mRNA_H-elongata_contig95064.16917.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95064.16917.1
Unique NamemRNA_H-elongata_contig95064.16917.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig95064.16917.1 vs. uniprot
Match: A0A6H5L0B8_9PHAE (Nfu_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0B8_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 4.650e-83
Identity = 169/305 (55.41%), Postives = 199/305 (65.25%), Query Frame = 1
Query:   28 VPAAVEALGGPADSLDPALLMISALGEDGSSLSKKHSEMDGITVRLQVSNGIPIQVEACPPGGTPVRRKLSPRFVDAMNDFVRSSGDEMAFFKGRRWLPRGVRYPED-----------------SNCGAAASAEEALLAVVDEVELAYHESRLRGVVADAV-------QRAPGGGAGSGMAGETGAQAEIKEIQAAAAGLRASTNED---IVAAVDRLCDLAGDAPPPSATNSVDRECSTTARDALDALIGFVSSGTGPVAARRAAVAFVGGVGEAAGATGLDAVASVFRGDRSPGVRRTAGDAL 861
            VPAAV+ALGG A SLDP  L++++ GE GS+   K SEMDGI +RLQVSNGIPIQVEACPPGGTP+RRKLS RFV+AM +FV  SGDEMAFFKGR WLPRGVRYP +                 S   AA  AEEAL A VDEVELAYHESRLRG V  A+       + A            T  ++   E++AA   L+ S   D   +VAAVD LC LAGD                 ++DALDAL+GF +SG GPV ARRAAVA++GG G+AAG+ GL AV++VFRGD + GVRRTAGDAL
Sbjct:  132 VPAAVKALGGAASSLDPLTLLMASGGEGGSAW--KRSEMDGIAIRLQVSNGIPIQVEACPPGGTPLRRKLSSRFVEAMTEFVAGSGDEMAFFKGREWLPRGVRYPAEEGGDDEDGHGEELTGATSKKTAAEFAEEALAAAVDEVELAYHESRLRGAVHAALNLLQKNAEAAEASXXXXXXXXXTSGESTA-EVRAATTVLQRSPAADKGEVVAAVDTLCALAGDG----------------SKDALDALVGFAASGEGPVPARRAAVAYIGGAGDAAGSAGLKAVSAVFRGDNNAGVRRTAGDAL 417          
BLAST of mRNA_H-elongata_contig95064.16917.1 vs. uniprot
Match: A0A7S2XB48_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XB48_9EUKA)

HSP 1 Score: 97.1 bits (240), Expect = 1.080e-19
Identity = 83/251 (33.07%), Postives = 120/251 (47.81%), Query Frame = 1
Query:  115 SSLSKKHSEMDGITVRLQVSNGIPIQVEACPPGGTPVRRKLSPRFVDAMNDFVRSSGDEMAFFKGRRWLPRGVRYPEDSNCGAAASAEEALLAVVDEVELAYHESRLRGVVADAVQRAPGGGAGSGMAGETGAQAEIKEIQAAAAGLRASTNEDIVAAVDRLCDLAGDAPPPSATNSVDRECSTTARDALDALIGFVSSGTGPVAARRAAVAFVGGVGEAAGATG--LDAVASVFRGDRSPGVRRTAGDAL 861
            SS S   SEM GI +RLQVSNGIPIQ+EA    GT  RRKLS RF +++  F+ + G++  FF GR+WL +G+RY         AS  EAL  + DE+E  Y   RL  + ++   +A                  + ++Q     L        +A+VD + ++A     PSA  +        A DAL   +   S          A++  +G   E  G  G  +D ++  F  + +P +RRTAGDAL
Sbjct:    2 SSSSSSSSEMQGIQMRLQVSNGIPIQIEAKSTDGTSDRRKLSGRFEESIMAFLSTPGNDQLFFDGRKWLNKGLRYGH-------ASLSEALDTLADEIETMYPPERLNALASEDSNQA------------------LADLQPLLKDLHD------LASVDTVAEIAQKHEDPSARKA--------AIDALVRFVQRGSGNMATRRHAVASLGIMGDAIEELGVAGAVVDCLSFCFENEPAPFLRRTAGDAL 213          
BLAST of mRNA_H-elongata_contig95064.16917.1 vs. uniprot
