mRNA_H-elongata_contig95229.16930.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95229.16930.1
Unique NamemRNA_H-elongata_contig95229.16930.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig95229.16930.1 vs. uniprot
Match: D7G5K8_ECTSI (Scaper protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K8_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 5.780e-27
Identity = 57/75 (76.00%), Postives = 62/75 (82.67%), Query Frame = 3 
Query:   18 IMSPLKGSSSNMAS-KGTSGLRGRSGGDSTAHGFNQRLWGYLFRNVNRAVDELYYLCEAECSATHCTEAAELLEG 239
            + SP KGS+ +++S K     RG SG DSTA GFNQRLWGYLFRNVNRAVDELYYLCEAE SATHCTEAAELLEG
Sbjct:    1 MSSPFKGSNGSLSSSKRAPSCRGNSGSDSTAQGFNQRLWGYLFRNVNRAVDELYYLCEAEGSATHCTEAAELLEG 75
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BLAST of mRNA_H-elongata_contig95229.16930.1 vs. uniprot
Match: A0A7S2WB00_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WB00_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.010e-13
Identity = 34/43 (79.07%), Postives = 35/43 (81.40%), Query Frame = 3 
Query:  111 GFNQRLWGYLFRNVNRAVDELYYLCEAECSATHCTEAAELLEG 239
            G  QRLW YLFRNVNRAVDELYYLCEAE S  HC EAA+LLE 
Sbjct:  102 GSQQRLWSYLFRNVNRAVDELYYLCEAEGSTEHCEEAAKLLES 144
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BLAST of mRNA_H-elongata_contig95229.16930.1 vs. uniprot
Match: A0A1W0A180_9STRA (Farnesyl pyrophosphate synthetase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A180_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.630e-9
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 3 
Query:  114 FNQRLWGYLFRNVNRAVDELYYLCEAECSATHCTEAAELLEG 239
            F +RLW YLFRNV+RAVDELY +CE E   T C EAA +L+G
Sbjct:   15 FKERLWEYLFRNVHRAVDELYCMCELESLPTRCEEAARVLQG 56
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BLAST of mRNA_H-elongata_contig95229.16930.1 vs. uniprot
Match: A0A2Z7AJ01_9LAMI (SCAPER_N domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AJ01_9LAMI)

HSP 1 Score: 57.4 bits (137), Expect = 2.680e-8
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 3 
Query:  114 FNQRLWGYLFRNVNRAVDELYYLCEAECSATHCTEAAELLE 236
            F +RLWG+LF N+NRAVDELY LCE EC      EA+ +L+
Sbjct:   74 FRERLWGFLFENLNRAVDELYLLCELECDLDQMKEASLVLD 114
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BLAST of mRNA_H-elongata_contig95229.16930.1 vs. uniprot
Match: A0A485L4P2_9STRA (Aste57867_15680 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L4P2_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.670e-8
Identity = 26/40 (65.00%), Postives = 28/40 (70.00%), Query Frame = 3 
Query:  114 FNQRLWGYLFRNVNRAVDELYYLCEAECSATHCTEAAELL 233
            F  RLW YLFRNVN AVDELY +CE E S   C EAA +L
Sbjct:   68 FKMRLWDYLFRNVNSAVDELYCMCELESSTPRCEEAARVL 107
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BLAST of mRNA_H-elongata_contig95229.16930.1 vs. uniprot
Match: A0A1Y1HSX8_KLENI (SCAPER_N domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HSX8_KLENI)

HSP 1 Score: 58.5 bits (140), Expect = 3.760e-8
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 3 
Query:   90 GGDSTAHG-FNQRLWGYLFRNVNRAVDELYYLCEAECSATHCTEAAELL 233
            GG++   G F +RLW YLF N+ R++DELY+LCE EC   H  EA ++L
Sbjct: 1354 GGENADRGVFKERLWSYLFDNLGRSIDELYFLCELECDEAHMREAMQVL 1402
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BLAST of mRNA_H-elongata_contig95229.16930.1 vs. uniprot
Match: A0A2Z7AIQ2_9LAMI (SCAPER_N domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AIQ2_9LAMI)

