mRNA_H-elongata_contig97936.17142.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig97936.17142.1
Unique NamemRNA_H-elongata_contig97936.17142.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig97936.17142.1 vs. uniprot
Match: D7FQP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP3_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.990e-25
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:  145 MLQQWLRDRCVPVVATLVTEDADLACRKNNVSFEQLVSAFSRMDGLKVPFRSSSQQ 312
            MLQ+WLRDRCVPVVATLVTEDAD+ACRKN +SFEQLVSAF+RMDGLKVPFRSSSQQ
Sbjct:    1 MLQEWLRDRCVPVVATLVTEDADIACRKNGLSFEQLVSAFARMDGLKVPFRSSSQQ 56
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BLAST of mRNA_H-elongata_contig97936.17142.1 vs. uniprot
Match: A0A6H5JPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY7_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 4.720e-25
Identity = 51/56 (91.07%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:  145 MLQQWLRDRCVPVVATLVTEDADLACRKNNVSFEQLVSAFSRMDGLKVPFRSSSQQ 312
            MLQ+WLRDRCVPVVATLVTEDAD+ACRKN++SFEQLVSAF+RMDGLKVPFRSSSQQ
Sbjct:    1 MLQEWLRDRCVPVVATLVTEDADIACRKNSLSFEQLVSAFARMDGLKVPFRSSSQQ 56
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97936.17142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQP3_ECTSI1.990e-2591.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPY7_9PHAE4.720e-2591.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97936contigH-elongata_contig97936:792..1466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue3e-21
Seed eggNOG ortholog2880.D7FQP3
Preferred nameTRAPPC8
KEGG koko:K05750,ko:K11268,ko:K20305
KEGG Pathwayko04810,map04810
GOsGO:0000003,GO:0000045,GO:0000407,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006914,GO:0006996,GO:0007030,GO:0007033,GO:0007049,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0016237,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0022414,GO:0022607,GO:0030008,GO:0030242,GO:0031267,GO:0031410,GO:0031982,GO:0032258,GO:0032991,GO:0033036,GO:0033365,GO:0034497,GO:0034613,GO:0034727,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0045184,GO:0046907,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051321,GO:0051641,GO:0051649,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0070925,GO:0071255,GO:0071702,GO:0071705,GO:0071840,GO:0072665,GO:0097708,GO:0098772,GO:0099023,GO:1905037,GO:1990072
EggNOG free text desc.autophagy of peroxisome
EggNOG OGsKOG1938@1,KOG1938@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size313
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931370.253771-CDS-H-elongata_contig97936:791..8461622931370.253771-CDS-H-elongata_contig97936:791..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97936 792..846 -
1691679808.504945-CDS-H-elongata_contig97936:791..8461691679808.504945-CDS-H-elongata_contig97936:791..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97936 792..846 -
1622931370.29179-CDS-H-elongata_contig97936:1209..14661622931370.29179-CDS-H-elongata_contig97936:1209..1466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97936 1210..1466 -
1691679808.517213-CDS-H-elongata_contig97936:1209..14661691679808.517213-CDS-H-elongata_contig97936:1209..1466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97936 1210..1466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97936.17142.1prot_H-elongata_contig97936.17142.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig97936 792..1466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig97936.17142.1

>prot_H-elongata_contig97936.17142.1 ID=prot_H-elongata_contig97936.17142.1|Name=mRNA_H-elongata_contig97936.17142.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
DSRAGLIVHEETTSPAINRHQDTTTPNYDKKWKGARGRSAAAASNTTGML
QQWLRDRCVPVVATLVTEDADLACRKNNVSFEQLVSAFSRMDGLKVPFRS
SSQQ
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mRNA from alignment at H-elongata_contig97936:792..1466-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig97936.17142.1 ID=mRNA_H-elongata_contig97936.17142.1|Name=mRNA_H-elongata_contig97936.17142.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=675bp|location=Sequence derived from alignment at H-elongata_contig97936:792..1466- (Himanthalia elongata Himel1 dioecious)
GATTCACGGGCTGGACTCATCGTTCACGAGGAAACAACTAGTCCAGCGAT
AAACCGGCATCAAGACACAACAACGCCAAATTACGACAAGAAGTGGAAGG
GGGCGAGGGGGCGCTCTGCCGCTGCGGCATCAAATACAACAGGGATGCTT
CAGCAATGGCTTCGCGATCGATGCGTTCCCGTCGTGGCGACCCTCGTGAC
GGAAGATGCCGACCTCGCGTGTCGGAAGAACAACGTCAGCTTCGAGCAGC
TGGTCAGGTGTGCTTGTGTTGAGTGTCGGGGGTTTTTCCAGGAAACGAAA
CAATGTTTTGCCTTCGCCGGCCGCGTGATGCCCGATCACCAACCACTTCC
GCGATCTTTTGTGGCGAGCTGTTTCTAGCTCTTGCTCTAGCTCTTGCGAT
CGCGTGCTGTTATAGCGCGCCACACGACGCCTCTTACCGCTCGCTTGTGG
CGACACGCCTCCTCCCAAAAACGAACGTCTCCCATTTCTTGCAAAGTGTG
CTGCTGTGTATCGATATTTGAGGCTGTTTTCATGCCACTCGGCTCGCCTC
GCGCGCGCGCGAATTTGATGTGTTTGGGTGGTTATGTTGTTGGTTCGCTG
CCGGCACTATCCTCTGACAGCGCCTTCTCCCGAATGGACGGGCTCAAAGT
GCCCTTCCGGTCCTCTAGCCAGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig97936:792..1466-

>mRNA_H-elongata_contig97936.17142.1 ID=mRNA_H-elongata_contig97936.17142.1|Name=mRNA_H-elongata_contig97936.17142.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig97936:792..1466- (Himanthalia elongata Himel1 dioecious)
GATTCACGGGCTGGACTCATCGTTCACGAGGAAACAACTAGTCCAGCGAT
AAACCGGCATCAAGACACAACAACGCCAAATTACGACAAGAAGTGGAAGG
GGGCGAGGGGGCGCTCTGCCGCTGCGGCATCAAATACAACAGGGATGCTT
CAGCAATGGCTTCGCGATCGATGCGTTCCCGTCGTGGCGACCCTCGTGAC
GGAAGATGCCGACCTCGCGTGTCGGAAGAACAACGTCAGCTTCGAGCAGC
TGGTCAGGATTCACGGGCTGGACTCATCGTTCACGAGGAAACAACTAGTC
CAGCGATAAACCGGCATCAAGACACAACAACGCCAAATTACGACAAGAAG
TGGAAGGGGGCGAGGGGGCGCTCTGCCGCTGCGGCATCAAATACAACAGG
GATGCTTCAGCAATGGCTTCGCGATCGATGCGTTCCCGTCGTGGCGACCC
TCGTGACGGAAGATGCCGACCTCGCGTGTCGGAAGAACAACGTCAGCTTC
GAGCAGCTGGTCAGCGCCTTCTCCCGAATGGACGGGCTCAAAGTGCCCTT
CCGGTCCTCTAGCCAGCAGCGCCTTCTCCCGAATGGACGGGCTCAAAGTG
CCCTTCCGGTCCTCTAGCCAGCAG
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