mRNA_H-elongata_contig95939.16990.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95939.16990.1
Unique NamemRNA_H-elongata_contig95939.16990.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: D8LDG1_ECTSI (Dihydrodipicolinate reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG1_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 9.790e-53
Identity = 80/121 (66.12%), Postives = 103/121 (85.12%), Query Frame = 1
Query:    4 EDLEWKGLWVMMNGISGKMGVEVAAACLRRGFKIAPYAICGAGGQEVSVNDLEGGKPTLVTLVASSDVKGCETALEDVRRRCEGGRLIAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDR 366
            E++ ++G+WVMMNG+SGKMG++VAAACLR+GF+IAPYA+ G+G  EVSV D +GG PT VTLV S D +GC+ A+ +++RRC GG ++ VDYT PSAVNANAEFY+K+ LNFVMGTTGGDR
Sbjct:   44 EEMAFEGVWVMMNGLSGKMGLDVAAACLRKGFRIAPYAMSGSGSGEVSVADPKGGDPTTVTLVPSDDAEGCDKAVAELKRRCSGGSVVVVDYTTPSAVNANAEFYAKHGLNFVMGTTGGDR 164          
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: A0A7S3XN34_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN34_HETAK)

HSP 1 Score: 119 bits (299), Expect = 1.270e-30
Identity = 63/118 (53.39%), Postives = 80/118 (67.80%), Query Frame = 1
Query:   37 MNGISGKMGVEVAAACLRRGFKIAPYAICGAGGQE--VSVNDLEGGKPTLVTLVAS-SDVK---GCETALEDVRRRCEGGRLIAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDRCV 372
            MNG+ G MG EVA AC+RRGFKIAPYA  G    E  + ++DLEGG+   V L+   +D K    C+  ++ ++  C G  LIA+DYTHP+AVN NA FY+K+ LNFVMGTTGGDR  
Sbjct:    1 MNGLPGAMGREVAGACIRRGFKIAPYAFTGPDVTEALIDIDDLEGGEKIGVKLIRGPTDEKKEYACDGIIDGLKAAC-GDYLIAIDYTHPTAVNCNANFYAKHQLNFVMGTTGGDRAA 117          
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: A0A835ZG43_9STRA (Dihydrodipicolinate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG43_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.040e-27
Identity = 59/113 (52.21%), Postives = 80/113 (70.80%), Query Frame = 1
Query:   34 MMNGISGKMGVEVAAACLRRGFKIAPYAICGAGGQ--EVSVNDLEGGKPTLVTLVASSDVKGCETALEDVRRRCEGGRLIAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDR 366
            MMNG+ G MG EVAAACLR+GFK+APY++ G   Q  EV+V+D+ GG+   V L+     +G +  + +++ R  G  LI +DYTHP+AVN+NAE Y++  L FVMGTTGGDR
Sbjct:    1 MMNGLPGNMGKEVAAACLRKGFKMAPYSLTGPQIQDTEVTVDDMSGGESFTVGLLKDG-AEGTDEKILEMKARF-GSDLICIDYTHPTAVNSNAELYARLGLPFVMGTTGGDR 111          
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: A0A7S3C098_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C098_9EUKA)

HSP 1 Score: 106 bits (264), Expect = 2.600e-25
Identity = 55/114 (48.25%), Postives = 75/114 (65.79%), Query Frame = 1
Query:   31 VMMNGISGKMGVEVAAACLRRGFKIAPYAICGAG--GQEVSVNDLEGGKPTLVTLVASSDVKGCETALEDVRRRCEGGRLIAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDR 366
            +M+NG+ G MG E+AAACLRRG ++AP+ + G      EV+V+D  GG PT V L  SS+ +     +         G ++ +D+THPSAVNANAE+Y+ + L FVMGTTGGDR
Sbjct:   13 LMINGLPGAMGKEIAAACLRRGIELAPFGMTGDAITDTEVTVDDGHGGTPTTVALFRSSEREALAAKVSSSYPT--PGAVVCIDFTHPSAVNANAEWYAAHKLPFVMGTTGGDR 124          
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: A0A7S4IU05_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IU05_9EUKA)

HSP 1 Score: 106 bits (265), Expect = 3.250e-25
Identity = 56/116 (48.28%), Postives = 79/116 (68.10%), Query Frame = 1