HSP 1 Score: 57.4 bits (137), Expect = 9.500e-8
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 3 
Query:  114 FNQRLWGYLFRNVNRAVDELYYLCEAECSATHCTEAAELLE 236
            F +RLWG+LF N+NRAVDELY LCE EC      EA+ +L+
Sbjct:   74 FRERLWGFLFENLNRAVDELYLLCELECDLDQMKEASLVLD 114
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BLAST of mRNA_H-elongata_contig95229.16930.1 vs. uniprot
Match: A0A5A7Q883_STRAF (S phase cyclin A-associated protein in theendoplasmic reticulum n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7Q883_STRAF)

HSP 1 Score: 57.4 bits (137), Expect = 9.530e-8
Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 3 
Query:  114 FNQRLWGYLFRNVNRAVDELYYLCEAECSATHCTEAAELLE 236
            F +RLWG+LF N+NRAVDELY LCE EC      EA  +LE
Sbjct:  337 FRERLWGFLFENLNRAVDELYLLCELECDLDQMKEANLVLE 377
[Close]
BLAST of mRNA_H-elongata_contig95229.16930.1 vs. uniprot
Match: A0A8J5HM40_ZINOF (SCAPER_N domain-containing protein n=7 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5HM40_ZINOF)

HSP 1 Score: 57.4 bits (137), Expect = 9.540e-8
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 3 
Query:  114 FNQRLWGYLFRNVNRAVDELYYLCEAECSATHCTEAAELLE 236
            F QRLW +LF N+NRAVDELY LCE EC      EAA +LE
Sbjct:  375 FRQRLWCFLFENLNRAVDELYLLCELECDMEQMDEAALVLE 415
[Close]
BLAST of mRNA_H-elongata_contig95229.16930.1 vs. uniprot
Match: A0A498I0V2_MALDO (SCAPER_N domain-containing protein n=5 Tax=Maleae TaxID=721813 RepID=A0A498I0V2_MALDO)

HSP 1 Score: 56.6 bits (135), Expect = 1.780e-7
Identity = 26/47 (55.32%), Postives = 30/47 (63.83%), Query Frame = 3 
Query:   96 DSTAHGFNQRLWGYLFRNVNRAVDELYYLCEAECSATHCTEAAELLE 236
            D +   F QRLW +LF N+NRAVDELY LCE EC      EA  +LE
Sbjct:  359 DESKERFRQRLWCFLFENLNRAVDELYLLCELECDVEQMKEAILVLE 405
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95229.16930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5K8_ECTSI5.780e-2776.00Scaper protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A7S2WB00_9STRA1.010e-1379.07Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A1W0A180_9STRA1.630e-964.29Farnesyl pyrophosphate synthetase n=1 Tax=Thrausto... [more]
A0A2Z7AJ01_9LAMI2.680e-858.54SCAPER_N domain-containing protein n=1 Tax=Dorcoce... [more]
A0A485L4P2_9STRA3.670e-865.00Aste57867_15680 protein n=1 Tax=Aphanomyces stella... [more]
A0A1Y1HSX8_KLENI3.760e-851.02SCAPER_N domain-containing protein n=1 Tax=Klebsor... [more]
A0A2Z7AIQ2_9LAMI9.500e-858.54SCAPER_N domain-containing protein n=1 Tax=Dorcoce... [more]
A0A5A7Q883_STRAF9.530e-860.98S phase cyclin A-associated protein in theendoplas... [more]
A0A8J5HM40_ZINOF9.540e-863.41SCAPER_N domain-containing protein n=7 Tax=Zingibe... [more]
A0A498I0V2_MALDO1.780e-755.32SCAPER_N domain-containing protein n=5 Tax=Maleae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95229contigH-elongata_contig95229:710..1361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.5e-22
Seed eggNOG ortholog2880.D7G5K8
Preferred nameSCAPER
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0015630,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464
EggNOG OGsKOG4722@1,KOG4722@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size242
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95229.16930.1prot_H-elongata_contig95229.16930.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95229 710..1341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931347.083826-CDS-H-elongata_contig95229:709..7941622931347.083826-CDS-H-elongata_contig95229:709..794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95229 710..794 -
1691679799.4813662-CDS-H-elongata_contig95229:709..7941691679799.4813662-CDS-H-elongata_contig95229:709..794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95229 710..794 -
1622931347.0966823-CDS-H-elongata_contig95229:1204..13411622931347.0966823-CDS-H-elongata_contig95229:1204..1341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95229 1205..1341 -
1691679799.4938316-CDS-H-elongata_contig95229:1204..13411691679799.4938316-CDS-H-elongata_contig95229:1204..1341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95229 1205..1341 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931347.1115456-UTR-H-elongata_contig95229:1341..13611622931347.1115456-UTR-H-elongata_contig95229:1341..1361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95229 1342..1361 -
1691679799.5068135-UTR-H-elongata_contig95229:1341..13611691679799.5068135-UTR-H-elongata_contig95229:1341..1361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95229 1342..1361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95229.16930.1

