +DIG
Sbjct: 2 VDYSKWDKMAADMSDSEDEEG---GSKPVVTAFDNPTSVTWGGGDAPEEERLXXXXXXXXXXXXXXXXSSAGTPGADDSKRAALTDKPARLLTLTRNGAAVQDDCGAYTYFWSQSRGDVAITVVAPPGTRASEVEVKVTSDASAPTLAAQAPLGHHLKVSAKGAILLEGDLTYPVALDPDDPESVDWVLQDL-GLPARPAPESAVES--DVSTADQSSERSPARAITVTLRKHSPIAGAALWWKGAVKGGPTIDMAAIEGRDAKGASASQKVWDEAMEGFRARVKQLKLE-RTEVDIG 292
BLAST of mRNA_H-elongata_contig98752.17216.1 vs. uniprot
Match: W7TNN6_9STRA (CS-like domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNN6_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.010e-26 Identity = 82/267 (30.71%), Postives = 129/267 (48.31%), Query Frame = 1
Query: 10 LDYSKWDKMAREVSDSDEDGDNIGNIPQVTAFDKPQSVTFGGAASSANPSQGSSNDISSYLHMSSEESTEAGPADKLSVVGSDQTTDGQL--SYVWRQTRSEVTVVVPSPPEIRSVDVVVSLSPKPETIAEGVETRKEVIVLLEGELSFPVKLDGERDVDWELKDFPGTIVSRAAHNVASSTPNASSAAKQTSIPDRRGIEVTLAKHSPIPGVAFWWKSLLKGGPEIDVSAIQGRPVNKHRTAWEEALGMYKENIAKRKAQGKIPID 804
+DYSKWD + + SD DED + P+VT F++P SVT GG + I S S ST PA ++ + +GQ ++ WRQ R E + + +PP R+ DV V+ + ++ + T V VL+EG L+ P++L+ +V+WE+ G + R + V+L K +P P + WW + G EID S I GR +N + AWEEA ++E++A+R AQG + ++
Sbjct: 6 IDYSKWDHL--DTSD-DEDEEEKRGPPRVTHFNEPMSVTVGGH----------DHLIPSRSPAPSPSSTTPHPASRIEDISE----NGQSFPTFTWRQDRGEAIMHIWAPPCTRAKDVQVTYTRDTNHLSVRITTPTAVPVLVEGPLANPIQLEEGEEVEWEMVGEGG---------------------RXXXXXXXRAVRVSLIKSTPRPDMVHWWSRVFVGDDEIDTSRIAGRKMN-FQGAWEEAQRRFREDVARRNAQGPVEVE 233
BLAST of mRNA_H-elongata_contig98752.17216.1 vs. uniprot
Match: A0A1J4MGJ4_9CRYT (Nuclear move domain-containing protein n=1 Tax=Cryptosporidium ubiquitum TaxID=857276 RepID=A0A1J4MGJ4_9CRYT) HSP 1 Score: 91.7 bits (226), Expect = 1.960e-18 Identity = 81/272 (29.78%), Postives = 121/272 (44.49%), Query Frame = 1
Query: 1 MSGLDYSKWDKMAREVSDSDEDGDNIGNIPQVTAFDKPQSVTFGGAASSANPSQGSSNDISSYLHMSSEESTEAGPADKLSVVGSDQTTDGQLS-----YVWRQTRSEVTVVVPSPPEIRSVDVVVSLSPKPETIAEGVETRKEVIVLLEGELSFPVKLDGERDVDWELKDFPGTIVSRAAHNVASSTPNASSAAKQTSIPDRRGIEVTLAKHSPIPGVAFWWKSLLKGGPEIDVSAIQ--GRPVNKHRT-----AWEEALGMYKENIAKRK 780
MSG+DYSKWDK+ E+S SDE+ +G+ VT FD PQS+T GG S S SSN + L T++ + V+ D G S Y W QT + +T+++ P ++ D+ V+++ T+ G ET +L E E + VK D + + W +K+ A N S R + + L K + WWK + KGG E D+S P ++ R AWEEA ++ I R+
Sbjct: 1 MSGIDYSKWDKI--EIS-SDEESGKLGSKCNVTRFDSPQSITIGGQRESKEDSLVSSNILVDDLK------TKSVLVSREKVISLDDYVFGGKSACGKDYYWTQTENGLTIILEIDPGTQNKDLKVNVTEDKVTVTHGSET-----ILFE-EFEYGVK-DDDNTIFWSVKEVESL---NGAQNKRS-----------------RMLVLELEKKELDTSIRLWWKKIFKGGIEADISKFSRFSSPKSEERNRKFLEAWEEAHNEFRNKIKNRQ 236
BLAST of mRNA_H-elongata_contig98752.17216.1 vs. uniprot
Match: A0A2P4YYV1_9CRYT (CS domain protein n=4 Tax=Cryptosporidium TaxID=5806 RepID=A0A2P4YYV1_9CRYT) HSP 1 Score: 86.3 bits (212), Expect = 2.050e-16 Identity = 75/274 (27.37%), Postives = 122/274 (44.53%), Query Frame = 1
Query: 1 MSGLDYSKWDKMAREVSDSDEDGDNIGNIPQVTAFDKPQSVTFGGAASSANPSQGSSNDISSYLHMSSEESTEAGPADKLSVVGSDQTTDGQLS-----YVWRQTRSEVTVVVPSPPEIRSVDVVVSLSPKPETIAEGVETRKEVIVLLEGELSFPVKLDGERDVDWELKDFPG--TIVSRAAHNVASSTPNASSAAKQTSIPDRRGIEVTLAKHSPIPGVAFWWKSLLKGGPEIDVSAI-------QGRPVNKHRTAWEEALGMYKENIAKRK 780
