mRNA_H-elongata_contig9861.17206.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9861.17206.1
Unique NamemRNA_H-elongata_contig9861.17206.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig9861.17206.1 vs. uniprot
Match: A0A6H5KA14_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA14_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.680e-27
Identity = 54/75 (72.00%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    1 EMLRYRGINSIDIDGNPLAWWDEHQSTLPLLRELATRVLCVPASSASSERLFSKAGLTLTKKHSKLKLPRVAQLV 225
            E+LRYRG+ S++ DGNPL WWD+H++T PLLREL+ R+LCVPASSA+SERLFSKAGLTLTK+ S L   RVAQLV
Sbjct:  486 EVLRYRGVTSMNPDGNPLTWWDQHKATFPLLRELSHRILCVPASSAASERLFSKAGLTLTKQRSLLAGNRVAQLV 560          
BLAST of mRNA_H-elongata_contig9861.17206.1 vs. uniprot
Match: D8LDT4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT4_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.440e-15
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 EMLRYRGINSIDIDGNPLAWWDEHQS--TLPLLRELATRVLCVPASSASSERLFSKAGLTLTKKHSKLKLPRVA 216
            E+LRYR ++ ID + +PL WW++ Q   + P LREL  RVLCVPA SASS+R+FSK GL    K ++L+  RVA
Sbjct:  824 EVLRYRALDKIDSEADPLLWWEQEQQRWSFPFLRELVMRVLCVPACSASSKRVFSKTGLVDNSKRARLRGSRVA 897          
BLAST of mRNA_H-elongata_contig9861.17206.1 vs. uniprot
Match: A0A6H5KHJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.770e-15
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    1 EMLRYRGINSIDIDGNPLAWWDEHQS--TLPLLRELATRVLCVPASSASSERLFSKAGLTLTKKHSKLKLPRVAQ 219
            E+LRYR ++ ID + +PL WW++ Q   + P LR+LA RVLCVPA SASS+RLF K G+    K ++L+  RVAQ
Sbjct:  390 EVLRYRALDKIDSESDPLLWWEQGQQRWSFPSLRQLAMRVLCVPACSASSKRLFFKTGVVGNSKRARLRGSRVAQ 464          
BLAST of mRNA_H-elongata_contig9861.17206.1 vs. uniprot
Match: UPI001E1CD40C (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CD40C)

HSP 1 Score: 70.5 bits (171), Expect = 7.130e-13
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    1 EMLRYRGINSIDIDGNPLAWWDEHQSTLPLLRELATRVLCVPASSASSERLFSKAGLTLTKKHSKLKLPRVAQ 219
            E+ RY   N I  DG+PLAWW EH    P L +LA R LC  ASS  SERLFSKAG  ++ + S +K   +A+
Sbjct:  177 ELKRYFEENHISRDGDPLAWWKEHDMYFPKLSDLAKRFLCTSASSVPSERLFSKAGELISHRRSNIKDTNLAR 249          
BLAST of mRNA_H-elongata_contig9861.17206.1 vs. uniprot
Match: UPI001E1D12E4 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1D12E4)

HSP 1 Score: 70.1 bits (170), Expect = 2.220e-12
Identity = 35/67 (52.24%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    1 EMLRYRGINSIDIDGNPLAWWDEHQSTLPLLRELATRVLCVPASSASSERLFSKAGLTLTKKHSKLK 201
            E+ RY   N I  DG+PLAWW EH    P L +LA R LC  ASS  SERLFSKAG  ++ + S +K
Sbjct:  308 ELKRYFEENHISRDGDPLAWWKEHDMYFPKLSDLAKRFLCTSASSVPSERLFSKAGELISHRRSNIK 374          
BLAST of mRNA_H-elongata_contig9861.17206.1 vs. uniprot
Match: UPI001E1D0815 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1D0815)

