mRNA_H-elongata_contig95577.16962.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95577.16962.1
Unique NamemRNA_H-elongata_contig95577.16962.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig95577.16962.1 vs. uniprot
Match: A0A6H5KBH3_9PHAE (Protein-tyrosine-phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBH3_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 4.220e-36
Identity = 91/226 (40.27%), Postives = 109/226 (48.23%), Query Frame = 1 
Query:    1 LPELIPVEDRDKVHEIHHFSEQANWWVVPGRVMLGKYPGQIXXXXXXXXXXXXXXXX--DIVLRGKVTNLLSLQ--LPPQADEHRWSPPAEAEYGDDDGRFFKGFRAYRDDALAAVAE-----------------------------------------------------------GAEGGDARKGGRRELAFHHFPIPDLSPVENTALLGQLVEDLELLVMSDK 489
            LP L+P+ED D +++ HHF+E+ANW +VPG+V+LGKYPGQI                  DIVLRG VT+L  LQ  LPPQ DE +W PPA+    DD+G FF GFRAYR DA+AAV                                                             GA        G   LAFHHFPIPDLSP ENT +L  LV++LE LV S K
Sbjct:  100 LPNLVPIEDEDLIYKNHHFAERANW-LVPGKVLLGKYPGQIPADLTTGPTVQIARDRVLDIVLRGGVTDLYCLQAELPPQDDESQWGPPADK---DDNGMFFSGFRAYRGDAVAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEVVLGARGEEGLAFHHFPIPDLSPAENTEILAGLVDELEALVRSGK 321
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95577.16962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KBH3_9PHAE4.220e-3640.27Protein-tyrosine-phosphatase n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95577contigH-elongata_contig95577:192..1658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.3
Seed ortholog evalue3.2e-33
Seed eggNOG ortholog2880.D8LRV7
EggNOG free text desc.Cyclin-dependent kinase inhibitor 3 (CDKN3)
EggNOG OGs2BVII@1,2S80H@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein-tyrosine phosphatase-like
Ec32 orthologEc-08_002600.1
Exons3
Model size501
Cds size501
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95577.16962.1prot_H-elongata_contig95577.16962.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95577 192..1658 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931349.8576636-CDS-H-elongata_contig95577:191..4761622931349.8576636-CDS-H-elongata_contig95577:191..476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95577 192..476 -
1691679800.6108825-CDS-H-elongata_contig95577:191..4761691679800.6108825-CDS-H-elongata_contig95577:191..476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95577 192..476 -
1622931349.8801396-CDS-H-elongata_contig95577:973..11071622931349.8801396-CDS-H-elongata_contig95577:973..1107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95577 974..1107 -
1691679800.6279843-CDS-H-elongata_contig95577:973..11071691679800.6279843-CDS-H-elongata_contig95577:973..1107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95577 974..1107 -
1622931349.8974762-CDS-H-elongata_contig95577:1576..16581622931349.8974762-CDS-H-elongata_contig95577:1576..1658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95577 1577..1658 -
1691679800.638617-CDS-H-elongata_contig95577:1576..16581691679800.638617-CDS-H-elongata_contig95577:1576..1658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95577 1577..1658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95577.16962.1

>prot_H-elongata_contig95577.16962.1 ID=prot_H-elongata_contig95577.16962.1|Name=mRNA_H-elongata_contig95577.16962.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
LPELIPVEDRDKVHEIHHFSEQANWWVVPGRVMLGKYPGQIPADLPNDTQ
