mRNA_H-elongata_contig95711.16971.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95711.16971.1
Unique NamemRNA_H-elongata_contig95711.16971.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig95711.16971.1 vs. uniprot
Match: A0A6H5JZ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ72_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 1.680e-49
Identity = 120/270 (44.44%), Postives = 155/270 (57.41%), Query Frame = 1 
Query:    1 LEEAVLRMMQDYNRARKEVLYGLDAQGRPLEAHGNGEDKINGQVKVSANPRKPVPFSYLQALGKRD-LPPPSPNAVDIIPDVFSRPSEGFPEEDED--VSPDGGG-------VGGVPNHVLVMQERQKLGSSATMARGAFVFSLHGLCGDLTRKRTSCSGDWRLSDSTRAARFVLLGLWKAVRPPPGLLKYALKVTRGIVNFRRRQARRELQQPQGSVGGNG------------GVGVGDLSESMRRQERKEFWYM--VGRNHTFWCLKV 738
            LEEAV RMM+DY RARKEVLYGLD  GRPLE   +   +++   +  + PR+PV    LQ+L KR+ LP      + ++ +  S  + G P   ++  VS +  G       +GGVPNHVLVM+ERQKLGSSATMARGAF+FSL GLC  LT+KR S +G WR S S  AARF++ GLW A+RPPPGLL  AL  T G++  R         +P+GS    G            G   G +S + R    +E   +  V R+   WC KV
Sbjct:  162 LEEAVSRMMKDYQRARKEVLYGLDDLGRPLEEVASLGREVDRGGRSPSIPREPVSLEDLQSLSKREKLPRTGSINISVLKNGLSTTAGGVPASSKEAQVSDEIAGRRKERDPLGGVPNHVLVMKERQKLGSSATMARGAFLFSLSGLCSALTKKRVSRAGGWRPSQSAEAARFIISGLWTAIRPPPGLLG-ALSSTAGLLAPR-------CCRPRGSSSSRGHRRKVKLALKRLGARSGPVSPTSRTGGVREGGCLSAVTRSGYLWCFKV 423
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BLAST of mRNA_H-elongata_contig95711.16971.1 vs. uniprot
Match: D8LD61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD61_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 2.000e-49
Identity = 123/261 (47.13%), Postives = 155/261 (59.39%), Query Frame = 1 
Query:    1 LEEAVLRMMQDYNRARKEVLYGLDAQGRPLEAHGNGEDKINGQVKVSANPRKPVPFSYLQALGKR-DLPPPSPNAVDIIPDVFSRPSEGFP--EEDEDVSPDGGG-------VGGVPNHVLVMQERQKLGSSATMARGAFVFSLHGLCGDLTRKRTSCSGDWRLSDSTRAARFVLLGLWKAVRPPPGLLKYALKVTRGIVN---FRRRQARRELQQPQGSVGGNGGVGVGDLSESMRRQERKEFWYM--VGRNHTFWCLKV 738
            LEEAV RMM+DY RARKEVLYGLD  GRPLE   +   +++   +  + PR PV    LQ+L KR +LP      +  + +  S  + G P   ++ +VS   GG       +GGVPNHVLVM+ERQKLGS+ATMARGAF+FSL GLC  LT+KR + +G WR S S  AARFV  GLW A+RPPPGLL  AL  T G +    FRRR + R  ++   S     G G G  S + R    +E   +  V R+  FWC KV
Sbjct:  467 LEEAVSRMMKDYQRARKEVLYGLDDLGRPLEEVASSGREVDSGGRSPSLPRDPVSLEDLQSLSKRINLPRTGSINLSGLKNGLSTTAGGLPARSKEAEVSEGIGGRRREGDPLGGVPNHVLVMKERQKLGSAATMARGAFLFSLSGLCSALTKKRVNRTGGWRPSQSAEAARFVFSGLWTAIRPPPGLLG-ALSSTPGFLAARCFRRRDSSRGHRRKAKSALKRLGAGSGPGSPTPRPGGVREGGCLSAVTRSGYFWCFKV 726
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95711.16971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZ72_9PHAE1.680e-4944.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD61_ECTSI2.000e-4947.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95711contigH-elongata_contig95711:257..1808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size738
Cds size717
