mRNA_H-elongata_contig97973.17148.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig97973.17148.1
Unique NamemRNA_H-elongata_contig97973.17148.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig97973.17148.1 vs. uniprot
Match: D7G695_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G695_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.330e-30
Identity = 61/96 (63.54%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    1 VVDTEEVIPGGVMVTPRPLIPKANQLEEKRARLARWQEDPSLIANDMAVQREAVSRAEEKDAMVEAEQEAWERWYFSLRAHLIARRRPTVSWSRTA 288
            V+  EEV PG V  TPRP +PKANQLE KRAR+ARW++DPS +  DMA QREA+ +AEE+D  +EAE++AWERWY  LRAHL A RRPT +WS  A
Sbjct:  120 VLQPEEVAPGAVQATPRPPMPKANQLEPKRARMARWKKDPSEMEKDMAKQREALKKAEEEDEQLEAERDAWERWYLVLRAHLTAGRRPTATWSPAA 215
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BLAST of mRNA_H-elongata_contig97973.17148.1 vs. uniprot
Match: A0A6H5KJ15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ15_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 3.390e-30
Identity = 61/96 (63.54%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:    1 VVDTEEVIPGGVMVTPRPLIPKANQLEEKRARLARWQEDPSLIANDMAVQREAVSRAEEKDAMVEAEQEAWERWYFSLRAHLIARRRPTVSWSRTA 288
            V+  EEV PG V  TPRP +PKANQLE KRAR+ARW++DPS I  DMA QREA+ +AE++D  +EAE+ AWERWY  LRAHL A RRPT +WS  A
Sbjct:  103 VLQPEEVAPGAVQATPRPPMPKANQLEPKRARMARWKKDPSEIEKDMAKQREALKKAEKEDEQLEAERHAWERWYLVLRAHLTAGRRPTATWSPAA 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97973.17148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G695_ECTSI1.330e-3063.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJ15_9PHAE3.390e-3063.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97973contigH-elongata_contig97973:233..1121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size290
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931370.7720032-CDS-H-elongata_contig97973:232..4211622931370.7720032-CDS-H-elongata_contig97973:232..421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97973 233..421 +
1691679808.7453175-CDS-H-elongata_contig97973:232..4211691679808.7453175-CDS-H-elongata_contig97973:232..421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97973 233..421 +
1622931370.784057-CDS-H-elongata_contig97973:1022..11211622931370.784057-CDS-H-elongata_contig97973:1022..1121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97973 1023..1121 +
1691679808.7559388-CDS-H-elongata_contig97973:1022..11211691679808.7559388-CDS-H-elongata_contig97973:1022..1121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97973 1023..1121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97973.17148.1prot_H-elongata_contig97973.17148.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig97973 233..1121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig97973.17148.1

>prot_H-elongata_contig97973.17148.1 ID=prot_H-elongata_contig97973.17148.1|Name=mRNA_H-elongata_contig97973.17148.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
VVDTEEVIPGGVMVTPRPLIPKANQLEEKRARLARWQEDPSLIANDMAVQ
REAVSRAEEKDAMVEAEQEAWERWYFSLRAHLIARRRPTVSWSRTA
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mRNA from alignment at H-elongata_contig97973:233..1121+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig97973.17148.1 ID=mRNA_H-elongata_contig97973.17148.1|Name=mRNA_H-elongata_contig97973.17148.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=889bp|location=Sequence derived from alignment at H-elongata_contig97973:233..1121+ (Himanthalia elongata Himel1 dioecious)
GTGGTGGACACAGAGGAAGTTATTCCTGGGGGGGTTATGGTAACCCCCCG
TCCCCTCATCCCCAAGGCCAACCAGCTGGAGGAGAAGCGGGCGAGGTTGG
CGCGGTGGCAAGAGGACCCGTCGTTGATAGCAAATGACATGGCCGTGCAA
AGGGAGGCGGTGTCCAGAGCGGAAGAGAAAGACGCGATGGTGTGTGCATG
CGTCATCCGCGCCCGACGCATATAACCACGCTGTGACGGCCAGCAGCAGC
ATAACATATTGTAGTATAACCTATATACATTTATTCATTTTAACTTGAGG
GCATGCTTTTAGAACTTATATTTCCGTCGCATATATTGGGGAGTTGTGTA
CCTCAGTCTGACTCTTGTTGAGGGTGGAGTAGATGAGAGCAGGGCAGGGC
AGGGGCGGGCGGAAATTATGTGTCCTTGGTGGCCGCGGCAGCAACGGCGA
CAGTGACGTCATAAAAAATACGGACCTCGTAGGTTCGATCCAAGGACGTT
GACCCAAACATTCTACCGACATCCCCACTGCTTCTCCCTTCCCCACCATC
CACCATCCACCACCCACCATCCACTGTGTGTATAATACCTCCAATATCAT
ATCATAATATCATACAGTATACAATATAGGGTAAAATACTATAATACAGT
ATAATTCAAGTTTTTTTGTTTTTTTTAAAGAATAATATACAAGACAGTTA
GTATTAAGGATTCGTCCTCCCGTTTATCCACATTTTTACAAAAAACATCC
TCAACGATCGCCCGCGGTCCCTTCCCTCCCCTTTGAAAAGGTGGAAGCCG
AACAGGAAGCGTGGGAGCGGTGGTACTTCTCCCTCCGGGCGCACCTCATA
GCGAGGCGCCGTCCGACGGTATCCTGGTCGCGCACCGCG
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Coding sequence (CDS) from alignment at H-elongata_contig97973:233..1121+

>mRNA_H-elongata_contig97973.17148.1 ID=mRNA_H-elongata_contig97973.17148.1|Name=mRNA_H-elongata_contig97973.17148.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig97973:233..1121+ (Himanthalia elongata Himel1 dioecious)
GTGGTGGACACAGAGGAAGTTATTCCTGGGGGGGTTATGGTAACCCCCCG
TCCCCTCATCCCCAAGGCCAACCAGCTGGAGGAGAAGCGGGCGAGGTTGG
CGCGGTGGCAAGAGGACCCGTCGTTGATAGCAAATGACATGGCCGTGCAA
AGGGAGGCGGTGTCCAGAGCGGAAGAGAAAGACGCGATGGTGGTGGACAC
AGAGGAAGTTATTCCTGGGGGGGTTATGGTAACCCCCCGTCCCCTCATCC
CCAAGGCCAACCAGCTGGAGGAGAAGCGGGCGAGGTTGGCGCGGTGGCAA
GAGGACCCGTCGTTGATAGCAAATGACATGGCCGTGCAAAGGGAGGCGGT
GTCCAGAGCGGAAGAGAAAGACGCGATGGTGGAAGCCGAACAGGAAGCGT
GGGAGCGGTGGTACTTCTCCCTCCGGGCGCACCTCATAGCGAGGCGCCGT
CCGACGGTATCCTGGTCGCGCACCGCGGTGGAAGCCGAACAGGAAGCGTG
GGAGCGGTGGTACTTCTCCCTCCGGGCGCACCTCATAGCGAGGCGCCGTC
CGACGGTATCCTGGTCGCGCACCGCG
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