Query:   25 LWVMMNGISGKMGVEVAAACLRRGFKIAPYAICG--AGGQEVSVNDLEGGKPTLVTLVASSDVKGCETALEDVRRRCEGGRLIAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDR 366
            L +M+NG+ G MGVE+AAACLRRG ++AP+A+ G     +E++V+D  GG   +V L  +SD +    A +        G L+ +D+THP+AVNANAE+Y ++ L FVMGTTGGDR
Sbjct:   45 LALMVNGLPGAMGVEIAAACLRRGVELAPFALTGDIIDQEEITVDDGRGGPQHVVRLYRASDREALAAAAKAAYPM--PGSLVCIDFTHPTAVNANAEWYVQHALPFVMGTTGGDR 158          
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: W7U2L4_9STRA (Dihydrodipicolinate reductase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2L4_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.020e-24
Identity = 58/120 (48.33%), Postives = 76/120 (63.33%), Query Frame = 1
Query:   31 VMMNGISGKMGVEVAAACLRRGFKIAPYAICGAGGQE--VSVNDLEGGKPTLVTLV----ASSDVKGCETALEDVRR--RCEGGRLIAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDR 366
            VM+NG+ G MG EVAAACLRRG ++    + G    E  V V+D EGGKP  + LV      +  + C+  L+ +    R  G RLIAVDYTHP+AVN N   Y+++ ++FVMGTTGGDR
Sbjct:   46 VMVNGLPGAMGKEVAAACLRRGLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRESGTRLIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDR 165          
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: A0A7S1BBW7_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBW7_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.070e-24
Identity = 55/116 (47.41%), Postives = 73/116 (62.93%), Query Frame = 1
Query:   25 LWVMMNGISGKMGVEVAAACLRRGFKIAPYAICGAGGQEVSVN--DLEGGKPTLVTLVASSDVKGCETALEDVRRRCEGGRLIAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDR 366
            L VM+NG+ G M    A ACLR+G  +AP  + G   +   +N  D E GK   V L+ SS  +  ++AL  ++    GG L+A+DYTHPSAVN NA++Y +N L FVMGTTGGDR
Sbjct:   63 LRVMINGMPGPMATAAAEACLRKGLTLAPIGLTGPDIEPSVINVVDNESGKSASVRLIPSSSEEEKDSALIGLKIGAGGGNLVAIDYTHPSAVNGNAKWYVENKLPFVMGTTGGDR 178          
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: W7TV95_9STRA (Dihydrodipicolinate reductase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TV95_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.250e-24
Identity = 58/120 (48.33%), Postives = 76/120 (63.33%), Query Frame = 1
Query:   31 VMMNGISGKMGVEVAAACLRRGFKIAPYAICGAGGQE--VSVNDLEGGKPTLVTLV----ASSDVKGCETALEDVRR--RCEGGRLIAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDR 366
            VM+NG+ G MG EVAAACLRRG ++    + G    E  V V+D EGGKP  + LV      +  + C+  L+ +    R  G RLIAVDYTHP+AVN N   Y+++ ++FVMGTTGGDR
Sbjct:   46 VMVNGLPGAMGKEVAAACLRRGLEVCSVGLTGPQVDEECVDVDDGEGGKPQTIRLVKGPVTGAGDEECDARLQGLVAGYRESGTRLIAVDYTHPTAVNPNGMLYARHKMDFVMGTTGGDR 165          
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: A0A7S3DTU3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DTU3_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.600e-24
Identity = 55/122 (45.08%), Postives = 76/122 (62.30%), Query Frame = 1
Query:   13 EWKGLWVMMNGISGKMGVEVAAACLRRGFKIAPYAICGAGGQE--VSVNDLEGGKPTLVTLVASSDVKGCETALEDVRRRCEG--GRLIAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDR 366
            + +G++VM+NG+ G M    A ACLR+G K++P+A+ G   ++  ++V D + G    V LV SS        L  VR   +     L+A+DYTHPSAVN NA+FY  ND+ FVMGTTGGDR
