mRNA_H-elongata_contig95798.16979.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95798.16979.1
Unique NamemRNA_H-elongata_contig95798.16979.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig95798.16979.1 vs. uniprot
Match: UPI001652E070 (uncharacterized protein LOC110926009 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI001652E070)

HSP 1 Score: 67.8 bits (164), Expect = 3.230e-9
Identity = 62/241 (25.73%), Postives = 110/241 (45.64%), Query Frame = 1
Query:  154 WFEITFFLKVIERLFQLVRLADGTKPQVAQLFYRLHNVLDDLKEAFRTDPDLAGIKK-RLELLEDALDK---CREYIHFPVYGAAFCLAPEYYPKEDAAMIDDGQPLTD-LRTMVERMLINHGSDSRAAILTARDEDKGGPVGKVMIQYARYKSGNFPGAIFLEQAKSLTGAEWWNNLGKAGLPELAQVAGRVLSMVPAAAGYERNWSLMGSVSEGKHARMSSNTMSNLVYVRANLQLMYR 861
            W  +TF LKV+  + +++RL D  K       Y      + ++ A  T     G      +++   +DK   C+  +H P++ A +   PE+Y       I+  Q +TD +   V+R++ +              +DK   + K M+++   + G F   I      ++  A+WWN  GK  +P + Q+A +VLS+  +++G ERNWS    +   K  R+    + +LV+V  N  L  R
Sbjct:  121 WTNVTFTLKVMGPIVRVLRLVDNEKKPAMDYLY------EGMERAKITIAKALGENSVDYQVVSAIIDKRWDCQ--LHHPLHAAGYYFNPEFYYYRPE--IEKDQEVTDGMIKCVQRLVPS--------------KDKQDLIMKEMVKWVN-QEGRFALDIAKRAHCTIAPAQWWNLYGKE-VPNIQQLAMKVLSLTCSSSGCERNWSTFEQIHSKKRNRLEHKKLQDLVFVNYNKTLKNR 335          
BLAST of mRNA_H-elongata_contig95798.16979.1 vs. uniprot
Match: UPI0010A55CE9 (uncharacterized protein LOC114752370 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A55CE9)

HSP 1 Score: 63.5 bits (153), Expect = 1.390e-7
Identity = 57/243 (23.46%), Postives = 108/243 (44.44%), Query Frame = 1
Query:  154 WFEITFFLKVIERLFQLVRLADGT-KPQVAQLFYRLHNVLDDLKEAFRTDPDLAGIKKRLELLEDALDKCREYIHFPVYGAAFCLAPEYYPKEDAAMIDDGQPLTDLRTMVERMLINHGSDSRAAILTARDEDKGGPVGKVMIQYARYKSGNFPGAIFLEQAKSLTGAEWWNNLGKAGLPELAQVAGRVLSMVPAAAGYERNWSLMGSVSEGKHARMSSNTMSNLVYVRANLQLMYREYMKSK 879
            W E    +K++  L +L+R+ D   KP +  ++  +    + +KE F+ + +L   K    +++   DK   ++   ++ AA+ L P +    +   I   +   DL  + E       S+      T   +          +   R +  +F      + A+ L   +WW+  G + +PEL QVA R+LS   +++G ERNWSL   +   +  R+    +++LV+   NL+L  R  +  K
Sbjct:  468 WNECYQVVKIVSPLMRLLRIVDSDEKPSLPYVYEGMQRAKNGIKEIFQRNKEL--YKPYTNIIQARWDK---HLKQELHAAAYMLNPAFL--YNPTFIKKNRLQKDLIDVFESF-----SNENLDFCTMMQQ----------VFIYRDRKDSFDRFSCEKAAQKLDPHQWWSFYGSS-IPELQQVAIRILSQTSSSSGCERNWSLFERIHNKRRNRLEHERLNDLVFTNYNLRLKDRNLLNKK 687          
BLAST of mRNA_H-elongata_contig95798.16979.1 vs. uniprot
Match: UPI0010A37B05 (uncharacterized protein LOC114731662 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A37B05)