MSG+DYSKWDK+ E+S SDE+ + + VT FD P S+TFGG S N ++S + + + E G + ++ + G S Y W QT +++T+V+ PE++S D V+++ TI G+ET +LLE + + VK D + + W +KD + ++ N + + + L K + WWK + KGG E D+S + K WE+A ++ I R+
Sbjct: 1 MSGIDYSKWDKI--EIS-SDEESEKSVSRCNVTRFDSPHSITFGGHIESEED-----NKVNSDVKVEEFKKIEPGHVSREKILSLNDYVFGGKSKNGKNYYWTQTENDLTIVIEISPEMQSKDFKVNVTESDITIMYGLET-----ILLE-KFEYEVKYD-DNTIFWSIKDVESFDKVQNKRIIN--------------------KMLVLELEKKELNNSIRIWWKRIFKGGIETDISKFNRFTSSNKEERNKKFLQVWEKAHDEFRNKIKNRQ 239
BLAST of mRNA_H-elongata_contig98752.17216.1 vs. uniprot
Match: A0A4D9D0Z5_9STRA (CS domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0Z5_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 7.570e-16 Identity = 53/180 (29.44%), Postives = 87/180 (48.33%), Query Frame = 1
Query: 268 DGQLS--YVWRQTRSEVTVVVPSPPEIRSVDVVVSLSPKPETIAEGVETRKEVIVLLEGELSFPVKLDGERDVDWELKDFPGTIVSRAAHNVASSTPNASSAAKQTSIPDRRGIEVTLAKHSPIPGVAFWWKSLLKGGPEIDVSAIQGRPVNKHRTAWEEALGMYKENIAKRKAQGKIPI 801
+GQ S + WRQ + EV + + + P R+ DV V+ S ++ + T V VL+EG L+ P++++ E +V+WE+ G + + V+L K P + WW + G EID S I GR +N + AWEEA ++E++A+R AQG + +
Sbjct: 60 NGQSSPNFAWRQDKEEVILHIWAAPSTRAKDVQVTYSRDTNHLSVRITTPTAVPVLVEGTLANPIQVEEEEEVEWEMVGEGG---------------------RXXXXXXXXAVRVSLLKAVPRSDMVHWWSRVFVGDDEIDTSRIAGRKMN-FQGAWEEAQRKFREDVARRNAQGPVEV 217
BLAST of mRNA_H-elongata_contig98752.17216.1 vs. uniprot
Match: X6NBK4_RETFI (CS domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NBK4_RETFI) HSP 1 Score: 74.3 bits (181), Expect = 1.070e-11 Identity = 82/318 (25.79%), Postives = 128/318 (40.25%), Query Frame = 1
Query: 1 MSGLDYSKWDKMAREVSDSDEDGDNIGNIPQVTAFDKPQSVTFGGAASSANPSQGSSNDISSYLHMSSEESTEAGPADKLSVVGS------DQ------------------------------TTDGQLS--YVWRQTRSEVTVVVPSPPEIRSVDVVVSLSPKPETIAEGVETRKEVIVLL--------EGELSFPVKLDGERD--VDWELKDFPGTIVSRAAHNVASSTPNASSAAKQTSIPDRRGIEVTLAKHSPIPGVAFWWKSLLKGGPEIDVSAIQGRPVNKH--RTAWEEALGMYKENIAKRKAQGKIPID 804
M+G++YSKW+K+A + SDE+ + N P VT D+P SVT G + NPS S+N ++ + S + T P K S + DQ T +G + Y+W QTR EV + + + P LS K ++I K + + ELS+ + E D ++WE+K FP + A + + + + L K V WW ++ KG P IDV+AI+ R + R W+ A +KE + + + Q I ID
Sbjct: 1 MTGINYSKWNKIAEALDSSDEE--SASNTPHVTKLDRPSSVTIGPTGVTINPSP-SNNQSTNANNKSVVKKTIENPTAKQSYNSTVPRQQKDQKATIVKPQNNEIIESKVKTKTLSELKAEVLTVNGGETDEYMWSQTRDEVVLFIKNIP----------LSTKAKSIKIQYNEEKNTVFIQCLDKILYNNKELSYNIVKTKEEDCGLEWEIKTFPFCDTNGIASQM-------------------KLLTIYLKKKEFSANVITWWGNVFKGDPSIDVAAIKERKTDAKTMRNIWQSAHESFKEKVKQFQPQ-TIEID 285
BLAST of mRNA_H-elongata_contig98752.17216.1 vs. uniprot
Match: A0A7S0AUT3_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0AUT3_9DINO) HSP 1 Score: 71.6 bits (174), Expect = 3.010e-11 Identity = 59/183 (32.24%), Postives = 81/183 (44.26%), Query Frame = 1
Query: 283 YVWRQTRSEVTVVVPSPPEIRSVDVVVSLSPKPETI-AEGVETRKEVIVLLEGELSFPVKLDGERDVDWELKDFPGTIVSRAAHNVASSTPNASSAAKQTSIPDRRGIEVTLAKHSPIPG---VAFWWKSLLKGGPEIDVSAIQGRPVNKHRT---AWEEALGMYKENIAKRKAQGKIPIDIG 810
