mRNA_H-elongata_contig97957.17145.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig97957.17145.1
Unique NamemRNA_H-elongata_contig97957.17145.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig97957.17145.1 vs. uniprot
Match: D8LJB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB6_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 7.730e-20
Identity = 70/149 (46.98%), Postives = 86/149 (57.72%), Query Frame = 1 
Query:    1 VRRDLERNGKGD-ASEGEWAEVQLELIRQERAVVADAHEMRARRARLEKTRRHIKGLERRAESVSPSIPGQNLPRRTFGE---TSPLPIVKMGDPEV----SSRFAV---ERRWST-LAEDVILRDADGGVRLMPLRKLPRKRGGSVEG 411
            VR DLE+ GK D  S+GEWAEVQLELIRQERAVVA A+EMRARRARL+  RR I  LE+ A    P  PG +   R   +     P P+ +  +         R  V   E  W+    E+ ++RDA+ GVRLMPL  LP KR    +G
Sbjct:  395 VRGDLEKEGKNDDTSDGEWAEVQLELIRQERAVVARANEMRARRARLDTLRRDIIDLEKHARLTRPLPPGNSREHRQHQDKFLVPPQPVPQEAESVALMPSGCRAGVGDEEPSWAAEFVEEEVIRDAETGVRLMPL--LPTKRDREQDG 541
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97957.17145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJB6_ECTSI7.730e-2046.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97957contigH-elongata_contig97957:1483..2115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931370.5903745-CDS-H-elongata_contig97957:1482..18091622931370.5903745-CDS-H-elongata_contig97957:1482..1809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97957 1483..1809 -
1691679808.644363-CDS-H-elongata_contig97957:1482..18091691679808.644363-CDS-H-elongata_contig97957:1482..1809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97957 1483..1809 -
1622931370.604086-CDS-H-elongata_contig97957:2031..21151622931370.604086-CDS-H-elongata_contig97957:2031..2115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97957 2032..2115 -
1691679808.6665308-CDS-H-elongata_contig97957:2031..21151691679808.6665308-CDS-H-elongata_contig97957:2031..2115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97957 2032..2115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97957.17145.1prot_H-elongata_contig97957.17145.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig97957 1483..2115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig97957.17145.1

>prot_H-elongata_contig97957.17145.1 ID=prot_H-elongata_contig97957.17145.1|Name=mRNA_H-elongata_contig97957.17145.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
VRRDLERNGKGDASEGEWAEVQLELIRQERAVVADAHEMRARRARLEKTR
RHIKGLERRAESVSPSIPGQNLPRRTFGETSPLPIVKMGDPEVSSRFAVE
RRWSTLAEDVILRDADGGVRLMPLRKLPRKRGGSVEG
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mRNA from alignment at H-elongata_contig97957:1483..2115-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig97957.17145.1 ID=mRNA_H-elongata_contig97957.17145.1|Name=mRNA_H-elongata_contig97957.17145.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=633bp|location=Sequence derived from alignment at H-elongata_contig97957:1483..2115- (Himanthalia elongata Himel1 dioecious)
GTGAGAAGGGACCTGGAGCGAAACGGGAAGGGCGACGCCTCCGAAGGGGA
GTGGGCCGAGGTGCAGCTGGAGCTGATCCGGCAGGTGAGAGAAGTGAGGT
CGGGTGTTCCCCACGAGTCGCGCACTCTTCCCCTTCTCTTTCTTTTGCGT
GATGTTTTCGAGATTCGATGTTAATCGATGCTCTCGCGGTCGCAGGACAG
GGGGGGCTCTCGATCGCATTAACCCGCCGTCTTCCTTAAGACACTGCGCA
AAAATCGCTTTTGATATATCCCCCGACTCTTCAAATCGTTGGCTCGTGTG
TTTCAGGAGAGGGCTGTTGTCGCTGACGCGCATGAGATGCGAGCACGCCG
TGCAAGGCTCGAAAAAACTCGACGCCACATCAAAGGCCTCGAGAGACGTG
CGGAATCCGTTTCCCCCTCTATCCCCGGGCAAAACCTTCCCCGGCGAACT
TTCGGAGAAACTTCTCCGCTGCCGATCGTGAAAATGGGAGATCCGGAAGT
GAGCAGTCGGTTTGCGGTCGAACGACGATGGTCTACCTTGGCTGAGGACG
TCATTCTTCGAGACGCAGATGGGGGAGTTCGTCTGATGCCGTTGAGGAAG
TTGCCGCGAAAGCGTGGCGGGTCGGTAGAGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig97957:1483..2115-

>mRNA_H-elongata_contig97957.17145.1 ID=mRNA_H-elongata_contig97957.17145.1|Name=mRNA_H-elongata_contig97957.17145.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig97957:1483..2115- (Himanthalia elongata Himel1 dioecious)
GTGAGAAGGGACCTGGAGCGAAACGGGAAGGGCGACGCCTCCGAAGGGGA
GTGGGCCGAGGTGCAGCTGGAGCTGATCCGGCAGGTGAGAAGGGACCTGG
AGCGAAACGGGAAGGGCGACGCCTCCGAAGGGGAGTGGGCCGAGGTGCAG
CTGGAGCTGATCCGGCAGGAGAGGGCTGTTGTCGCTGACGCGCATGAGAT
GCGAGCACGCCGTGCAAGGCTCGAAAAAACTCGACGCCACATCAAAGGCC
TCGAGAGACGTGCGGAATCCGTTTCCCCCTCTATCCCCGGGCAAAACCTT
CCCCGGCGAACTTTCGGAGAAACTTCTCCGCTGCCGATCGTGAAAATGGG
AGATCCGGAAGTGAGCAGTCGGTTTGCGGTCGAACGACGATGGTCTACCT
TGGCTGAGGACGTCATTCTTCGAGACGCAGATGGGGGAGTTCGTCTGATG
CCGTTGAGGAAGTTGCCGCGAAAGCGTGGCGGGTCGGTAGAGGGGGAGAG
GGCTGTTGTCGCTGACGCGCATGAGATGCGAGCACGCCGTGCAAGGCTCG
AAAAAACTCGACGCCACATCAAAGGCCTCGAGAGACGTGCGGAATCCGTT
TCCCCCTCTATCCCCGGGCAAAACCTTCCCCGGCGAACTTTCGGAGAAAC
TTCTCCGCTGCCGATCGTGAAAATGGGAGATCCGGAAGTGAGCAGTCGGT
TTGCGGTCGAACGACGATGGTCTACCTTGGCTGAGGACGTCATTCTTCGA
GACGCAGATGGGGGAGTTCGTCTGATGCCGTTGAGGAAGTTGCCGCGAAA
GCGTGGCGGGTCGGTAGAGGGG
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