Match: A0A7S3YPQ0_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YPQ0_9EUKA)

HSP 1 Score: 92.0 bits (227), Expect = 1.480e-17
Identity = 54/138 (39.13%), Postives = 78/138 (56.52%), Query Frame = 1
Query:   40 VEALGGPADSLDPALLMISALGEDGSSLSKKHSEMDGITVRLQVSNGIPIQVEACPPGGTPVRRKLSPRFVDAMNDFVRSSGDEMAFFKGRRWLPRGVRYPEDSNCGAAASAEEALLAVVDEVELAYHESRLRGVVAD 453
            ++ALGG + SL     ++              S+M+GI +RLQVSNGIPIQ+EA    G   RRKLS RF ++++ F+   G++ AFF GR+WL +G+RY          S  EAL  + DE+E  Y   RL+ + A+
Sbjct:   48 IDALGGASPSLSLPTNLLLTEXXXXXXXXXXXSDMEGIQMRLQVSNGIPIQIEAKAMDGMSERRKLSGRFEESISTFLSIPGNDQAFFDGRKWLNKGLRYGH-------VSLSEALDTLADEIETMYPPQRLKALAAE 178          
BLAST of mRNA_H-elongata_contig95064.16917.1 vs. uniprot
Match: A0A7S0H0H6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H0H6_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 1.320e-15
Identity = 48/103 (46.60%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  148 GITVRLQVSNGIPIQVEA-CPPGGTPVRRKLSPRFVDAMNDFVRSSGDEMAFFKGRRWLPRGVRYPEDSNCGAAASAEEALLAVVDEVELAYHESRLRGVVAD 453
            GI +RLQVSNGIPIQVEA C   GT  R KLS RF +A+ DF++  G+E +FF+GR+WL +G+RY            ++++  +  EVE  Y   RLR +V D
Sbjct:  173 GIKMRLQVSNGIPIQVEATCISDGTSKRYKLSGRFEEAIADFLKIPGNEQSFFQGRKWLNKGIRYE-------TTDIDDSITQMASEVEEMYPAYRLRALVED 268          
BLAST of mRNA_H-elongata_contig95064.16917.1 vs. uniprot
Match: A0A7S3VDY6_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VDY6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 9.420e-15
Identity = 100/322 (31.06%), Postives = 137/322 (42.55%), Query Frame = 1
Query:   64 DSLDPALLMISALGEDGSSLSKKHSEMDGITVRLQVSNGIPIQVEACPPGGTPVRRKLSPRFVDAMNDFVR----------SSGDEMAFFKGRRWLPRGVRY-PE----------DSNCGAAASA----------EEALLAVVDEVELAYHESRLRGVVADAVQRAPGGGAGSGMAGETGAQAEIKEIQAAAAGLRASTNEDIV-------------AAVDRLCDLA--GDAPPPSATNSVDRECSTTARDALDALIGFVSSGTGPVAARRAAVAFVGGVGEAAGATG----------LDAVASVFRGDRSPGVRRTAGDAL 861
            D L   LL +++    GS  S   S    + +R+Q SN IPIQVE     GT  RRKLSP+F ++M   ++          ++ +++ FF GR+W+ RG+RY PE          DS    A+S           E  L    DE++ AY   RL G+VA++   +P           T    E +  +        S N   V              AVDR CDLA  GD                    AL  L  FVSS  G + ARR A+AF+GG G+    T             A+ S  + ++SP +RRTAGDAL
Sbjct:  168 DILLQGLLALTSAANAGSPQSASASAGQ-VRMRMQFSNKIPIQVEGTGYLGTVQRRKLSPKFQESMESMMQMQEGDSNSNSATSNKLDFFGGRKWVDRGIRYLPESHDDDGDGSRDSASATASSITPEEQELLELEAVLQTESDEIDAAYSTRRLAGIVANSNDGSP----------LTLTPLEDRNPE------NPSNNXXXVDVEHQNQILILDLEAVDRSCDLAEKGD------------------EQALQVLATFVSSRQGSLPARRNALAFLGGTGDIGLTTEHMNVNSSDLVFMAIVSALQHEKSPIMRRTAGDAL 454          
