mRNA_H-elongata_contig98551.17201.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig98551.17201.1
Unique NamemRNA_H-elongata_contig98551.17201.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig98551.17201.1 vs. uniprot
Match: D8LRS3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRS3_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 5.300e-28
Identity = 61/85 (71.76%), Postives = 74/85 (87.06%), Query Frame = 1 
Query:    1 DSSADEASLTDQLAHFEMEAETLKKTRIAQQEKFRKLSEEVIHLSVVLGEDSDANLAEWRDVESSLTQERLEAFSKKKMELNKAT 255
            DSS D+ SLTDQLA++EMEA+ +KK   AQQEKF KLSEE++H+S+VLG+DSDA+LAEWRD+ESSLT ERL+AF  KK ELNKAT
Sbjct:   94 DSSTDDMSLTDQLAYYEMEADAIKKMCKAQQEKFEKLSEELVHMSMVLGDDSDADLAEWRDLESSLTNERLQAFKDKKTELNKAT 178
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig98551.17201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRS3_ECTSI5.300e-2871.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig98551contigH-elongata_contig98551:181..658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue4.2e-24
Seed eggNOG ortholog2880.D8LRS3
KEGG koko:K16732
EggNOG free text desc.microtubule binding
EggNOG OGsKOG4302@1,KOG4302@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size266
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931376.0725114-CDS-H-elongata_contig98551:180..2551622931376.0725114-CDS-H-elongata_contig98551:180..255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98551 181..255 +
1691679810.8517776-CDS-H-elongata_contig98551:180..2551691679810.8517776-CDS-H-elongata_contig98551:180..255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98551 181..255 +
1622931376.0908518-CDS-H-elongata_contig98551:469..6581622931376.0908518-CDS-H-elongata_contig98551:469..658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98551 470..658 +
1691679810.8703053-CDS-H-elongata_contig98551:469..6581691679810.8703053-CDS-H-elongata_contig98551:469..658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98551 470..658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig98551.17201.1prot_H-elongata_contig98551.17201.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig98551 181..658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig98551.17201.1

>prot_H-elongata_contig98551.17201.1 ID=prot_H-elongata_contig98551.17201.1|Name=mRNA_H-elongata_contig98551.17201.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
DSSADEASLTDQLAHFEMEAETLKKTRIAQQEKFRKLSEEVIHLSVVLGE
DSDANLAEWRDVESSLTQERLEAFSKKKMELNKATVN*
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mRNA from alignment at H-elongata_contig98551:181..658+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig98551.17201.1 ID=mRNA_H-elongata_contig98551.17201.1|Name=mRNA_H-elongata_contig98551.17201.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=478bp|location=Sequence derived from alignment at H-elongata_contig98551:181..658+ (Himanthalia elongata Himel1 dioecious)
GACTCTTCGGCGGATGAAGCGAGCCTTACGGATCAACTGGCGCACTTCGA
GATGGAGGCCGAAACTCTGAAGAAGGTGACCCACTTCTTGTATTGTTAGC
CTTATGATATGATGTGTCGAGCTTACTGGAGTTCAAAACCAGCGCCTTAT
TTCAGTGCTTCTGCATACACTGGTCTGGTGCTCTTATCAAAAGGGCTACT
TCTACTGTATACCGGAGAGAGTCTTGACATAAGAGTCGCTTGACCTTTTG
ACTTGTGATATCTCGGATGTGCTTCCGGATACAACGCAGACGCGCATCGC
ACAGCAGGAGAAGTTCCGGAAGCTCTCGGAAGAAGTTATTCATTTGAGCG
TGGTTCTTGGAGAAGACTCAGACGCTAACCTGGCGGAGTGGCGCGATGTG
GAATCTTCCTTGACCCAAGAGAGGCTAGAGGCGTTTAGCAAAAAGAAAAT
GGAACTCAACAAGGCCACGGTAAACTAG
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Coding sequence (CDS) from alignment at H-elongata_contig98551:181..658+

>mRNA_H-elongata_contig98551.17201.1 ID=mRNA_H-elongata_contig98551.17201.1|Name=mRNA_H-elongata_contig98551.17201.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig98551:181..658+ (Himanthalia elongata Himel1 dioecious)
GACTCTTCGGCGGATGAAGCGAGCCTTACGGATCAACTGGCGCACTTCGA
GATGGAGGCCGAAACTCTGAAGAAGGACTCTTCGGCGGATGAAGCGAGCC
TTACGGATCAACTGGCGCACTTCGAGATGGAGGCCGAAACTCTGAAGAAG
ACGCGCATCGCACAGCAGGAGAAGTTCCGGAAGCTCTCGGAAGAAGTTAT
TCATTTGAGCGTGGTTCTTGGAGAAGACTCAGACGCTAACCTGGCGGAGT
GGCGCGATGTGGAATCTTCCTTGACCCAAGAGAGGCTAGAGGCGTTTAGC
AAAAAGAAAATGGAACTCAACAAGGCCACGGTAAACTAGACGCGCATCGC
ACAGCAGGAGAAGTTCCGGAAGCTCTCGGAAGAAGTTATTCATTTGAGCG
TGGTTCTTGGAGAAGACTCAGACGCTAACCTGGCGGAGTGGCGCGATGTG
GAATCTTCCTTGACCCAAGAGAGGCTAGAGGCGTTTAGCAAAAAGAAAAT
GGAACTCAACAAGGCCACGGTAAACTAG
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