>prot_H-elongata_contig95229.16930.1 ID=prot_H-elongata_contig95229.16930.1|Name=mRNA_H-elongata_contig95229.16930.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MSPLKGSSSNMASKGTSGLRGRSGGDSTAHGFNQRLWGYLFRNVNRAVDE
LYYLCEAECSATHCTEAAELLEG*
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mRNA from alignment at H-elongata_contig95229:710..1361-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95229.16930.1 ID=mRNA_H-elongata_contig95229.16930.1|Name=mRNA_H-elongata_contig95229.16930.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=652bp|location=Sequence derived from alignment at H-elongata_contig95229:710..1361- (Himanthalia elongata Himel1 dioecious)
GCCGGAAGAGCAGCCCGATCATGAGTCCACTTAAGGGCTCGAGCAGCAAC
ATGGCGTCCAAGGGCACCTCCGGCTTGAGAGGGCGCAGCGGAGGCGACTC
AACCGCGCATGGCTTCAATCAGCGCCTGTGGGGATACCTCTTCCGGAACG
TGAACCGGTAATGTCGCGGCAGCGCGCGTATGCGGGCTGGGACGGCCCGT
TCGCTCACAACCCTTGCGACACGATTGGTGGTGCATGCGTGGAACTCATT
GATCACCTGTAAATTATAGCGGTATGATTGATTTTCCTTAGCCATTGCCA
TGAACAAACCCGAAGCCAAGCCATTCAGTTCGGTAGCCTATTTTGCATGT
GTGTGAAGGTTTTGCGAGTCGGGTTCTGGAGAATGTAGTGTCTCATGCCG
TCGGCGGAATCTAATGGGTGACATCAGGCAAATTATGTAGCATGTATAAA
ATATGCATACAATCGCGCGCGCGCAGCCAGTGCTGGCATATGTATTAAAG
GAAGCACACGACTGTCTTGTACCGCGATTCGTTCCCCGCAACCAAACTTG
ACCGGCCGGACGCGCAGCGCCGTAGACGAGCTTTACTACCTCTGCGAGGC
CGAGTGTAGCGCCACGCACTGCACGGAGGCGGCGGAACTCTTGGAAGGGT
GA
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Coding sequence (CDS) from alignment at H-elongata_contig95229:710..1361-

>mRNA_H-elongata_contig95229.16930.1 ID=mRNA_H-elongata_contig95229.16930.1|Name=mRNA_H-elongata_contig95229.16930.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig95229:710..1361- (Himanthalia elongata Himel1 dioecious)
ATGAGTCCACTTAAGGGCTCGAGCAGCAACATGGCGTCCAAGGGCACCTC
CGGCTTGAGAGGGCGCAGCGGAGGCGACTCAACCGCGCATGGCTTCAATC
AGCGCCTGTGGGGATACCTCTTCCGGAACGTGAACCGATGAGTCCACTTA
AGGGCTCGAGCAGCAACATGGCGTCCAAGGGCACCTCCGGCTTGAGAGGG
CGCAGCGGAGGCGACTCAACCGCGCATGGCTTCAATCAGCGCCTGTGGGG
ATACCTCTTCCGGAACGTGAACCGCGCCGTAGACGAGCTTTACTACCTCT
GCGAGGCCGAGTGTAGCGCCACGCACTGCACGGAGGCGGCGGAACTCTTG
GAAGGGTGACGCCGTAGACGAGCTTTACTACCTCTGCGAGGCCGAGTGTA
GCGCCACGCACTGCACGGAGGCGGCGGAACTCTTGGAAGGGTGA
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