mRNA_H-elongata_contig9659.17042.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9659.17042.1
Unique NamemRNA_H-elongata_contig9659.17042.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig9659.17042.1 vs. uniprot
Match: A0A6H5JEV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV9_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.420e-24
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:   16 DHGGGDAMFVVAPYSREFGWSSSWTRPRPNRPVLGRLIALAKASAELIVEWLSREGMGMSGRNPASWKSAFR 231
            D GGG AM+VVAPY+R+ GW SSWT PRP RPVLGRL+ALAKASAE +V WLS  G G  G+ P  WK AFR
Sbjct: 1084 DPGGGSAMYVVAPYARDLGWESSWTSPRPERPVLGRLVALAKASAESLVGWLS--GEGALGKGPGGWKDAFR 1153
[Close]
BLAST of mRNA_H-elongata_contig9659.17042.1 vs. uniprot
Match: D7FGX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX0_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 9.210e-24
Identity = 48/73 (65.75%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:   13 KDHGGGDAMFVVAPYSREFGWSSSWTRPRPNRPVLGRLIALAKASAELIVEWLSREGMGMSGRNPASWKSAFR 231
            +D  GG AM+VVAPY+R+ GW SSWT PRP RPVLGRL+ALAKASAE +V WLS  G G  G  P  WK AFR
Sbjct: 1018 RDAAGGSAMYVVAPYARDLGWESSWTSPRPERPVLGRLVALAKASAESLVGWLS--GEGTLGNGPGGWKDAFR 1088
[Close]
BLAST of mRNA_H-elongata_contig9659.17042.1 vs. uniprot
Match: A0A662XTA8_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XTA8_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.720e-6
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:   34 AMFVVAPYSREFGWSSSWTRPRPNRPVLGRLIALAKASAELIVEWLSREGMGMSGRNPASWKSAF 228
            AMF+   Y  E    SSWTR +P + V+ RL++LA+AS +L+V WL       SG + + WK+AF
Sbjct:  939 AMFIATDYE-EADCLSSWTRFKPEKVVVQRLVSLAQASYDLLVHWLD------SGTSASGWKAAF 996
[Close]
BLAST of mRNA_H-elongata_contig9659.17042.1 vs. uniprot
Match: A0A024FYK8_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FYK8_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.780e-5
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:   34 AMFVVAPYSREFGWSSSWTRPRPNRPVLGRLIALAKASAELIVEWLSREGMGMSGRNPASWKSAFR 231
            A+++ + Y  +    SSWTR RP R VL RL+++A  S E+++ W SR G  ++G     WK AFR
Sbjct:  926 ALYIASDYE-DMDCLSSWTRIRPERVVLQRLVSMAAQSYEIMLRWFSR-GCSLTG-----WKQAFR 984
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9659.17042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JEV9_9PHAE1.420e-2468.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGX0_ECTSI9.210e-2465.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A662XTA8_9STRA2.720e-643.08Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A024FYK8_9STRA1.780e-540.91Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9659contigH-elongata_contig9659:608..841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue4.3e-20
Seed eggNOG ortholog2880.D7FGX0
Preferred nameNOL6
KEGG koko:K08018,ko:K14544
KEGG Pathwayko03008,ko04010,ko04015,ko04530,map03008,map04010,map04015,map04530
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000462,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030628,GO:0030684,GO:0030686,GO:0031503,GO:0031974,GO:0031981,GO:0032040,GO:0032545,GO:0032991,GO:0033036,GO:0034456,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0036002,GO:0042254,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0089701,GO:0090304,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.tRNA export from nucleus
EggNOG OGsKOG2054@1,KOG2054@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931358.870937-CDS-H-elongata_contig9659:607..8411622931358.870937-CDS-H-elongata_contig9659:607..841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9659 608..841 +
1691679804.32893-CDS-H-elongata_contig9659:607..8411691679804.32893-CDS-H-elongata_contig9659:607..841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9659 608..841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9659.17042.1prot_H-elongata_contig9659.17042.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9659 608..841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9659.17042.1

>prot_H-elongata_contig9659.17042.1 ID=prot_H-elongata_contig9659.17042.1|Name=mRNA_H-elongata_contig9659.17042.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
AFNQKDHGGGDAMFVVAPYSREFGWSSSWTRPRPNRPVLGRLIALAKASA
ELIVEWLSREGMGMSGRNPASWKSAFR*
back to top

mRNA from alignment at H-elongata_contig9659:608..841+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9659.17042.1 ID=mRNA_H-elongata_contig9659.17042.1|Name=mRNA_H-elongata_contig9659.17042.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig9659:608..841+ (Himanthalia elongata Himel1 dioecious)
GCTTTCAACCAAAAAGATCACGGCGGAGGAGATGCCATGTTCGTCGTAGC
TCCCTACTCCCGCGAGTTTGGATGGTCATCGTCCTGGACACGACCTCGCC
CCAACAGGCCCGTGCTCGGGAGACTCATTGCTCTCGCAAAAGCTTCCGCG
GAGTTGATTGTGGAGTGGCTTTCTCGAGAGGGGATGGGGATGTCTGGGAG
AAACCCCGCCAGTTGGAAGAGTGCTTTCAGGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig9659:608..841+

>mRNA_H-elongata_contig9659.17042.1 ID=mRNA_H-elongata_contig9659.17042.1|Name=mRNA_H-elongata_contig9659.17042.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig9659:608..841+ (Himanthalia elongata Himel1 dioecious)
GCTTTCAACCAAAAAGATCACGGCGGAGGAGATGCCATGTTCGTCGTAGC
TCCCTACTCCCGCGAGTTTGGATGGTCATCGTCCTGGACACGACCTCGCC
CCAACAGGCCCGTGCTCGGGAGACTCATTGCTCTCGCAAAAGCTTCCGCG
GAGTTGATTGTGGAGTGGCTTTCTCGAGAGGGGATGGGGATGTCTGGGAG
AAACCCCGCCAGTTGGAAGAGTGCTTTCAGGTGAGCTTTCAACCAAAAAG
ATCACGGCGGAGGAGATGCCATGTTCGTCGTAGCTCCCTACTCCCGCGAG
TTTGGATGGTCATCGTCCTGGACACGACCTCGCCCCAACAGGCCCGTGCT
CGGGAGACTCATTGCTCTCGCAAAAGCTTCCGCGGAGTTGATTGTGGAGT
GGCTTTCTCGAGAGGGGATGGGGATGTCTGGGAGAAACCCCGCCAGTTGG
AAGAGTGCTTTCAGGTGA
back to top