mRNA_H-elongata_contig9540.16945.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig9540.16945.1 vs. uniprot
Match: D8LRM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM8_ECTSI) HSP 1 Score: 304 bits (778), Expect = 2.390e-102 Identity = 142/194 (73.20%), Postives = 164/194 (84.54%), Query Frame = 1
Query: 1 GVIEDHRQQHLLRGHDMEISSLAMSPSGSLIATGQCGSTRRKGYPSPVYLWNYATRTPLFVLEGLSKGVQHLSFSPDQRFLLGCGGDHLVYVWDTNSGELVTGKQYAESATLGEWTAVKRSGRRDVYHICLCIGSGIVVLEMNFDPARRQWTLSGGPMTTPSSGLRRRYHCSALHDGGKFLLCGTDVGDLVVFG 582
G I D QQHLLRGHDMEIS+L +S SG+LIATGQ GST+ KGYP+PV+LW+Y TRT LFV +GL++ V HLSFSPD RFLLGCGGD LVYVWDT++GELVTGKQYAE +TLGEWTAV +GRR VY ICLC G+ ++ LE+ FDP+RRQW +SGGPM TPSSGLRR+Y CSAL GG FLLCGTDVGD+VVFG
Sbjct: 44 GSISDPHQQHLLRGHDMEISALTVSSSGALIATGQRGSTKVKGYPAPVFLWDYKTRTSLFVYQGLTECVCHLSFSPDARFLLGCGGDGLVYVWDTSTGELVTGKQYAEPSTLGEWTAVNLAGRRPVYEICLCTGNDVLALELRFDPSRRQWAISGGPMATPSSGLRRQYKCSALLPGGGFLLCGTDVGDMVVFG 237
BLAST of mRNA_H-elongata_contig9540.16945.1 vs. uniprot
Match: A0A7S2UWQ1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWQ1_9STRA) HSP 1 Score: 193 bits (490), Expect = 1.250e-54 Identity = 98/195 (50.26%), Postives = 129/195 (66.15%), Query Frame = 1
Query: 1 GVIEDHRQQHLLRGHDMEISSLAMSPSGSLIATGQCGSTRRKGYPSPVYLWNYATRTPLFVLEGLSKGVQHLSFSPDQRFLLGCGGDHLVYVWDTNSGELVTGKQYAESATLGEW-TAVKRSG-RRDVYHICLCIGSGIVVLEMNFDPARRQWTLSGGPMTTPSSGLRRRYHCSALHDGGKFLLCGTDVGDLVVF 579
G + D Q LRGHDME+S+LA+SPSG+LIA+GQ G+T KGY +PV +W ATR LF+LEG++ V LSFSPD+ F+ G G D L+Y+W+ GE+V GK+YA ++ +W +A +G RR Y + L I S + V + FDP+RRQW L PM P SGL R Y SAL + +F +CGT VGDL VF
Sbjct: 66 GDLADPHQSSYLRGHDMEVSTLAISPSGNLIASGQMGTTHHKGYYAPVMIWEMATRRQLFILEGITGRVNSLSFSPDEAFVCGYGQDGLLYIWELQGGEVVFGKRYAAPVSIFQWCSAYNEAGNRRPKYQVILIIQSEVKVGTLAFDPSRRQWNLDLEPMNMPGSGLVRDYLVSALTEDRQFCMCGTAVGDLAVF 260
BLAST of mRNA_H-elongata_contig9540.16945.1 vs. uniprot
Match: A0A7S2BHX7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BHX7_9STRA) HSP 1 Score: 190 bits (483), Expect = 2.630e-53 Identity = 86/193 (44.56%), Postives = 128/193 (66.32%), Query Frame = 1
Query: 1 GVIEDHRQQHLLRGHDMEISSLAMSPSGSLIATGQCGSTRRKGYPSPVYLWNYATRTPLFVLEGLSKGVQHLSFSPDQRFLLGCGGDHLVYVWDTNSGELVTGKQYAESATLGEWTAVKRSGRRDVYHICLCIGSGIVVLEMNFDPARRQWTLSGGPMTTPSSGLRRRYHCSALHDGGKFLLCGTDVGDLVVF 579
G + D Q LRGHDME+++LA+S +G+ IA+GQ G+T RKG+ +PV +W++ TR PL L+G ++ V L FSPD++FL CG D L+ +WD +GEL+ GK++ + + +W V + GRR+VY I + + + + ++ FDPAR+QW L G M P++G+ R Y CS+ G LL GT VGDL+VF