Y W QT+ + V P +S D+ V +S +I A G +LEGE F V D D DWE++ G RR + +T+ K + +PG V WW+ +LKG PEIDVS IQGR T AW +A ++E++ RK +PIDIG
Sbjct: 67 YFWSQTKDSIEVNAFVPEGTKSQDISVQVSETQVSIQAHGAS-------ILEGEWEFKVIPD--EDPDWEIRTLNG----------------------------RRAVCLTVKK-ADMPGGMSVIVWWRKVLKGEPEIDVSNIQGRKREASETFAKAWRDAHVQFRESVKNRKP---VPIDIG 208
BLAST of mRNA_H-elongata_contig98752.17216.1 vs. uniprot
Match: A0A7S0TY80_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TY80_HEMAN) HSP 1 Score: 69.3 bits (168), Expect = 1.040e-10 Identity = 55/184 (29.89%), Postives = 85/184 (46.20%), Query Frame = 1
Query: 280 SYVWRQTRSEVTVVVPSPPEIRSVDVVVSLSPKPETI-AEGVETRKEVIVLLEGELSFPVKLDGERDVDWELKDF-PGTIVSRAAHNVASSTPNASSAAKQTSIPDRRGIEVTLAKHSPIPGVAFWWKSLLKGGPEIDVSAIQGRPVNK--HRTAWEEALGMYKENIAKRKAQGKIPIDIGEDG 819
+++W Q ++ V V +P R+ V VS+ TI +G + GEL++PV LD E VDWEL+D+ G IV + +P + + S V WWK + KG EIDV+AI+ RP N+ + AW+EA +++ + K +IP+ G G
Sbjct: 11 THLWSQDKTHAIVGVFAPANTRAKSVSVSVKGAHVTIDIKGNPDGRSP--WFAGELAYPVGLDEEEGVDWELQDYGEGRIVKVTL---------------EKKLPGMSSLPALQVESS----VVMWWKRIFKGDEEIDVTAIEDRPANREANANAWKEAHEKFRDMV-KNHTPMEIPMGDGGGG 172
BLAST of mRNA_H-elongata_contig98752.17216.1 vs. uniprot
Match: A0A7S0KK22_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KK22_9CHLO) HSP 1 Score: 65.9 bits (159), Expect = 9.040e-9 Identity = 53/186 (28.49%), Postives = 81/186 (43.55%), Query Frame = 1
Query: 268 DGQLSYVWRQTRSEVTVVVPSPPEIRSVDVVVSLSPKPETIA---EGVETRKEVIVLLEGELSFPVKLDGERDV---------DWELKDFPGTIVSRAAHNVASSTPNASSAAKQTSIPDRRGIEVTLAKHSPIPGVAFWWKSLLKGGPEIDVSAIQGRPVNKH---RTAWEEALGMYKENIAKRK 780
DG + Y WRQ E T V P+ ++ DV V +S + I+ +G E R+ E++ + + E D+ DWE+ DF G H + RR + VT+ K S + WW+S +KGGPE+D + R K +T W +A M++E IA R+
Sbjct: 144 DGAVRYFWRQDAKEATASVVVAPKTKAKDVRVDVSAREVKISVMKDGGEIREVFRGEWAHEIAEEPRDEDEDDIGCRAAPTFGDWEITDFEG-------HGDDA----------------RRVVRVTVRKKSS-DMLVHWWRSCVKGGPEVDPMTFEDRSATKASQAQTTWAQAQAMFRERIANRE 305 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig98752.17216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig98752.17216.1 >prot_H-elongata_contig98752.17216.1 ID=prot_H-elongata_contig98752.17216.1|Name=mRNA_H-elongata_contig98752.17216.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=274bp MSGLDYSKWDKMAREVSDSDEDGDNIGNIPQVTAFDKPQSVTFGGAASSAback to top mRNA from alignment at H-elongata_contig98752:708..1772- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig98752.17216.1 ID=mRNA_H-elongata_contig98752.17216.1|Name=mRNA_H-elongata_contig98752.17216.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1065bp|location=Sequence derived from alignment at H-elongata_contig98752:708..1772- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig98752:708..1772- >mRNA_H-elongata_contig98752.17216.1 ID=mRNA_H-elongata_contig98752.17216.1|Name=mRNA_H-elongata_contig98752.17216.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1644bp|location=Sequence derived from alignment at H-elongata_contig98752:708..1772- (Himanthalia elongata Himel1 dioecious)back to top |