mRNA_H-elongata_contig98312.17181.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig98312.17181.1
Unique NamemRNA_H-elongata_contig98312.17181.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig98312.17181.1 vs. uniprot
Match: D8LG86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG86_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 4.980e-38
Identity = 100/174 (57.47%), Postives = 121/174 (69.54%), Query Frame = 1 
Query:    1 QRALEIKRLKQKNQELARARESNARMQGKNATNHERAVAERKIKLKNDLQSTKANLEKERKTNAKSSREQRQALQMTYQEIRAQNAMENRQRRSMIRKQREDAXXXXXXXXXXXXAQQQGEQL-RTVLHGKTTQDAERMIEKMEKDEDALIERLKKIQEDQRRAYQLLQESLES 519
            QRA+EIKRLKQ+NQ+LA  RESNAR QGKN++NHERA+A+RK K ++DLQSTKANLEK+R+TNA        ALQMTYQ        ENR+R  M+R    +A        XXXX         R       TQ+AERMIEKME+DED LIERLKK+Q++QR+AY+LL ESLES
Sbjct:   88 QRAMEIKRLKQQNQQLALERESNARTQGKNSSNHERALAQRKQKQQHDLQSTKANLEKQRRTNAXXXXXXXXALQMTYQXXXXXXXAENRRRTEMVRXXXXEARLKKEAEQXXXXXXXXXXXXXRIEAEXXXTQEAERMIEKMEQDEDVLIERLKKVQDEQRKAYELLHESLES 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig98312.17181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG86_ECTSI4.980e-3857.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig98312contigH-elongata_contig98312:596..2311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue8.3e-32
Seed eggNOG ortholog2880.D8LG86
EggNOG OGs2AE5J@1,2RYV4@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-17_004140.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size522
Cds size522
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig98312.17181.1prot_H-elongata_contig98312.17181.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig98312 596..2311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931374.099029-CDS-H-elongata_contig98312:595..7451622931374.099029-CDS-H-elongata_contig98312:595..745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98312 596..745 +
1691679809.9855394-CDS-H-elongata_contig98312:595..7451691679809.9855394-CDS-H-elongata_contig98312:595..745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98312 596..745 +
1622931374.1131802-CDS-H-elongata_contig98312:1121..12081622931374.1131802-CDS-H-elongata_contig98312:1121..1208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98312 1122..1208 +
1691679809.9973922-CDS-H-elongata_contig98312:1121..12081691679809.9973922-CDS-H-elongata_contig98312:1121..1208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98312 1122..1208 +
1622931374.129504-CDS-H-elongata_contig98312:1606..17361622931374.129504-CDS-H-elongata_contig98312:1606..1736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98312 1607..1736 +
1691679810.0178244-CDS-H-elongata_contig98312:1606..17361691679810.0178244-CDS-H-elongata_contig98312:1606..1736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98312 1607..1736 +
1622931374.1427665-CDS-H-elongata_contig98312:1952..19781622931374.1427665-CDS-H-elongata_contig98312:1952..1978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98312 1953..1978 +
1691679810.03469-CDS-H-elongata_contig98312:1952..19781691679810.03469-CDS-H-elongata_contig98312:1952..1978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98312 1953..1978 +
1622931374.154256-CDS-H-elongata_contig98312:2182..23111622931374.154256-CDS-H-elongata_contig98312:2182..2311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98312 2183..2311 +
1691679810.0453463-CDS-H-elongata_contig98312:2182..23111691679810.0453463-CDS-H-elongata_contig98312:2182..2311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98312 2183..2311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig98312.17181.1

>prot_H-elongata_contig98312.17181.1 ID=prot_H-elongata_contig98312.17181.1|Name=mRNA_H-elongata_contig98312.17181.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp
QRALEIKRLKQKNQELARARESNARMQGKNATNHERAVAERKIKLKNDLQ
STKANLEKERKTNAKSSREQRQALQMTYQEIRAQNAMENRQRRSMIRKQR
EDARLKREARQREREAQQQGEQLRTVLHGKTTQDAERMIEKMEKDEDALI
ERLKKIQEDQRRAYQLLQESLES*
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mRNA from alignment at H-elongata_contig98312:596..2311+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig98312.17181.1 ID=mRNA_H-elongata_contig98312.17181.1|Name=mRNA_H-elongata_contig98312.17181.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1716bp|location=Sequence derived from alignment at H-elongata_contig98312:596..2311+ (Himanthalia elongata Himel1 dioecious)
CAGCGCGCTTTGGAGATCAAGCGACTGAAGCAGAAGAATCAAGAGTTGGC
GCGAGCAAGGGAGAGCAACGCCCGAATGCAGGGAAAGAACGCAACCAATC
ACGAGCGCGCGGTAGCCGAGCGGAAAATCAAGTTGAAGAACGACTTACAA
GTGAGTTGTAGTGTGACCCAAAGCTGGTAAAGCACTCGCGTGTGGCCCAT
ATTACTGGGGTTGCGCGCACCTCCTATTTGACGATTTTAATTTATTGAGG
AGAGAGGAGCAAGGCAAAACAATTTGTCGGACACCAAACTGATGATATGG
TGTATTCCTCTCAACCTGACAACACCAATCCTTTTAACGGTTCCAGCTAG
CTAAGCCTAGACCGGAAAACTTACTCACCGTTTGCCTATAGTCGCCGTAA
ACCTCCTCCCGAGATACGTATTTCCCCAGCTCTTGTTAGCGAAAAACACC
CGACGCGGGGTTAGCTGTTGCGACAATGTTGCTGTTCTATATCTGACCTT
CAGCTTATGATGCCTCTCTCACGAAGTCGACGAAGGCTAACCTAGAGAAA
GAGCGAAAGACGAATGCGAAGTCTTCCAGGGAGCAGCGACAAGCACTGCA
GATGACTTATCAGGTGGGTCCTCCACATCGCAATTGGGCAGCGATGCCCG
TTACGGTAATGTCTAGAGAACCGATATATTTTCAATGCAAGACTTTTCGT
CGCCATTGTGGGAGCGTCGCGCTGGTTGAATGGCATCCAGTCGGGAAATA
GCTAGGAGGAGAGAGGAGGCACATGCATACATCCTTCTTCTGTAGAAATC
TCACCTGGAGGAACCATCCAAGCTGAGGAGAAATGACCTTACGAACCACG
AGCGAGCGCTCAATTATTTTACCACCGCATTTTTCAGCGAAGATGCAATC
TAACATTCTTTGTAATCTACCATTTTATCTTTCGGTGTAAGATATGAAAC
CGTTTCTGCCTTCGTCTTGTGGTGAACCTTTCTTTTCGATATTCGGGCAC
GGAACGATCAGGAAATACGAGCCCAAAACGCGATGGAGAACAGGCAGCGA
AGATCGATGATCCGAAAACAGCGCGAGGACGCGCGTTTGAAGAGGGAGGC
CAGGCAACGGGAGAGGGAAGCCCAGCAGCAGGGAGAGCAGCGTCGGAAAA
TCGAGACCGAGAAGAAGAAGGCGAGGGGGGCCCTCTGAGACACACCGCCG
CTGATGATTCGAAATCGTGAACAAACTACATCACCGCATGTGTTCCGCTC
TATAACACGCCTCTAAGACGAACTACATCGCCGCTATGACGGAGGGAGGG
AGGAAGCCGATATAGCGTTAACAATCCTCTTTCCCCTCACACCACGCAGC
GTCAAAGTTCGTACGGTGCTGCATGGGAAGACTGTATCAATGCCGCTTTA
ATGTCGCAATGCTTGGCGATTCCGAACACGCCAACCAATATCCCCAAAAC
ATCCGGATGAACACAGGGAATCCCTCGTCTGTTGTTACCAACCCTCTGCC
TGTGAAAGATTACGTATGCTCTACGGCTACAACTTGTGTATGTTCCTGTT
TCCAAGCTATTGGCCCCGTCGTACATGTTATCAATAGACGCAGGATGCGG
AACGAATGATCGAGAAGATGGAAAAGGACGAAGACGCGCTGATCGAGCGG
CTCAAAAAAATACAAGAGGATCAGCGCCGCGCGTATCAGTTGCTCCAAGA
GTCCCTGGAAAGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig98312:596..2311+

>mRNA_H-elongata_contig98312.17181.1 ID=mRNA_H-elongata_contig98312.17181.1|Name=mRNA_H-elongata_contig98312.17181.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig98312:596..2311+ (Himanthalia elongata Himel1 dioecious)
CAGCGCGCTTTGGAGATCAAGCGACTGAAGCAGAAGAATCAAGAGTTGGC
GCGAGCAAGGGAGAGCAACGCCCGAATGCAGGGAAAGAACGCAACCAATC
ACGAGCGCGCGGTAGCCGAGCGGAAAATCAAGTTGAAGAACGACTTACAA
CAGCGCGCTTTGGAGATCAAGCGACTGAAGCAGAAGAATCAAGAGTTGGC
GCGAGCAAGGGAGAGCAACGCCCGAATGCAGGGAAAGAACGCAACCAATC
ACGAGCGCGCGGTAGCCGAGCGGAAAATCAAGTTGAAGAACGACTTACAA
TCGACGAAGGCTAACCTAGAGAAAGAGCGAAAGACGAATGCGAAGTCTTC
CAGGGAGCAGCGACAAGCACTGCAGATGACTTATCAGTCGACGAAGGCTA
ACCTAGAGAAAGAGCGAAAGACGAATGCGAAGTCTTCCAGGGAGCAGCGA
CAAGCACTGCAGATGACTTATCAGGAAATACGAGCCCAAAACGCGATGGA
GAACAGGCAGCGAAGATCGATGATCCGAAAACAGCGCGAGGACGCGCGTT
TGAAGAGGGAGGCCAGGCAACGGGAGAGGGAAGCCCAGCAGCAGGGAGAG
CAGCGAAATACGAGCCCAAAACGCGATGGAGAACAGGCAGCGAAGATCGA
TGATCCGAAAACAGCGCGAGGACGCGCGTTTGAAGAGGGAGGCCAGGCAA
CGGGAGAGGGAAGCCCAGCAGCAGGGAGAGCAGCTTCGTACGGTGCTGCA
TGGGAAGACTTTCGTACGGTGCTGCATGGGAAGACTACGCAGGATGCGGA
ACGAATGATCGAGAAGATGGAAAAGGACGAAGACGCGCTGATCGAGCGGC
TCAAAAAAATACAAGAGGATCAGCGCCGCGCGTATCAGTTGCTCCAAGAG
TCCCTGGAAAGTTGAACGCAGGATGCGGAACGAATGATCGAGAAGATGGA
AAAGGACGAAGACGCGCTGATCGAGCGGCTCAAAAAAATACAAGAGGATC
AGCGCCGCGCGTATCAGTTGCTCCAAGAGTCCCTGGAAAGTTGA
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