HSP 1 Score: 61.6 bits (148), Expect = 6.080e-7
Identity = 68/290 (23.45%), Postives = 125/290 (43.10%), Query Frame = 1
Query:   13 KQALVNTVVDETFTEYVTRKLTKKALRATGDEVKRSILDTDKSEDGAWFEITFFLKVIERLFQLVRLADGT-KPQVAQLFYRLHNVLDDLKEAFRTDPDLAGIKKRLELLEDALDKCREYIHFPVYGAAFCLAPEYYPKEDAAMIDDGQPLTDLRTMVERMLINHGSDSRAAILTARDEDKGGPVGKVMIQYARYKSGNFPGAIFLEQAKSLTGAEWWNNLGKAGLPELAQVAGRVLSMVPAAAGYERNWSLMGSVSEGKHARMSSNTMSNLVYVRANLQLMYREYMKSK 879
            K  L   V+D+ F ++      K A    G     ++LD     +  W E    +K++  L +L+R+ D   KP +  +F  +    + +K+ F  + +L   K    +++   D+   ++   ++ AA+ L P +    + ++I   +    L  + E       S+      T   +        V I   R  S  F      + A+ L   +WW+  G + +PEL QVA R+LS    ++G ERNWSL   +   +  R+    +++LV+   NL+L  R+ +  K
Sbjct:  491 KHDLQALVIDKHFVDH------KLARTEAGRTFSATVLD-----NRFWNECYQVVKIVSPLMRLLRIVDSDEKPSLPYVFEGMQRAKNGIKDIFHRNKEL--YKPYTRIIQARWDR---HLKQELHAAAYMLNPAFL--YNPSLIKKNRLQKHLIDVFESF-----SNENLDYCTMMQQ--------VFIYKDRKDS--FDRFSCEKAAQKLDPHQWWSFYGSS-IPELQQVAIRILSQTSTSSGCERNWSLFERIHTKRRNRLEHERLNDLVFTNYNLRLKDRDILNKK 746          
BLAST of mRNA_H-elongata_contig95798.16979.1 vs. uniprot
Match: UPI0010A49E47 (uncharacterized protein LOC114750523 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A49E47)

HSP 1 Score: 60.1 bits (144), Expect = 1.270e-6
Identity = 58/243 (23.87%), Postives = 108/243 (44.44%), Query Frame = 1
Query:  154 WFEITFFLKVIERLFQLVRLADGT-KPQVAQLFYRLHNVLDDLKEAFRTDPDLAGIKKRLELLEDALDKCREYIHFPVYGAAFCLAPEYYPKEDAAMIDDGQPLTDLRTMVERMLINHGSDSRAAILTARDEDKGGPVGKVMIQYARYKSGNFPGAIFLEQAKSLTGAEWWNNLGKAGLPELAQVAGRVLSMVPAAAGYERNWSLMGSVSEGKHARMSSNTMSNLVYVRANLQLMYREYMKSK 879
            W E    +K++  L +L+R+ D   KP +  +F  +    + +K+ F  + +L   K    +++   D+   Y+   ++ AA+ L P +    + ++I   +    L  + E       S+      T   +        V I   R  S  F      + ++ L   +WW+  G + +PEL QVA R+LS    ++G ERNWSL   +   +  R+    +++LV+   NL+L  R+ +  K
Sbjct:   44 WNECYQVVKIVSPLMRLLRIVDSDEKPSLPYVFEGMQRAKNGIKDIFHRNKEL--YKPYTRIIQARWDR---YLKQKLHAAAYMLNPAFL--YNPSLIKKNRLQKHLIDVFESF-----SNENLDYCTMMQQ--------VFIYKDRKDS--FDRFSCEKASQKLDHHQWWSFYGSS-IPELQQVAIRILSQTSTSSGCERNWSLFERIHTKRRNRLEHERLNDLVFTNYNLRLKDRDILNKK 263          
BLAST of mRNA_H-elongata_contig95798.16979.1 vs. uniprot
Match: UPI00165300D7 (uncharacterized protein LOC110876300 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI00165300D7)