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95711.16971.1prot_H-elongata_contig95711.16971.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95711 257..1787 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931351.1657019-CDS-H-elongata_contig95711:256..5451622931351.1657019-CDS-H-elongata_contig95711:256..545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95711 257..545 -
1691679801.1965947-CDS-H-elongata_contig95711:256..5451691679801.1965947-CDS-H-elongata_contig95711:256..545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95711 257..545 -
1622931351.1998937-CDS-H-elongata_contig95711:906..12181622931351.1998937-CDS-H-elongata_contig95711:906..1218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95711 907..1218 -
1691679801.2062385-CDS-H-elongata_contig95711:906..12181691679801.2062385-CDS-H-elongata_contig95711:906..1218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95711 907..1218 -
1622931351.2232583-CDS-H-elongata_contig95711:1671..17871622931351.2232583-CDS-H-elongata_contig95711:1671..1787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95711 1672..1787 -
1691679801.218162-CDS-H-elongata_contig95711:1671..17871691679801.218162-CDS-H-elongata_contig95711:1671..1787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95711 1672..1787 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931351.2446232-UTR-H-elongata_contig95711:1787..18081622931351.2446232-UTR-H-elongata_contig95711:1787..1808Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95711 1788..1808 -
1691679801.2276852-UTR-H-elongata_contig95711:1787..18081691679801.2276852-UTR-H-elongata_contig95711:1787..1808Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95711 1788..1808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95711.16971.1

>prot_H-elongata_contig95711.16971.1 ID=prot_H-elongata_contig95711.16971.1|Name=mRNA_H-elongata_contig95711.16971.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=239bp
MMQDYNRARKEVLYGLDAQGRPLEAHGNGEDKINGQVKVSANPRKPVPFS
YLQALGKRDLPPPSPNAVDIIPDVFSRPSEGFPEEDEDVSPDGGGVGGVP
NHVLVMQERQKLGSSATMARGAFVFSLHGLCGDLTRKRTSCSGDWRLSDS
TRAARFVLLGLWKAVRPPPGLLKYALKVTRGIVNFRRRQARRELQQPQGS
VGGNGGVGVGDLSESMRRQERKEFWYMVGRNHTFWCLKV
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mRNA from alignment at H-elongata_contig95711:257..1808-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95711.16971.1 ID=mRNA_H-elongata_contig95711.16971.1|Name=mRNA_H-elongata_contig95711.16971.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1552bp|location=Sequence derived from alignment at H-elongata_contig95711:257..1808- (Himanthalia elongata Himel1 dioecious)
CTGGAAGAGGCGGTATTGAGGATGATGCAGGACTACAACCGGGCCAGGAA
GGAGGTGCTCTATGGGTTGGACGCCCAAGGTCGTCCGCTGGAGGCGCACG
GGAACGGAGAAGACAAAATCAACGGGCAAGTCAAAGTGTTCCCTTCGCTG
ATTACCCCTACTCCATCCCACCCCCCTCCGCCCCACACCCCCGCTTCCGG
CATCGCTTGAAATTTGGGGTCAAGTTTGGAAGGGTGCGTGGTAACCATCG
TGGCGACTCCAAATGCAGTAACGAACAGTTTCTAGGTCATTTTCGTGCCT
AGCTCCCCACTCGCCCCCTCTTCTTGCTTGCGGTGGTTTGACAACTCTGG
TGTCCAAAGAGGCGTTTTATTACTGTTGAGGACTGGAGTGTAGGTAGGTA
CTCGTGTATATTGGGAATCATTGAAGGGTCCTTGCCCAGACGCATGAGCC
GGTGACAAGAAATGGAATCGGCTTCACTGAAGAGTTTTTGGTCAACGAGG