Sbjct:   50 DMEGVYVMVNGMPGPMATAAAEACLRKGLKLSPFALTGPDMEQATITVVDDKTGSSANVLLVPSSTPDEITAQLAGVREAMQDKDAALLAIDYTHPSAVNGNAKFYVANDIPFVMGTTGGDR 171          
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Match: A0A7R9UBK1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBK1_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.760e-24
Identity = 59/121 (48.76%), Postives = 75/121 (61.98%), Query Frame = 1
Query:   31 VMMNGISGKMGVEVAAACLRRGFKIAPYAICGAGGQEVSVN------DLEGGKPTLVTLVAS--SDVKGCETALEDVRRRCEGGRL-IAVDYTHPSAVNANAEFYSKNDLNFVMGTTGGDR 366
            VMMNG+ G MG EV AACLR+GF++AP A  G    +VSV       +L+G   T V LV    +D+  C  A+   R + +   L IA+DYTHPSAVN NA  Y+  +L FV+GTTGGDR
Sbjct:   53 VMMNGLPGAMGREVGAACLRKGFRLAPTAFTGP---DVSVERVEVGPELDGAHTTSVKLVKGPPNDLDACREAVAAARAQLQADELLIAIDYTHPSAVNHNAALYADLELPFVVGTTGGDR 170          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95939.16990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDG1_ECTSI9.790e-5366.12Dihydrodipicolinate reductase n=1 Tax=Ectocarpus s... [more]
A0A7S3XN34_HETAK1.270e-3053.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZG43_9STRA1.040e-2752.21Dihydrodipicolinate reductase n=1 Tax=Tribonema mi... [more]
A0A7S3C098_9EUKA2.600e-2548.25Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S4IU05_9EUKA3.250e-2548.28Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
W7U2L4_9STRA1.020e-2448.33Dihydrodipicolinate reductase n=1 Tax=Nannochlorop... [more]
A0A7S1BBW7_9STRA2.070e-2447.41Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
W7TV95_9STRA3.250e-2448.33Dihydrodipicolinate reductase n=2 Tax=Monodopsidac... [more]
A0A7S3DTU3_9STRA3.600e-2445.08Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7R9UBK1_9STRA3.760e-2448.76Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95939contigH-elongata_contig95939:1341..2388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.5
Seed ortholog evalue9.8e-43
Seed eggNOG ortholog2880.D8LDG1
KEGG rclassRC00478
KEGG koko:K00215
KEGG ReactionR04198,R04199
KEGG Pathwayko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00525,M00526,M00527
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.4-hydroxy-tetrahydrodipicolinate reductase
EggNOG OGs28HEW@1,2QPSY@2759
EC1.17.1.8
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiondihydrodipicolinate reductase
Ec32 orthologEc-15_000750.1
Exons2
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931353.2679508-CDS-H-elongata_contig95939:1340..15021622931353.2679508-CDS-H-elongata_contig95939:1340..1502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95939 1341..1502 +
1691679802.106793-CDS-H-elongata_contig95939:1340..15021691679802.106793-CDS-H-elongata_contig95939:1340..1502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95939 1341..1502 +
1622931353.2909153-CDS-H-elongata_contig95939:2175..23881622931353.2909153-CDS-H-elongata_contig95939:2175..2388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95939 2176..2388 +