HSP 1 Score: 58.2 bits (139), Expect = 6.890e-6
Identity = 57/241 (23.65%), Postives = 108/241 (44.81%), Query Frame = 1
Query:  154 WFEITFFLKVIERLFQLVRLADGTK-PQVAQLFYRLHNVLDDLKEAFRTDPDLAGIKKRLELLEDALDK---CREYIHFPVYGAAFCLAPEYYPKEDAAMIDDGQPLTD-LRTMVERMLINHGSDSRAAILTARDEDKGGPVGKVMIQYARYKSGNFPGAIFLEQAKSLTGAEWWNNLGKAGLPELAQVAGRVLSMVPAAAGYERNWSLMGSVSEGKHARMSSNTMSNLVYVRANLQLMYR 861
            W  +TF LKV+  + +++ L D  K P++  L+  +      + +A      L       +++   +DK   C+  +H P++ A +   P++Y       I+  Q +TD +   V+R++ +              +DK   + K M++ A                 ++  A+WW+  GK  +P + Q+A +VLS+   ++G ERNWS    +   K  R+    + +LV+V+ N  L  R
Sbjct:  217 WTNVTFTLKVMGPIVRVLCLVDNEKKPEIGYLYEGMERAKITIAKA------LGENNVDYQVVSAIIDKRWDCQ--LHHPLHAAGYYFNPKFYCYRPE--IEKDQEVTDGMIKCVQRLVPS--------------KDKQDLIMKEMVKRAHC---------------TIAPAQWWSLYGKE-VPNIQQLAMKVLSLTCCSSGCERNWSTFEQIHSKKRNRLEYKKLQDLVFVKYNKTLKNR 417          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95798.16979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001652E0703.230e-925.73uncharacterized protein LOC110926009 n=1 Tax=Helia... [more]
UPI0010A55CE91.390e-723.46uncharacterized protein LOC114752370 n=1 Tax=Proso... [more]
UPI0010A37B056.080e-723.45uncharacterized protein LOC114731662 n=1 Tax=Proso... [more]
UPI0010A49E471.270e-623.87uncharacterized protein LOC114750523 n=1 Tax=Proso... [more]
UPI00165300D76.890e-623.65uncharacterized protein LOC110876300 n=1 Tax=Helia... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95798contigH-elongata_contig95798:1430..2311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score87.4
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog4432.XP_010267048.1
EggNOG free text desc.hAT family C-terminal dimerisation region
EggNOG OGs2C7QK@1,2SI2R@2759,37YPA@33090,3GNEB@35493
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size882
Cds size882
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931352.0922446-CDS-H-elongata_contig95798:1429..23111622931352.0922446-CDS-H-elongata_contig95798:1429..2311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95798 1430..2311 -
1691679801.589828-CDS-H-elongata_contig95798:1429..23111691679801.589828-CDS-H-elongata_contig95798:1429..2311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95798 1430..2311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95798.16979.1prot_H-elongata_contig95798.16979.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95798 1430..2311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95798.16979.1

>prot_H-elongata_contig95798.16979.1 ID=prot_H-elongata_contig95798.16979.1|Name=mRNA_H-elongata_contig95798.16979.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=294bp
VTKCKQALVNTVVDETFTEYVTRKLTKKALRATGDEVKRSILDTDKSEDG
AWFEITFFLKVIERLFQLVRLADGTKPQVAQLFYRLHNVLDDLKEAFRTD
PDLAGIKKRLELLEDALDKCREYIHFPVYGAAFCLAPEYYPKEDAAMIDD
GQPLTDLRTMVERMLINHGSDSRAAILTARDEDKGGPVGKVMIQYARYKS
GNFPGAIFLEQAKSLTGAEWWNNLGKAGLPELAQVAGRVLSMVPAAAGYE
RNWSLMGSVSEGKHARMSSNTMSNLVYVRANLQLMYREYMKSKN
back to top

mRNA from alignment at H-elongata_contig95798:1430..2311-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95798.16979.1 ID=mRNA_H-elongata_contig95798.16979.1|Name=mRNA_H-elongata_contig95798.16979.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=882bp|location=Sequence derived from alignment at H-elongata_contig95798:1430..2311- (Himanthalia elongata Himel1 dioecious)
GTAACAAAGTGCAAGCAGGCCCTCGTGAACACGGTGGTGGATGAGACGTT CACGGAGTACGTGACCAGAAAGTTAACTAAGAAGGCACTCCGCGCAACTG GAGACGAAGTCAAGAGGTCCATCTTGGATACCGACAAGAGTGAAGATGGT GCGTGGTTCGAGATCACTTTCTTCTTGAAGGTGATCGAGCGGCTCTTTCA GCTTGTTCGTCTCGCCGACGGCACCAAGCCCCAGGTGGCCCAGCTGTTCT ACAGACTGCACAACGTCCTTGACGACTTGAAGGAGGCTTTCCGGACCGAC CCCGACCTCGCAGGCATCAAAAAGCGGCTCGAGCTGCTGGAGGACGCCTT GGATAAGTGCCGGGAGTACATACACTTTCCGGTGTACGGGGCTGCTTTCT GTCTGGCTCCGGAGTACTACCCTAAAGAAGATGCAGCTATGATCGACGAC GGGCAGCCGCTCACGGACCTGCGAACGATGGTGGAGAGAATGCTGATTAA TCACGGCAGCGACTCACGTGCGGCCATCCTGACGGCGAGGGATGAAGACA AGGGCGGGCCGGTCGGAAAAGTCATGATTCAGTACGCGAGGTACAAGTCG GGTAATTTCCCGGGTGCCATATTCCTCGAGCAAGCCAAGTCTCTGACGGG GGCGGAGTGGTGGAACAACCTCGGCAAGGCGGGTTTGCCGGAGCTGGCGC AAGTGGCGGGCCGTGTTCTATCTATGGTGCCAGCTGCGGCCGGGTATGAA CGTAACTGGAGCCTGATGGGGTCGGTCTCGGAGGGGAAGCACGCGCGGAT GAGCTCAAACACCATGTCCAACCTGGTCTATGTGCGTGCCAACCTCCAGC TGATGTACCGTGAATACATGAAGAGCAAGAAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig95798:1430..2311-