GAATTTCTGAATTTTGCGAAAATTTCTGGCTTTGTCCTTGAGTCGCTCTC
AAACGCGCGGGGTTGCCATGCCGCGTCCTTGCGTTTTCAGGTCGGCCAAT
CCTCGCAAGCCGGTGCCATTCAGCTATCTCCAGGCGCTCGGCAAGCGCGA
TCTTCCGCCCCCATCCCCTAACGCCGTGGACATCATCCCGGATGTGTTCT
CCAGACCTTCCGAAGGCTTTCCCGAAGAGGATGAAGATGTCTCACCGGAC
GGCGGTGGGGTGGGCGGCGTCCCAAACCACGTCTTGGTGATGCAGGAGAG
GCAGAAGCTCGGCAGTTCCGCTACGATGGCGCGGGGGGCGTTCGTCTTCA
GCCTGCACGGCCTGTGCGGGGACCTGACGCGGAAGCGGACGAGCTGTTCG
GGGTGAGACATTCCAAACCGCGTCAGCGTTGGCCGGGTATAGAGCGAAGG
ACGGCGTAAGCGGGGATAGAGTGTATGGGGTATATATGGAAGGCAGCTTC
CGCCTCAATAGACAATGATCGCTGTTTTCAGGCCCCGCGAACGTCGTTTT
GCGTTCTTTGAAACTAGTTCAATTCGGAATGGACGAACTTTATCCTCGAT
GTCGCACAAAAGCTTCCCCTCCTTTGCAGAATACCCACCCGAAATACATC
TATATTAAGAAGTCTTAGGCTTGCAGTGTGGCGGTCAGCCACACCCCTTC
CCAACAGCTGTTTTACCTTCCTCTCCTACGGTATTGCATCACCTCCTGTG
TGCCCCGTAAAAGCGATTGGCGACTGTCGGACTCTACGCGGGCGGCTCGC
TTCGTCCTTTTGGGACTGTGGAAAGCGGTGCGCCCTCCCCCCGGGCTGCT
TAAGTACGCCCTCAAAGTCACCCGGGGCATCGTTAACTTTCGGCGACGGC
AAGCGCGGCGGGAGTTGCAGCAACCTCAAGGCAGTGTGGGTGGTAACGGC
GGCGTCGGTGTTGGCGATCTATCGGAGAGCATGCGAAGGCAAGAGAGAAA
GGAGTTCTGGTACATGGTCGGCAGGAACCACACGTTCTGGTGCTTGAAGG
TG
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Coding sequence (CDS) from alignment at H-elongata_contig95711:257..1808-

>mRNA_H-elongata_contig95711.16971.1 ID=mRNA_H-elongata_contig95711.16971.1|Name=mRNA_H-elongata_contig95711.16971.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1434bp|location=Sequence derived from alignment at H-elongata_contig95711:257..1808- (Himanthalia elongata Himel1 dioecious)
ATGATGCAGGACTACAACCGGGCCAGGAAGGAGGTGCTCTATGGGTTGGA
CGCCCAAGGTCGTCCGCTGGAGGCGCACGGGAACGGAGAAGACAAAATCA
ACGGGCAAGTCAAAGTATGATGCAGGACTACAACCGGGCCAGGAAGGAGG
TGCTCTATGGGTTGGACGCCCAAGGTCGTCCGCTGGAGGCGCACGGGAAC
GGAGAAGACAAAATCAACGGGCAAGTCAAAGTGTCGGCCAATCCTCGCAA
GCCGGTGCCATTCAGCTATCTCCAGGCGCTCGGCAAGCGCGATCTTCCGC
CCCCATCCCCTAACGCCGTGGACATCATCCCGGATGTGTTCTCCAGACCT
TCCGAAGGCTTTCCCGAAGAGGATGAAGATGTCTCACCGGACGGCGGTGG
GGTGGGCGGCGTCCCAAACCACGTCTTGGTGATGCAGGAGAGGCAGAAGC
TCGGCAGTTCCGCTACGATGGCGCGGGGGGCGTTCGTCTTCAGCCTGCAC
GGCCTGTGCGGGGACCTGACGCGGAAGCGGACGAGCTGTTCGGGGTCGGC
CAATCCTCGCAAGCCGGTGCCATTCAGCTATCTCCAGGCGCTCGGCAAGC
GCGATCTTCCGCCCCCATCCCCTAACGCCGTGGACATCATCCCGGATGTG
TTCTCCAGACCTTCCGAAGGCTTTCCCGAAGAGGATGAAGATGTCTCACC
GGACGGCGGTGGGGTGGGCGGCGTCCCAAACCACGTCTTGGTGATGCAGG
AGAGGCAGAAGCTCGGCAGTTCCGCTACGATGGCGCGGGGGGCGTTCGTC
TTCAGCCTGCACGGCCTGTGCGGGGACCTGACGCGGAAGCGGACGAGCTG
TTCGGGCGATTGGCGACTGTCGGACTCTACGCGGGCGGCTCGCTTCGTCC
TTTTGGGACTGTGGAAAGCGGTGCGCCCTCCCCCCGGGCTGCTTAAGTAC
GCCCTCAAAGTCACCCGGGGCATCGTTAACTTTCGGCGACGGCAAGCGCG
GCGGGAGTTGCAGCAACCTCAAGGCAGTGTGGGTGGTAACGGCGGCGTCG
GTGTTGGCGATCTATCGGAGAGCATGCGAAGGCAAGAGAGAAAGGAGTTC
TGGTACATGGTCGGCAGGAACCACACGTTCTGGTGCTTGAAGGTGCGATT
GGCGACTGTCGGACTCTACGCGGGCGGCTCGCTTCGTCCTTTTGGGACTG
TGGAAAGCGGTGCGCCCTCCCCCCGGGCTGCTTAAGTACGCCCTCAAAGT
CACCCGGGGCATCGTTAACTTTCGGCGACGGCAAGCGCGGCGGGAGTTGC
AGCAACCTCAAGGCAGTGTGGGTGGTAACGGCGGCGTCGGTGTTGGCGAT
CTATCGGAGAGCATGCGAAGGCAAGAGAGAAAGGAGTTCTGGTACATGGT
CGGCAGGAACCACACGTTCTGGTGCTTGAAGGTG
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