mRNA_H-elongata_contig95777.16975.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95777.16975.1
Unique NamemRNA_H-elongata_contig95777.16975.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig95777.16975.1 vs. uniprot
Match: A0A6H5JUT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT2_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.990e-13
Identity = 48/126 (38.10%), Postives = 75/126 (59.52%), Query Frame = 1 
Query:    1 LQETKWDGASEIAASGYRIYFIGNRSG-----GQHGVGLAIKKEIVNKAGKDVIAIQCISARLMKARISV-KSNFVTIVVAHAPTE--KATEG----KKIKYIAVLNSNVSSVPAQEYIFILTDAN 342
            LQET+ +G   IA  GY I + G R+G     G HGVG+AIK+ +    G++   ++CIS RLMKAR+ + ++  VT VV +APTE  + T G     K  +   L++ +  V +++++ +L DAN
Sbjct:   17 LQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKARLQIGRTCRVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVYSRDHLVVLMDAN 142
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BLAST of mRNA_H-elongata_contig95777.16975.1 vs. uniprot
Match: H3AI42_LATCH (Uncharacterized protein n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3AI42_LATCH)

HSP 1 Score: 50.1 bits (118), Expect = 7.360e-5
Identity = 33/109 (30.28%), Postives = 59/109 (54.13%), Query Frame = 1 
Query:   19 DGASEIAASGYRIYFIGNRSGGQHGVGLAIKKEIVNKAGKDVIAIQCISARLMKARISVKSN-FVTIVVAHAPTEKATEGKKIKYIAVLNSNVSSVPAQEYIFILTDAN 342
            +G  +    GY  ++ G +    HGVG AIK E++N+  +  I I   + RLM  R+++  N + TI+  +APT  A +  K ++ + L+  +S +P  + + +L D N
Sbjct:   10 EGQLKEQGGGYTFFWKGKQL---HGVGFAIKNELINQLNEFPIGI---NERLMTLRLNLVGNRYATIISVYAPTLDADDEIKEEFYSNLDQVLSGIPEGDRLILLGDFN 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95777.16975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUT2_9PHAE2.990e-1338.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
H3AI42_LATCH7.360e-530.28Uncharacterized protein n=1 Tax=Latimeria chalumna... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95777contigH-elongata_contig95777:1936..2292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931351.6323156-CDS-H-elongata_contig95777:1935..21961622931351.6323156-CDS-H-elongata_contig95777:1935..2196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95777 1936..2196 -
1691679801.3784192-CDS-H-elongata_contig95777:1935..21961691679801.3784192-CDS-H-elongata_contig95777:1935..2196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95777 1936..2196 -
1622931351.6804547-CDS-H-elongata_contig95777:2211..22921622931351.6804547-CDS-H-elongata_contig95777:2211..2292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95777 2212..2292 -
1691679801.390312-CDS-H-elongata_contig95777:2211..22921691679801.390312-CDS-H-elongata_contig95777:2211..2292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95777 2212..2292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95777.16975.1prot_H-elongata_contig95777.16975.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95777 1936..2292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95777.16975.1

>prot_H-elongata_contig95777.16975.1 ID=prot_H-elongata_contig95777.16975.1|Name=mRNA_H-elongata_contig95777.16975.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
LQETKWDGASEIAASGYRIYFIGNRSGGQHGVGLAIKKEIVNKAGKDVIA
IQCISARLMKARISVKSNFVTIVVAHAPTEKATEGKKIKYIAVLNSNVSS
VPAQEYIFILTDAN
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mRNA from alignment at H-elongata_contig95777:1936..2292-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95777.16975.1 ID=mRNA_H-elongata_contig95777.16975.1|Name=mRNA_H-elongata_contig95777.16975.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at H-elongata_contig95777:1936..2292- (Himanthalia elongata Himel1 dioecious)
CTGCAGGAGACAAAATGGGATGGAGCATCTGAAATAGCTGCATCTGGATA
CCGGATCTATTTCATTGGTAACCGCAGCGGGGTCAGAGGAAAATAGGGGC
AACATGGAGTGGGACTAGCGATAAAGAAGGAGATCGTTAACAAGGCTGGC
AAGGACGTCATCGCAATCCAGTGCATCAGCGCACGTCTAATGAAGGCTAG
AATATCAGTTAAATCTAATTTCGTTACGATTGTGGTAGCCCACGCTCCGA
CCGAGAAAGCGACGGAGGGGAAGAAGATCAAGTACATCGCAGTCCTCAAC
AGCAACGTATCATCAGTACCCGCTCAAGAATACATCTTCATTTTGACAGA
CGCAAAT
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Coding sequence (CDS) from alignment at H-elongata_contig95777:1936..2292-

>mRNA_H-elongata_contig95777.16975.1 ID=mRNA_H-elongata_contig95777.16975.1|Name=mRNA_H-elongata_contig95777.16975.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig95777:1936..2292- (Himanthalia elongata Himel1 dioecious)
CTGCAGGAGACAAAATGGGATGGAGCATCTGAAATAGCTGCATCTGGATA
CCGGATCTATTTCATTGGTAACCGCAGCGGGCTGCAGGAGACAAAATGGG
ATGGAGCATCTGAAATAGCTGCATCTGGATACCGGATCTATTTCATTGGT
AACCGCAGCGGGGGGCAACATGGAGTGGGACTAGCGATAAAGAAGGAGAT
CGTTAACAAGGCTGGCAAGGACGTCATCGCAATCCAGTGCATCAGCGCAC
GTCTAATGAAGGCTAGAATATCAGTTAAATCTAATTTCGTTACGATTGTG
GTAGCCCACGCTCCGACCGAGAAAGCGACGGAGGGGAAGAAGATCAAGTA
CATCGCAGTCCTCAACAGCAACGTATCATCAGTACCCGCTCAAGAATACA
TCTTCATTTTGACAGACGCAAATGGGCAACATGGAGTGGGACTAGCGATA
AAGAAGGAGATCGTTAACAAGGCTGGCAAGGACGTCATCGCAATCCAGTG
CATCAGCGCACGTCTAATGAAGGCTAGAATATCAGTTAAATCTAATTTCG
TTACGATTGTGGTAGCCCACGCTCCGACCGAGAAAGCGACGGAGGGGAAG
AAGATCAAGTACATCGCAGTCCTCAACAGCAACGTATCATCAGTACCCGC
TCAAGAATACATCTTCATTTTGACAGACGCAAAT
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