HSP 1 Score: 70.1 bits (170), Expect = 2.500e-12
Identity = 35/67 (52.24%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    1 EMLRYRGINSIDIDGNPLAWWDEHQSTLPLLRELATRVLCVPASSASSERLFSKAGLTLTKKHSKLK 201
            E+ RY   N I  DG+PLAWW EH    P L +LA R LC  ASS  SERLFSKAG  ++ + S +K
Sbjct:  424 ELKRYFEENHISRDGDPLAWWKEHDMYFPKLSDLAKRFLCTSASSVPSERLFSKAGELISHRRSNIK 490          
BLAST of mRNA_H-elongata_contig9861.17206.1 vs. uniprot
Match: A0A8C1JAT0_CYPCA (BED-type domain-containing protein n=6 Tax=Osteoglossocephalai TaxID=1489341 RepID=A0A8C1JAT0_CYPCA)

HSP 1 Score: 69.3 bits (168), Expect = 4.730e-12
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 EMLRYRGINSIDI-DGNPLAWWDEHQSTLPLLRELATRVLCVPASSASSERLFSKAGLTLTKKHSKLKLPRVAQLV 225
            EM RY+    + + +G+PL+WW EHQ+  PL+  LA   LC+P +S SSER+FSKAG  +T + S L    V QL+
Sbjct:  537 EMSRYKEAPPLSLAEGSPLSWWKEHQNEYPLMSRLAKVYLCIPGTSVSSERVFSKAGDIVTAQRSVLSSKHVDQLL 612          
BLAST of mRNA_H-elongata_contig9861.17206.1 vs. uniprot
Match: UPI000B933A0F (zinc finger BED domain-containing protein 1-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B933A0F)

HSP 1 Score: 65.9 bits (159), Expect = 5.800e-12
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 EMLRYRGINSIDIDGNPLAWWDEHQSTLPLLRELATRVLCVPASSASSERLFSKAGLTLTKKHSKLKLPRVAQLV 225
            E  RY     I+ + +P AWW +H++  P L  LA ++LC+PASSASSER+FS AG  L+ K +++    ++ LV
Sbjct:   54 EFSRYMAEFQINHNADPCAWWKDHENIYPTLAVLAKQILCIPASSASSERVFSTAGNILSPKRNRITPCHLSALV 128          
BLAST of mRNA_H-elongata_contig9861.17206.1 vs. uniprot
Match: UPI00106C4427 (zinc finger BED domain-containing protein 1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C4427)

HSP 1 Score: 67.8 bits (164), Expect = 1.430e-11
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:    1 EMLRYRGINSIDIDGNPLAWWDEHQSTLPLLRELATRVLCVPASSASSERLFSKAGLTLTKKHSKLKLPRVAQLV 225
            E+ RY    +ID D +PL WW  H++  PLL +   R L +PASSA +ERLFSKAG  +T K   LK  +   LV
Sbjct:  282 EIARYLQFPTIDGDDDPLQWWKFHENDFPLLSQYVRRYLAIPASSAPTERLFSKAGQIVTAKRVNLKPSQANMLV 356          
BLAST of mRNA_H-elongata_contig9861.17206.1 vs. uniprot
Match: A0A6P6MPP8_CARAU (zinc finger BED domain-containing protein 1-like n=1 Tax=Carassius auratus TaxID=7957 RepID=A0A6P6MPP8_CARAU)