Sbjct: 143 GDLNDPHNQEFLRGHDMEVTALAVSATGAFIASGQAGTTHRKGFGAPVIVWDFETRRPLLTLQGHTEKVNILRFSPDEKFLAACGQDLLLQIWDLQTGELILGKKFKQVVAMFQWCDVNQKGRRNVYDIAIGSSNNVALDQLYFDPARQQWILDGTSMAMPTAGMTRDYLCSSRSADGDELLAGTSVGDLLVF 335
BLAST of mRNA_H-elongata_contig9540.16945.1 vs. uniprot
Match: A0A835ZHC1_9STRA (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHC1_9STRA) HSP 1 Score: 186 bits (472), Expect = 7.570e-52 Identity = 95/203 (46.80%), Postives = 126/203 (62.07%), Query Frame = 1
Query: 4 VIEDHRQQHLLRGHDMEISSLAMSPSGSLIATGQCGSTRRKGYPSPVYLWNYATRTPLFV-LEGLSKGVQHLSFSPDQRFLLGCGGDHLVYVWDTNSGELVTGKQY-----AESATLGEWTAVKRSGRRDVYHICLCIGSGIVVLEMNFDPARRQWTLSGGPMTTPSSGLRRRYHCSALHD-----GGKFLLCGTDVGDLVVF 579
++ D +Q LLRGHD EIS+LA SPSG LIATGQ GSTR KG PSPV +W Y + T + L GL++GV L+FSPD +FL G D ++Y+WD +GE+ + Y A + +W V RR Y LC+G+ +V + FD ARRQW + PM P++GL+R Y CSA+ G +LLCGT+VGDLVV+
Sbjct: 84 LVSDPHRQELLRGHDEEISALASSPSGDLIATGQAGSTRAKGSPSPVIVWAYGSPTKARLKLAGLTQGVTLLAFSPDAQFLAGSANDGMLYIWDAATGEVAFCRPYVRRDGASALRFFQWCGVDAGARRRAYRALLCLGADVVAADFAFDAARRQWDVRTAPMAVPATGLQRTYLCSAVTTPETAAGASYLLCGTEVGDLVVY 286
BLAST of mRNA_H-elongata_contig9540.16945.1 vs. uniprot
Match: A0A7S2SRF7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRF7_9STRA) HSP 1 Score: 179 bits (453), Expect = 3.170e-49 Identity = 85/193 (44.04%), Postives = 123/193 (63.73%), Query Frame = 1
Query: 1 GVIEDHRQQHLLRGHDMEISSLAMSPSGSLIATGQCGSTRRKGYPSPVYLWNYATRTPLFVLEGLSKGVQHLSFSPDQRFLLGCGGDHLVYVWDTNSGELVTGKQYAESATLGEWTAVKRSGRRDVYHICLCIGSGIVVLEMNFDPARRQWTLSGGPMTTPSSGLRRRYHCSALHDGGKFLLCGTDVGDLVVF 579
G + D QQ LRGHDMEI+ LA+S +GSL+A+GQ G+ KGY +PV +W+ T+ +F L G ++GV L FSPD++FL GCG D +V++WD +GE+V GK+ A+ +L W + GRR Y + L + E+ FDP+R+QW L ++ P++G+ R Y CSA G LL G+ VGD++VF
Sbjct: 89 GDVNDPHQQEFLRGHDMEITCLAISGTGSLLASGQLGTVHHKGYGAPVIVWDLNTKRAVFTLHGHTEGVDLLRFSPDEKFLCGCGRDCVVHIWDMQTGEVVYGKKLAKPVSLFHWCDMHARGRRTSYDLALSTAQETTMNELFFDPSRQQWMLEPKQLSLPTAGMVREYCCSARSADGDELLAGSTVGDMLVF 281
BLAST of mRNA_H-elongata_contig9540.16945.1 vs. uniprot
Match: F0YSJ0_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YSJ0_AURAN) HSP 1 Score: 165 bits (417), Expect = 1.100e-46 Identity = 88/202 (43.56%), Postives = 122/202 (60.40%), Query Frame = 1
Query: 1 GVIEDHRQQHLLRGHDMEISSLAMSPSGSLIATGQCGSTRRKGYPSPVYLWNYATRTPLFVLEGLSKGVQHLSFSPDQRFLLGCGGDHLVYVWDTNSGELVTGKQYAESATLGEWTAVKRSGRRDVYHICLCIGSGIVVLE---MNFDPARRQWTLSGGPMTTPSSGLRRRYHCSALH-----DGG---KFLLCGTDVGDLV 573