BLAST of mRNA_H-elongata_contig95064.16917.1 vs. uniprot
Match: A0A1E7EQX7_9STRA (Nfu_N domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EQX7_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.750e-12
Identity = 98/342 (28.65%), Postives = 154/342 (45.03%), Query Frame = 1
Query:   13 RFRTQVPAAVEAL--GGPADSLDPA--LLMISALGEDGSSLSKKHSE----MDGITVRLQVSNGIPIQVEACPPGGTPVRRKLSPRFVDAMNDFVRSSGDEMAFFKGRRWLPRGVRY--PED----------------SNC------GAAASAEEALLAV-------VDEVELAYHESRLRGVVADAVQRAPGGGAGSGMAGETGAQAEIKEIQAAAAGLRASTNEDIVAA-VDRLCDLA-GDAPPPSATNSVDRECSTTARDALDALIGFVSSGT-GPVAARRAAVAFVGGVGEAAGATGLD-----------------AVASVFRGDRSPGVRRTAGDAL 861
            ++ + +P  +E+L  G   DS      LL+   L    SS +   ++    M  + +R+Q+SN IPIQ+E     GT  R KL P+F + M +  +   D + FF GR+W+ RG+RY  PED                SN        ++   E+ LL +         EV+ AY   RL  +V+++         G G + +     ++  +          +  D+    VDR C+LA GD        + D    +T  +AL+ L+ FVSS   G +AARR A+A++GG   AA   G+D                 AV+  F+ +++P +RRTAGDA 
Sbjct:  144 KWESVLPLVLESLLEGDDGDSAQQVQELLLPGLLQASSSSSNLNQNDQTTTMGQVRMRIQLSNKIPIQIEGTGSLGTVQRLKLVPKFQEYMEELQQD--DTIDFFAGRKWMDRGIRYYLPEDDGNDKGDDSHETFGNGSNSIDSFTYSSSTEEEKELLGLQFILQTEAKEVDDAYPPQRLARIVSESRLD------GKGRSKDVHPTKKVTPLSVEVESCSPQSPFDLTLEDVDRYCNLADGD------YGNGDINQDSTHLEALNVLVEFVSSSNQGLLAARRNAIAYLGGT--AAAGPGIDNTQTDSTANVMNDRVFHAVSLAFQNEKNPMMRRTAGDAF 469          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95064.16917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L0B8_9PHAE4.650e-8355.41Nfu_N domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S2XB48_9EUKA1.080e-1933.07Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S3YPQ0_9EUKA1.480e-1739.13Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S0H0H6_9EUKA1.320e-1546.60Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S3VDY6_9STRA9.420e-1531.06Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A1E7EQX7_9STRA2.750e-1228.65Nfu_N domain-containing protein n=1 Tax=Fragilario... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95064contigH-elongata_contig95064:1160..2394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionScaffold protein Nfu/NifU, N-terminal
Ec32 orthologEc-16_003800.1
Exons2
Model size867
Cds size867
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931345.584092-CDS-H-elongata_contig95064:1159..13511622931345.584092-CDS-H-elongata_contig95064:1159..1351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95064 1160..1351 +