>mRNA_H-elongata_contig95798.16979.1 ID=mRNA_H-elongata_contig95798.16979.1|Name=mRNA_H-elongata_contig95798.16979.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1764bp|location=Sequence derived from alignment at H-elongata_contig95798:1430..2311- (Himanthalia elongata Himel1 dioecious)
GTAACAAAGTGCAAGCAGGCCCTCGTGAACACGGTGGTGGATGAGACGTT
CACGGAGTACGTGACCAGAAAGTTAACTAAGAAGGCACTCCGCGCAACTG
GAGACGAAGTCAAGAGGTCCATCTTGGATACCGACAAGAGTGAAGATGGT
GCGTGGTTCGAGATCACTTTCTTCTTGAAGGTGATCGAGCGGCTCTTTCA
GCTTGTTCGTCTCGCCGACGGCACCAAGCCCCAGGTGGCCCAGCTGTTCT
ACAGACTGCACAACGTCCTTGACGACTTGAAGGAGGCTTTCCGGACCGAC
CCCGACCTCGCAGGCATCAAAAAGCGGCTCGAGCTGCTGGAGGACGCCTT
GGATAAGTGCCGGGAGTACATACACTTTCCGGTGTACGGGGCTGCTTTCT
GTCTGGCTCCGGAGTACTACCCTAAAGAAGATGCAGCTATGATCGACGAC
GGGCAGCCGCTCACGGACCTGCGAACGATGGTGGAGAGAATGCTGATTAA
TCACGGCAGCGACTCACGTGCGGCCATCCTGACGGCGAGGGATGAAGACA
AGGGCGGGCCGGTCGGAAAAGTCATGATTCAGTACGCGAGGTACAAGTCG
GGTAATTTCCCGGGTGCCATATTCCTCGAGCAAGCCAAGTCTCTGACGGG
GGCGGAGTGGTGGAACAACCTCGGCAAGGCGGGTTTGCCGGAGCTGGCGC
AAGTGGCGGGCCGTGTTCTATCTATGGTGCCAGCTGCGGCCGGGTATGAA
CGTAACTGGAGCCTGATGGGGTCGGTCTCGGAGGGGAAGCACGCGCGGAT
GAGCTCAAACACCATGTCCAACCTGGTCTATGTGCGTGCCAACCTCCAGC
TGATGTACCGTGAATACATGAAGAGCAAGAACGTAACAAAGTGCAAGCAG
GCCCTCGTGAACACGGTGGTGGATGAGACGTTCACGGAGTACGTGACCAG
AAAGTTAACTAAGAAGGCACTCCGCGCAACTGGAGACGAAGTCAAGAGGT
CCATCTTGGATACCGACAAGAGTGAAGATGGTGCGTGGTTCGAGATCACT
TTCTTCTTGAAGGTGATCGAGCGGCTCTTTCAGCTTGTTCGTCTCGCCGA
CGGCACCAAGCCCCAGGTGGCCCAGCTGTTCTACAGACTGCACAACGTCC
TTGACGACTTGAAGGAGGCTTTCCGGACCGACCCCGACCTCGCAGGCATC
AAAAAGCGGCTCGAGCTGCTGGAGGACGCCTTGGATAAGTGCCGGGAGTA
CATACACTTTCCGGTGTACGGGGCTGCTTTCTGTCTGGCTCCGGAGTACT
ACCCTAAAGAAGATGCAGCTATGATCGACGACGGGCAGCCGCTCACGGAC
CTGCGAACGATGGTGGAGAGAATGCTGATTAATCACGGCAGCGACTCACG
TGCGGCCATCCTGACGGCGAGGGATGAAGACAAGGGCGGGCCGGTCGGAA
AAGTCATGATTCAGTACGCGAGGTACAAGTCGGGTAATTTCCCGGGTGCC
ATATTCCTCGAGCAAGCCAAGTCTCTGACGGGGGCGGAGTGGTGGAACAA
CCTCGGCAAGGCGGGTTTGCCGGAGCTGGCGCAAGTGGCGGGCCGTGTTC
TATCTATGGTGCCAGCTGCGGCCGGGTATGAACGTAACTGGAGCCTGATG
GGGTCGGTCTCGGAGGGGAAGCACGCGCGGATGAGCTCAAACACCATGTC
CAACCTGGTCTATGTGCGTGCCAACCTCCAGCTGATGTACCGTGAATACA
TGAAGAGCAAGAAC
back to top