G ++D Q LLR HD IS+LA S GSL+A+GQ GST G+ +PV +W+ + LF L G+++ V L FS D RFL CG D ++YVWD SGE+V GK+YA+ +L +W GRR VY + + +G+ +E + FD R+QW L+ P+ P++G+ R Y CSAL DGG K+LL GT GDL+
Sbjct: 95 GDLDDPHAQKLLRAHDEPISALATSVDGSLLASGQVGSTHIPGFAAPVVVWDRVSERALFKLRGITQRVNILEFSDDMRFLAACGEDCVLYVWDATSGEVVFGKRYAKRLSLFQWIGAMDRGRRRVYRLATAV-TGVAEVEHGELCFDATRQQWQLASAPVVMPAAGMAREYKCSALATYPSPDGGEPEKYLLAGTMEGDLL 295
BLAST of mRNA_H-elongata_contig9540.16945.1 vs. uniprot
Match: A0A7S1XWX6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWX6_9STRA) HSP 1 Score: 167 bits (423), Expect = 8.240e-46 Identity = 80/193 (41.45%), Postives = 118/193 (61.14%), Query Frame = 1
Query: 1 GVIEDHRQQHLLRGHDMEISSLAMSPSGSLIATGQCGSTRRKGYPSPVYLWNYATRTPLFVLEGLSKGVQHLSFSPDQRFLLGCGGDHLVYVWDTNSGELVTGKQYAESATLGEWTAVKRSGRRDVYHICLCIGSGIVVLEMNFDPARRQWTLSGGPMTTPSSGLRRRYHCSALHDGGKFLLCGTDVGDLVVF 579
G + D Q LRGHDM +++LA+SP+G+LIA+GQ GS KG+ +PV +W+Y TR+PLF L G ++ V ++ FSPD+RFL G D L+YVWD +GE+V K++ ++ WTAV RR Y C+ + FDP RRQW L G + P+ R YH +A+ +++L G+ +G++ VF
Sbjct: 59 GSLSDPHAQVCLRGHDMPVTALAISPTGALIASGQEGSIHHKGFHAPVVIWDYETRSPLFTLLGHTRRVANVRFSPDERFLCATGEDSLLYVWDVGTGEVVFAKRFNSPVSIFRWTAVVDGPRRPHYMASYCVKQEVFAATFAFDPVRRQWNLDGQLVACPNKA-ERTYHDAAVTMDARYMLAGSALGEMAVF 250
BLAST of mRNA_H-elongata_contig9540.16945.1 vs. uniprot
Match: A0A7S1UCE0_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCE0_9STRA) HSP 1 Score: 167 bits (423), Expect = 4.960e-45 Identity = 80/193 (41.45%), Postives = 118/193 (61.14%), Query Frame = 1
Query: 1 GVIEDHRQQHLLRGHDMEISSLAMSPSGSLIATGQCGSTRRKGYPSPVYLWNYATRTPLFVLEGLSKGVQHLSFSPDQRFLLGCGGDHLVYVWDTNSGELVTGKQYAESATLGEWTAVKRSGRRDVYHICLCIGSGIVVLEMNFDPARRQWTLSGGPMTTPSSGLRRRYHCSALHDGGKFLLCGTDVGDLVVF 579
G + D Q LRGHDM +++LA+SP+G+LIA+GQ GS KG+ +PV +W+Y TR+PLF L G ++ V ++ FSPD+RFL G D L+YVWD +GE+V K++ ++ WTAV RR Y C+ + FDP RRQW L G + P+ R YH +A+ +++L G+ +G++ VF
Sbjct: 59 GSLSDPHAQVCLRGHDMPVTALAISPTGALIASGQEGSIHHKGFHAPVVIWDYETRSPLFTLLGHTRRVANVRFSPDERFLCATGEDSLLYVWDVGTGEVVFAKRFNSPVSIFRWTAVVDGPRRPHYMASYCVKQEVFAATFAFDPVRRQWNLDGQLVACPNKA-ERTYHDAAVTMDARYMLAGSALGEMAVF 250
BLAST of mRNA_H-elongata_contig9540.16945.1 vs. uniprot
Match: A0A7S3ZQS9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZQS9_9STRA) HSP 1 Score: 159 bits (403), Expect = 4.330e-42 Identity = 87/204 (42.65%), Postives = 121/204 (59.31%), Query Frame = 1
Query: 1 GVIEDHRQQHLLRGHDMEISSLAMSPSGSLIATGQCGSTRRKGYPSPVYLWNYATRTPLFVLEGLSKGVQHLSFSPDQRFLLGCGGDHLVYVWDTNSGELVTGKQYAESATLGEWTAVKRSGRRDVYHICLCIGSGIVVL---EMNFDPARRQWTLSGGPMTTPSSGLRRRYHCSAL---------HDGGKFLLCGTDVGDLVV 576