1691679798.8240638-CDS-H-elongata_contig95064:1159..13511691679798.8240638-CDS-H-elongata_contig95064:1159..1351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95064 1160..1351 +
1622931345.5972548-CDS-H-elongata_contig95064:1719..23941622931345.5972548-CDS-H-elongata_contig95064:1719..2394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95064 1720..2394 +
1691679798.8335288-CDS-H-elongata_contig95064:1719..23941691679798.8335288-CDS-H-elongata_contig95064:1719..2394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95064 1720..2394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95064.16917.1prot_H-elongata_contig95064.16917.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95064 1160..2394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95064.16917.1

>prot_H-elongata_contig95064.16917.1 ID=prot_H-elongata_contig95064.16917.1|Name=mRNA_H-elongata_contig95064.16917.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=289bp
MRPLRFRTQVPAAVEALGGPADSLDPALLMISALGEDGSSLSKKHSEMDG
ITVRLQVSNGIPIQVEACPPGGTPVRRKLSPRFVDAMNDFVRSSGDEMAF
FKGRRWLPRGVRYPEDSNCGAAASAEEALLAVVDEVELAYHESRLRGVVA
DAVQRAPGGGAGSGMAGETGAQAEIKEIQAAAAGLRASTNEDIVAAVDRL
CDLAGDAPPPSATNSVDRECSTTARDALDALIGFVSSGTGPVAARRAAVA
FVGGVGEAAGATGLDAVASVFRGDRSPGVRRTAGDALR*
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mRNA from alignment at H-elongata_contig95064:1160..2394+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95064.16917.1 ID=mRNA_H-elongata_contig95064.16917.1|Name=mRNA_H-elongata_contig95064.16917.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1235bp|location=Sequence derived from alignment at H-elongata_contig95064:1160..2394+ (Himanthalia elongata Himel1 dioecious)
ATGAGACCCTTACGTTTTCGGACGCAGGTTCCAGCCGCTGTGGAAGCGCT AGGGGGCCCGGCGGACTCTCTCGATCCGGCGCTGCTCATGATATCTGCGT TGGGAGAAGACGGGAGCTCGCTTTCGAAGAAGCATTCCGAGATGGACGGG ATCACCGTCCGTCTCCAGGTTTCAAACGGCATACCGATTCAGGTCAGAAC AAACATGATGCGCTTTCCGCCATCGCCGTCACAATATTATGTGCGCAAGC CCTGTACCGTAGCATTTGGCACAACCGAAATCGTGTCGGGGATTTTAAAG CTCGAACCGTTTGACGTGGCTCCTGCGGGTATCAAGGACGTAAAGATGGG ATCAAGTAACGAATAGGACGATCAAACAGGACGATAAAGGCCATCATCAT TAAACCGTGGACGGGCGCACCGAAGCAAGCAGAACGCTTTTGGTTCACGG CCTGACAGTTGCAGCAACATTTGTAGCATCACCACACTATCGAATCGCAT CGTGTTGCCTTTCCATTCGCCTCTCCTGGTTTATCTGGGGTTTGGGGTTT GGGGGAGAAGGTCGAAGCGTGTCCACCGGGAGGCACGCCCGTCCGCCGGA AGCTCTCCCCGCGTTTCGTCGACGCCATGAACGACTTCGTGAGGAGCTCC GGCGACGAGATGGCGTTTTTCAAGGGTCGCCGGTGGCTGCCTCGCGGTGT ACGCTACCCTGAAGACAGCAACTGTGGAGCCGCGGCGTCGGCCGAAGAAG CCCTCTTGGCCGTAGTAGACGAAGTCGAGCTCGCCTACCACGAGTCTAGG TTGCGTGGAGTCGTGGCAGACGCGGTCCAGCGCGCCCCTGGTGGAGGGGC GGGCAGTGGCATGGCGGGAGAGACAGGTGCACAGGCGGAGATCAAGGAGA