1691679802.1217604-CDS-H-elongata_contig95939:2175..23881691679802.1217604-CDS-H-elongata_contig95939:2175..2388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95939 2176..2388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95939.16990.1prot_H-elongata_contig95939.16990.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95939 1341..2388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95939.16990.1

>prot_H-elongata_contig95939.16990.1 ID=prot_H-elongata_contig95939.16990.1|Name=mRNA_H-elongata_contig95939.16990.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
EEDLEWKGLWVMMNGISGKMGVEVAAACLRRGFKIAPYAICGAGGQEVSV
NDLEGGKPTLVTLVASSDVKGCETALEDVRRRCEGGRLIAVDYTHPSAVN
ANAEFYSKNDLNFVMGTTGGDRCV*
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mRNA from alignment at H-elongata_contig95939:1341..2388+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95939.16990.1 ID=mRNA_H-elongata_contig95939.16990.1|Name=mRNA_H-elongata_contig95939.16990.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1048bp|location=Sequence derived from alignment at H-elongata_contig95939:1341..2388+ (Himanthalia elongata Himel1 dioecious)
GAGGAAGATCTGGAATGGAAGGGATTATGGGTAATGATGAACGGGATCTC GGGGAAGATGGGAGTTGAGGTGGCGGCGGCGTGTTTACGTCGGGGGTTTA AAATCGCGCCGTACGCCATCTGCGGCGCCGGCGGACAGGAGGTTAGCGTC AACGACCTCGAGGTAAAACGTTGTTTTTTTATTTTTTTTAAACTTGAACT CATCCCAACCCTCTGAACATCCCACACCTTCTTAGCGCCGTCAGAGGTAC CATCCAGGGGACCAACTATCGTCAGGTTCGAATGTGTACATTACTACCTT TGAGCACAAAATCGTCACACGTGAGTATATATATTTGTAAAGGATATAGG TCAGTAAAGCACATGGTTGCATTATGCATATATATATCGATTAATTTCGG ACTATATTACGGCTCGTGAAAAGTTGTGTTCCGCAATAATGAGTTCATCG GGTAAACGGAATAGTGTCAGGGCTCACATTATATCCTGTACTTAACCATC GAGAGTGGGCTATAGAGAGACGGGGGGGAGGTGGATAACGTGCCTCTATT TTTGAGTTGTTAGTGCTGCTCTCCGTCATTTCTTCAAAACATTAGCCTTC CTTTCCCCCTAGAAGCACGTGCTGACTAGAGTACAAAATATCCAAGCTTG CGTCTCAACCCGGATCGTAACGCATGCTCCTTTTAAAATAAATTGACGCC CCCACCTCAAAATTTTTCGTATTCAGTTAGTGACACACTCTCGCATACTT GCTCAATCCTCCATCACCAACGCCTTTCGGATTGAAACCCAGCCCCCCTC TCCCGCCCCCCCCCCAAACCTTAAAAAATGAACAGGGAGGAAAACCGACC CTGGTTACCCTGGTGGCTAGCAGCGACGTGAAGGGGTGCGAAACGGCGTT GGAGGACGTGCGTCGGCGCTGCGAGGGCGGTCGACTTATCGCGGTGGACT ACACCCACCCCTCCGCCGTAAACGCCAATGCGGAGTTCTACTCCAAGAAC GACCTTAACTTCGTCATGGGGACCACAGGGGGAGACAGGTGTGTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig95939:1341..2388+

>mRNA_H-elongata_contig95939.16990.1 ID=mRNA_H-elongata_contig95939.16990.1|Name=mRNA_H-elongata_contig95939.16990.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig95939:1341..2388+ (Himanthalia elongata Himel1 dioecious)
GAGGAAGATCTGGAATGGAAGGGATTATGGGTAATGATGAACGGGATCTC
GGGGAAGATGGGAGTTGAGGTGGCGGCGGCGTGTTTACGTCGGGGGTTTA
AAATCGCGCCGTACGCCATCTGCGGCGCCGGCGGACAGGAGGTTAGCGTC
AACGACCTCGAGGAGGAAGATCTGGAATGGAAGGGATTATGGGTAATGAT
GAACGGGATCTCGGGGAAGATGGGAGTTGAGGTGGCGGCGGCGTGTTTAC
GTCGGGGGTTTAAAATCGCGCCGTACGCCATCTGCGGCGCCGGCGGACAG
GAGGTTAGCGTCAACGACCTCGAGGGAGGAAAACCGACCCTGGTTACCCT
GGTGGCTAGCAGCGACGTGAAGGGGTGCGAAACGGCGTTGGAGGACGTGC
GTCGGCGCTGCGAGGGCGGTCGACTTATCGCGGTGGACTACACCCACCCC
TCCGCCGTAAACGCCAATGCGGAGTTCTACTCCAAGAACGACCTTAACTT
CGTCATGGGGACCACAGGGGGAGACAGGTGTGTGTAGGGAGGAAAACCGA
CCCTGGTTACCCTGGTGGCTAGCAGCGACGTGAAGGGGTGCGAAACGGCG
TTGGAGGACGTGCGTCGGCGCTGCGAGGGCGGTCGACTTATCGCGGTGGA
CTACACCCACCCCTCCGCCGTAAACGCCAATGCGGAGTTCTACTCCAAGA
ACGACCTTAACTTCGTCATGGGGACCACAGGGGGAGACAGGTGTGTGTAG
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