RVRDRIRDIVLRGKVTNLLSLQLPPQADEHRWSPPAEAEYGDDDGRFFKG
FRAYRDDALAAVAEGAEGGDARKGGRRELAFHHFPIPDLSPVENTALLGQ
LVEDLELLVMSDKARE*
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mRNA from alignment at H-elongata_contig95577:192..1658-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95577.16962.1 ID=mRNA_H-elongata_contig95577.16962.1|Name=mRNA_H-elongata_contig95577.16962.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1467bp|location=Sequence derived from alignment at H-elongata_contig95577:192..1658- (Himanthalia elongata Himel1 dioecious)
CTTCCTGAGTTAATCCCCGTGGAGGACAGGGACAAAGTTCACGAAATTCA
CCATTTTTCTGAGCAAGCAAACTGGTGGGTGGGTGGGCTTCATGCTGTAC
ACAAATAAACAAGTATACGAGATCTCTAGGCGGCATGTCCCAAAATATGT
GATATTTGTAGAGCAGTACTGCACGTCATACGGTAGAACAAAGCATCAAG
CTGTTTGAAGGGCATGTGTCCGTCCGACAGGTATGCGAGTCAGACCCTAA
TAGTCCCGCGAAAGCAGCGCCGTGCTCGTCTGCAACCGCTTCAAGCCGTG
CTCACGGCGTCGGGTGGTGCCTAGTAGGTAAGCAGTAACATCTTACTACC
CTCCACGCGAGCAGGAAGCGAAACGCGCAGGAGTTTCACACATTAAGCTT
CAAACACGCCCTTTACAGCACCGACTGACAGCACGAACCGTTTTGACTTT
CCCCCCCCCCCCCCCCCCACCCGCCCCTCGAGCGTGATAAGATATATGCC
AACCGACCATATTCTTGCTCCCCCTTACGCCATCGCGTTGACGAAGGCTA
GTACCGGGCAGGGTTATGCTCGGGAAGTACCCTGGCCAAATCCCGGCTGA
CTTGCCAAACGACACGCAGCGCGTTCGTGATCGCATCAGGGACATCGTTC
TGCGGGGAAAAGTGACCAATCTACTCTCGCTGCAGGTAGGCATACGACCT
TCAAGGGCGCTTGCTGTACGTAAAGAGGCTGGCGTAAATAACATTGGGGT
GTATATAGTTGTATTTAGTAGAATTTCGGACCTCGTCAACATCCACTGAC
GAGGGCAACAACTCGCCCTTGCACGATGGTCGATGCCCTGCTAGATTCAC
GGTTTCCTCGTCACATCTCCAAACGACGTCACAGCATGGCACACGTAACA
CCACGTTTTGATCGAGTTCTTTTGTACAAGACTGCGACAACCGAAAACCG
ATAACCGATCTTTGAGATGCCGGATAGACGAAGCATTGCAGGGAACAACA
ACAACAACAACAACAATAGCTAATAATATGCACAGAGAGAGAGAAAGAAA
GAGTCGGGCACAGTCGCCGAAGAAGAAACACCTCGGAAATACAATATTAC
TATCTTGCGGGTCGGCAGAGGAATCCAACCATCCAATCGGACAATCAAGC
AAGCAACCATTCGCAATCTCGTGCACGCATAGCTTCCCCCGCAGGCGGAC
GAACATCGGTGGTCCCCACCCGCAGAAGCGGAATACGGCGATGACGACGG
ACGGTTCTTCAAGGGATTCAGAGCGTACCGCGATGACGCGCTCGCGGCGG
TGGCGGAAGGGGCTGAGGGCGGGGACGCTCGGAAGGGTGGGCGAAGGGAG
CTTGCGTTCCACCATTTCCCTATACCGGACCTGTCCCCTGTTGAGAACAC
GGCATTGTTGGGGCAACTGGTGGAAGATCTGGAGCTCTTGGTGATGTCGG
ACAAGGCAAGAGAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig95577:192..1658-

>mRNA_H-elongata_contig95577.16962.1 ID=mRNA_H-elongata_contig95577.16962.1|Name=mRNA_H-elongata_contig95577.16962.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig95577:192..1658- (Himanthalia elongata Himel1 dioecious)
CTTCCTGAGTTAATCCCCGTGGAGGACAGGGACAAAGTTCACGAAATTCA
CCATTTTTCTGAGCAAGCAAACTGGTGGGTGGCTTCCTGAGTTAATCCCC
GTGGAGGACAGGGACAAAGTTCACGAAATTCACCATTTTTCTGAGCAAGC
AAACTGGTGGGTGGTACCGGGCAGGGTTATGCTCGGGAAGTACCCTGGCC
AAATCCCGGCTGACTTGCCAAACGACACGCAGCGCGTTCGTGATCGCATC
AGGGACATCGTTCTGCGGGGAAAAGTGACCAATCTACTCTCGCTGCAGTA
CCGGGCAGGGTTATGCTCGGGAAGTACCCTGGCCAAATCCCGGCTGACTT
GCCAAACGACACGCAGCGCGTTCGTGATCGCATCAGGGACATCGTTCTGC
GGGGAAAAGTGACCAATCTACTCTCGCTGCAGCTTCCCCCGCAGGCGGAC
GAACATCGGTGGTCCCCACCCGCAGAAGCGGAATACGGCGATGACGACGG
ACGGTTCTTCAAGGGATTCAGAGCGTACCGCGATGACGCGCTCGCGGCGG
TGGCGGAAGGGGCTGAGGGCGGGGACGCTCGGAAGGGTGGGCGAAGGGAG
CTTGCGTTCCACCATTTCCCTATACCGGACCTGTCCCCTGTTGAGAACAC
GGCATTGTTGGGGCAACTGGTGGAAGATCTGGAGCTCTTGGTGATGTCGG
ACAAGGCAAGAGAATAACTTCCCCCGCAGGCGGACGAACATCGGTGGTCC
CCACCCGCAGAAGCGGAATACGGCGATGACGACGGACGGTTCTTCAAGGG
ATTCAGAGCGTACCGCGATGACGCGCTCGCGGCGGTGGCGGAAGGGGCTG
AGGGCGGGGACGCTCGGAAGGGTGGGCGAAGGGAGCTTGCGTTCCACCAT
TTCCCTATACCGGACCTGTCCCCTGTTGAGAACACGGCATTGTTGGGGCA
ACTGGTGGAAGATCTGGAGCTCTTGGTGATGTCGGACAAGGCAAGAGAAT
AA
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