G + D +Q LLR HD IS+LA S GSL+A+GQ GSTR GY + V +W+ T+T F L GL++ V L FS D RFL G D ++Y+WDT SGE+V GK+Y + +L +W + GRR VY + + GI + E++FD R+QW L+ P+ P++G+ R Y CS L + K+LL GT GDL+V
Sbjct: 73 GDLTDPHKQKLLRAHDEPISALATSRDGSLLASGQLGSTRVPGYAALVVIWDTLTQTVAFRLRGLTQRVVILEFSDDMRFLAAAGEDCVLYIWDTASGEVVFGKRYIKQLSLFQWVGARDCGRRRVYRLATAM-RGIAEVYHGELSFDATRQQWQLATVPVVMPAAGMARNYRCSTLATYAAEAPEEEPAKYLLAGTMEGDLLV 275
BLAST of mRNA_H-elongata_contig9540.16945.1 vs. uniprot
Match: A0A067D1B9_SAPPC (ANAPC4_WD40 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D1B9_SAPPC) HSP 1 Score: 138 bits (348), Expect = 1.180e-34 Identity = 71/191 (37.17%), Postives = 103/191 (53.93%), Query Frame = 1
Query: 7 IEDHRQQHLLRGHDMEISSLAMSPSGSLIATGQCGSTRRKGYPSPVYLWNYATRTPLFVLEGLSKGVQHLSFSPDQRFLLGCGGDHLVYVWDTNSGELVTGKQYAESATLGEWTAVKRSGRRDVYHICLCIGSGIVVLEMNFDPARRQWTLSGGPMTTPSSGLRRRYHCSALHDGGKFLLCGTDVGDLVVF 579
+ D Q LRGHD EISSL +S SG L+A+GQ ST+R G + + +W+ ++ L+ L G + L+FSPD FLLG G D V +WD + E+V + Y T+ W V+ RR Y + S ++V E+++D Q+ L P PS+G+ R Y + + LL GT G+LVVF
Sbjct: 48 VSDTHAQEFLRGHDEEISSLCVSRSGVLLASGQLPSTKRNGAGAAIVVWDLYAKSELYQLHGFFCKITKLAFSPDDHFLLGAGADGSVILWDLRTSEVVVTRSYGSPVTILNWGKVEEKTRRPKYTLLFAHSSQLLVSELSYDIGSMQYKLESYPCAMPSTGMVREYLAACMTQTNDTLLAGTYAGELVVF 238 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9540.16945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9540.16945.1 >prot_H-elongata_contig9540.16945.1 ID=prot_H-elongata_contig9540.16945.1|Name=mRNA_H-elongata_contig9540.16945.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp GVIEDHRQQHLLRGHDMEISSLAMSPSGSLIATGQCGSTRRKGYPSPVYLback to top mRNA from alignment at H-elongata_contig9540:2512..4128+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig9540.16945.1 ID=mRNA_H-elongata_contig9540.16945.1|Name=mRNA_H-elongata_contig9540.16945.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1617bp|location=Sequence derived from alignment at H-elongata_contig9540:2512..4128+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig9540:2512..4128+ >mRNA_H-elongata_contig9540.16945.1 ID=mRNA_H-elongata_contig9540.16945.1|Name=mRNA_H-elongata_contig9540.16945.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1170bp|location=Sequence derived from alignment at H-elongata_contig9540:2512..4128+ (Himanthalia elongata Himel1 dioecious)back to top |