mRNA_H-elongata_contig9793.17140.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9793.17140.1
Unique NamemRNA_H-elongata_contig9793.17140.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 3.410e-20
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:   13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL +     AP  V + RSD GGEF EGEF  +C +  IKQEFT A
Sbjct:   36 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 130
[Close]
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5L158_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L158_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.400e-19
Identity = 51/95 (53.68%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:   13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLV----DTAPRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL     D AP  V + RSD+GGEF EGEF  +C +  IKQEFT A
Sbjct:  217 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRADGAPSDVMVVRSDDGGEFFEGEFGRVCRKYCIKQEFTPA 311
[Close]
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.040e-19
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:   13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL +     AP  V + RSD GGEF EGEF  +C +  IKQEFT A
Sbjct:   67 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 161
[Close]
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5L3E0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.060e-19
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:   13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL +     AP  V + RSD GGEF EGEF  +C +  IKQEFT A
Sbjct:  571 RVFVDLSGKVRVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 665
[Close]
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.100e-19
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:   13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL +     AP  V + RSD GGEF EGEF  +C +  IKQEFT A
Sbjct: 1003 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 1097
[Close]
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.150e-19
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:   13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL +     AP  V + RSD GGEF EGEF  +C +  IKQEFT A
Sbjct:  735 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 829
[Close]
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.160e-19
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:   13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL +     AP  V + RSD GGEF EGEF  +C +  IKQEFT A
Sbjct:  570 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 664
[Close]
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.160e-19
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:   13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL +     AP  V + RSD GGEF EGEF  +C +  IKQEFT A
Sbjct:  583 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 677
[Close]
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.170e-19
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:   13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL +     AP  V + RSD GGEF EGEF  +C +  IKQEFT A
Sbjct:  726 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 820
[Close]
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5JYF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF9_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.120e-18
Identity = 49/95 (51.58%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:   13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLV----DTAPRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL     D AP  V + RSD GGEF EGE   +C +  IK+EFT A
Sbjct:  170 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRADGAPSDVIVVRSDNGGEFFEGEIGKVCRKYCIKEEFTAA 264
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7U9_9PHAE3.410e-2052.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L158_9PHAE1.400e-1953.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGN1_9PHAE5.040e-1952.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L3E0_9PHAE5.060e-1952.63Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K583_9PHAE5.100e-1952.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JTI6_9PHAE5.150e-1952.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE5.160e-1952.63Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE5.160e-1952.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE5.170e-1952.63Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JYF9_9PHAE1.120e-1851.58Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9793contigH-elongata_contig9793:3515..3796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931370.0856721-CDS-H-elongata_contig9793:3514..37961622931370.0856721-CDS-H-elongata_contig9793:3514..3796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9793 3515..3796 +
1691679808.4620342-CDS-H-elongata_contig9793:3514..37961691679808.4620342-CDS-H-elongata_contig9793:3514..3796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9793 3515..3796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9793.17140.1prot_H-elongata_contig9793.17140.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9793 3515..3796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9793.17140.1

>prot_H-elongata_contig9793.17140.1 ID=prot_H-elongata_contig9793.17140.1|Name=mRNA_H-elongata_contig9793.17140.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
SFGGRVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKY
FMKYLVDTAPRKVEIARSDEGGEFEGEFSALCARGKIKQEFTTA
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mRNA from alignment at H-elongata_contig9793:3515..3796+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9793.17140.1 ID=mRNA_H-elongata_contig9793.17140.1|Name=mRNA_H-elongata_contig9793.17140.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=282bp|location=Sequence derived from alignment at H-elongata_contig9793:3515..3796+ (Himanthalia elongata Himel1 dioecious)
AGCTTCGGGGGAAGAGTGCTGGTAGATTTTTCGGGGAAAACACCTGTACA
GTTCCCAGGGGGAAATATGTACAAATTGATTGTCAGGGATGATTATTCGA
GACGTACGAAGGTCTATTTTCTCCACGGTAAGGATGAAACTGCCAAGTAT
TTCATGAAGTACTTGGTAGACACAGCGCCTCGCAAAGTAGAGATAGCGAG
GAGCGATGAGGGTGGGGAGTTTGAGGGCGAGTTTAGTGCCCTGTGTGCTC
GAGGAAAGATTAAGCAGGAGTTTACGACTGCC
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Coding sequence (CDS) from alignment at H-elongata_contig9793:3515..3796+

>mRNA_H-elongata_contig9793.17140.1 ID=mRNA_H-elongata_contig9793.17140.1|Name=mRNA_H-elongata_contig9793.17140.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig9793:3515..3796+ (Himanthalia elongata Himel1 dioecious)
AGCTTCGGGGGAAGAGTGCTGGTAGATTTTTCGGGGAAAACACCTGTACA
GTTCCCAGGGGGAAATATGTACAAATTGATTGTCAGGGATGATTATTCGA
GACGTACGAAGGTCTATTTTCTCCACGGTAAGGATGAAACTGCCAAGTAT
TTCATGAAGTACTTGGTAGACACAGCGCCTCGCAAAGTAGAGATAGCGAG
GAGCGATGAGGGTGGGGAGTTTGAGGGCGAGTTTAGTGCCCTGTGTGCTC
GAGGAAAGATTAAGCAGGAGTTTACGACTGCCAGCTTCGGGGGAAGAGTG
CTGGTAGATTTTTCGGGGAAAACACCTGTACAGTTCCCAGGGGGAAATAT
GTACAAATTGATTGTCAGGGATGATTATTCGAGACGTACGAAGGTCTATT
TTCTCCACGGTAAGGATGAAACTGCCAAGTATTTCATGAAGTACTTGGTA
GACACAGCGCCTCGCAAAGTAGAGATAGCGAGGAGCGATGAGGGTGGGGA
GTTTGAGGGCGAGTTTAGTGCCCTGTGTGCTCGAGGAAAGATTAAGCAGG
AGTTTACGACTGCC
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