TTCAGGCAGCGGCGGCGGGATTGCGAGCATCAACGAACGAGGACATTGTG GCGGCGGTAGATCGCCTCTGTGATCTGGCAGGGGATGCGCCCCCCCCTTC CGCGACAAATAGTGTTGACAGAGAATGTTCGACTACCGCTCGCGACGCCT TGGACGCCCTCATTGGATTCGTGAGCTCTGGGACTGGGCCGGTAGCTGCC AGGCGAGCGGCGGTGGCGTTCGTCGGGGGCGTTGGGGAGGCAGCGGGAGC CACAGGCTTGGATGCGGTGGCATCGGTGTTTCGAGGGGATAGGAGTCCTG GGGTTCGACGCACCGCTGGGGACGCCTTGAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig95064:1160..2394+

>mRNA_H-elongata_contig95064.16917.1 ID=mRNA_H-elongata_contig95064.16917.1|Name=mRNA_H-elongata_contig95064.16917.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1734bp|location=Sequence derived from alignment at H-elongata_contig95064:1160..2394+ (Himanthalia elongata Himel1 dioecious)
ATGAGACCCTTACGTTTTCGGACGCAGGTTCCAGCCGCTGTGGAAGCGCT
AGGGGGCCCGGCGGACTCTCTCGATCCGGCGCTGCTCATGATATCTGCGT
TGGGAGAAGACGGGAGCTCGCTTTCGAAGAAGCATTCCGAGATGGACGGG
ATCACCGTCCGTCTCCAGGTTTCAAACGGCATACCGATTCAGATGAGACC
CTTACGTTTTCGGACGCAGGTTCCAGCCGCTGTGGAAGCGCTAGGGGGCC
CGGCGGACTCTCTCGATCCGGCGCTGCTCATGATATCTGCGTTGGGAGAA
GACGGGAGCTCGCTTTCGAAGAAGCATTCCGAGATGGACGGGATCACCGT
CCGTCTCCAGGTTTCAAACGGCATACCGATTCAGGTCGAAGCGTGTCCAC
CGGGAGGCACGCCCGTCCGCCGGAAGCTCTCCCCGCGTTTCGTCGACGCC
ATGAACGACTTCGTGAGGAGCTCCGGCGACGAGATGGCGTTTTTCAAGGG
TCGCCGGTGGCTGCCTCGCGGTGTACGCTACCCTGAAGACAGCAACTGTG
GAGCCGCGGCGTCGGCCGAAGAAGCCCTCTTGGCCGTAGTAGACGAAGTC
GAGCTCGCCTACCACGAGTCTAGGTTGCGTGGAGTCGTGGCAGACGCGGT
CCAGCGCGCCCCTGGTGGAGGGGCGGGCAGTGGCATGGCGGGAGAGACAG
GTGCACAGGCGGAGATCAAGGAGATTCAGGCAGCGGCGGCGGGATTGCGA
GCATCAACGAACGAGGACATTGTGGCGGCGGTAGATCGCCTCTGTGATCT
GGCAGGGGATGCGCCCCCCCCTTCCGCGACAAATAGTGTTGACAGAGAAT
GTTCGACTACCGCTCGCGACGCCTTGGACGCCCTCATTGGATTCGTGAGC
TCTGGGACTGGGCCGGTAGCTGCCAGGCGAGCGGCGGTGGCGTTCGTCGG
GGGCGTTGGGGAGGCAGCGGGAGCCACAGGCTTGGATGCGGTGGCATCGG
TGTTTCGAGGGGATAGGAGTCCTGGGGTTCGACGCACCGCTGGGGACGCC
TTGAGGTAGGTCGAAGCGTGTCCACCGGGAGGCACGCCCGTCCGCCGGAA
GCTCTCCCCGCGTTTCGTCGACGCCATGAACGACTTCGTGAGGAGCTCCG
GCGACGAGATGGCGTTTTTCAAGGGTCGCCGGTGGCTGCCTCGCGGTGTA
CGCTACCCTGAAGACAGCAACTGTGGAGCCGCGGCGTCGGCCGAAGAAGC
CCTCTTGGCCGTAGTAGACGAAGTCGAGCTCGCCTACCACGAGTCTAGGT
TGCGTGGAGTCGTGGCAGACGCGGTCCAGCGCGCCCCTGGTGGAGGGGCG
GGCAGTGGCATGGCGGGAGAGACAGGTGCACAGGCGGAGATCAAGGAGAT
TCAGGCAGCGGCGGCGGGATTGCGAGCATCAACGAACGAGGACATTGTGG
CGGCGGTAGATCGCCTCTGTGATCTGGCAGGGGATGCGCCCCCCCCTTCC
GCGACAAATAGTGTTGACAGAGAATGTTCGACTACCGCTCGCGACGCCTT
GGACGCCCTCATTGGATTCGTGAGCTCTGGGACTGGGCCGGTAGCTGCCA
GGCGAGCGGCGGTGGCGTTCGTCGGGGGCGTTGGGGAGGCAGCGGGAGCC
ACAGGCTTGGATGCGGTGGCATCGGTGTTTCGAGGGGATAGGAGTCCTGG
GGTTCGACGCACCGCTGGGGACGCCTTGAGGTAG
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