HSP 1 Score: 67.0 bits (162), Expect = 2.920e-11
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    1 EMLRYRGINSIDIDG--NPLAWWDEHQSTLPLLRELATRVLCVPASSASSERLFSKAGLTLTKKHSKLKLPRVAQLV 225
            EM     + ++++DG  NPL WW +H++  P +  LA + LC+PA+SA SER FS +G  +T + S LK  RV QLV
Sbjct:  325 EMELNSYLQAVEVDGETNPLEWWRQHEANFPRVASLAKKYLCIPATSAPSERAFSTSGNIVTCRRSALKPERVDQLV 401          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9861.17206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA14_9PHAE2.680e-2772.00Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
D8LDT4_ECTSI1.440e-1552.70Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KHJ9_9PHAE4.770e-1552.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
UPI001E1CD40C7.130e-1349.32E3 SUMO-protein ligase ZBED1-like n=1 Tax=Portunus... [more]
UPI001E1D12E42.220e-1252.24E3 SUMO-protein ligase ZBED1-like n=1 Tax=Portunus... [more]
UPI001E1D08152.500e-1252.24E3 SUMO-protein ligase ZBED1-like n=1 Tax=Portunus... [more]
A0A8C1JAT0_CYPCA4.730e-1246.05BED-type domain-containing protein n=6 Tax=Osteogl... [more]
UPI000B933A0F5.800e-1242.67zinc finger BED domain-containing protein 1-like n... [more]
UPI00106C44271.430e-1146.67zinc finger BED domain-containing protein 1-like n... [more]
A0A6P6MPP8_CARAU2.920e-1144.16zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9861contigH-elongata_contig9861:8287..8511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score65.1
Seed ortholog evalue1.6e-08
Seed eggNOG ortholog400682.PAC_15704948
EggNOG free text desc.RNA polymerase II regulatory region DNA binding
EggNOG OGs39RW9@33154,3BH13@33208,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size222
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931376.4679012-UTR-H-elongata_contig9861:8286..82891622931376.4679012-UTR-H-elongata_contig9861:8286..8289Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9861 8287..8289 +
1691679811.0499415-UTR-H-elongata_contig9861:8286..82891691679811.0499415-UTR-H-elongata_contig9861:8286..8289Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9861 8287..8289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931376.4787552-CDS-H-elongata_contig9861:8289..85111622931376.4787552-CDS-H-elongata_contig9861:8289..8511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9861 8290..8511 +
1691679811.0612345-CDS-H-elongata_contig9861:8289..85111691679811.0612345-CDS-H-elongata_contig9861:8289..8511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9861 8290..8511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9861.17206.1prot_H-elongata_contig9861.17206.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9861 8290..8511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9861.17206.1

>prot_H-elongata_contig9861.17206.1 ID=prot_H-elongata_contig9861.17206.1|Name=mRNA_H-elongata_contig9861.17206.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MLRYRGINSIDIDGNPLAWWDEHQSTLPLLRELATRVLCVPASSASSERL
FSKAGLTLTKKHSKLKLPRVAQLV
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mRNA from alignment at H-elongata_contig9861:8287..8511+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9861.17206.1 ID=mRNA_H-elongata_contig9861.17206.1|Name=mRNA_H-elongata_contig9861.17206.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig9861:8287..8511+ (Himanthalia elongata Himel1 dioecious)
GAAATGCTCCGGTACCGTGGTATCAACTCCATTGACATAGACGGTAATCC GTTGGCGTGGTGGGATGAACACCAATCGACCCTTCCACTTCTCCGGGAAC TCGCTACGCGTGTCCTGTGCGTCCCGGCTTCGTCGGCATCGTCAGAACGT TTGTTCTCCAAGGCAGGGCTTACCTTGACGAAGAAACACTCTAAGCTCAA GTTACCAAGGGTGGCCCAGCTGGTC
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Coding sequence (CDS) from alignment at H-elongata_contig9861:8287..8511+

>mRNA_H-elongata_contig9861.17206.1 ID=mRNA_H-elongata_contig9861.17206.1|Name=mRNA_H-elongata_contig9861.17206.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig9861:8287..8511+ (Himanthalia elongata Himel1 dioecious)
ATGCTCCGGTACCGTGGTATCAACTCCATTGACATAGACGGTAATCCGTT
GGCGTGGTGGGATGAACACCAATCGACCCTTCCACTTCTCCGGGAACTCG
CTACGCGTGTCCTGTGCGTCCCGGCTTCGTCGGCATCGTCAGAACGTTTG
TTCTCCAAGGCAGGGCTTACCTTGACGAAGAAACACTCTAAGCTCAAGTT
ACCAAGGGTGGCCCAGCTGGTCATGCTCCGGTACCGTGGTATCAACTCCA
TTGACATAGACGGTAATCCGTTGGCGTGGTGGGATGAACACCAATCGACC
CTTCCACTTCTCCGGGAACTCGCTACGCGTGTCCTGTGCGTCCCGGCTTC
GTCGGCATCGTCAGAACGTTTGTTCTCCAAGGCAGGGCTTACCTTGACGA
AGAAACACTCTAAGCTCAAGTTACCAAGGGTGGCCCAGCTGGTC
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