mRNA_H-elongata_contig95014.16913.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95014.16913.1
Unique NamemRNA_H-elongata_contig95014.16913.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 5.490e-64
Identity = 114/144 (79.17%), Postives = 120/144 (83.33%), Query Frame = 1 
Query:    1 NFQDFDLDDADGAFARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLT--------EVMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESL 408
            NFQ FDLDD D AFARFKTLK+SQHLTFSGRGAG+TITPYAAGRMIGA+VWRVSWQTEDNDIVYATAYN+  ERHLR SAL TLTRPSVLITDAHN+LT            RK RE  LISTVMDTVRGGGNVL+PTDTAG  L
Sbjct:  236 NFQAFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNNDHERHLRASALGTLTRPSVLITDAHNALTGGGMIRKDPSSKRKLREVELISTVMDTVRGGGNVLLPTDTAGRVL 379
[Close]
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: A0A836CFV8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA)

HSP 1 Score: 163 bits (413), Expect = 4.370e-44
Identity = 84/138 (60.87%), Postives = 100/138 (72.46%), Query Frame = 1 
Query:    4 FQDFDLDDADGAFARFKTLKYSQHLTFS--GRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLT-EVMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESL 408
            F+ F LDDAD AF RF+ LKYSQHL FS  GRGAG+TITPYAAG +IG S+WR+ WQT+DNDIVYA +YNH+ E HL   A+ TL+RPS++ITDAH  LT +    + R   L   V  TVR GGNVL+P DTAG  L
Sbjct:  161 FKAFTLDDADAAFERFQPLKYSQHLRFSEGGRGAGVTITPYAAGHIIGGSLWRICWQTDDNDIVYAVSYNHRREEHLNGGAVETLSRPSIMITDAHQVLTMQPKPPRKRASDLTEMVTATVRKGGNVLLPCDTAGRVL 298
[Close]
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: L8GYA6_ACACA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GYA6_ACACA)

HSP 1 Score: 148 bits (374), Expect = 8.190e-39
Identity = 77/139 (55.40%), Postives = 99/139 (71.22%), Query Frame = 1 
Query:    7 QDFD---LDDADGAF--ARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLTEVMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESL 408
            +DFD   LDD D AF   RF+ LKYSQH+  +GRGAGI +TPY  G MIG +VW+++ +TE+  I+YA  YNHK ERHL P+ L TL RP++LITDA N L+   SR+ R+  L+ T M T++G GNVL+PTDTAG  L
Sbjct:   71 EDFDVWNLDDVDAAFNEERFEQLKYSQHVRLTGRGAGIELTPYVGGHMIGGTVWKITKETEE--ILYAVDYNHKKERHLNPTVLETLNRPTLLITDAFNGLSTQSSRRSRDMDLLDTTMKTLKGDGNVLLPTDTAGRVL 207
[Close]
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: A0A6B2L931_9EUKA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L931_9EUKA)

HSP 1 Score: 141 bits (356), Expect = 2.570e-38
Identity = 71/135 (52.59%), Postives = 93/135 (68.89%), Query Frame = 1 
Query:    4 FQDFDLDDADGAFARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLTEVMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESL 408
            F  F+LDD D AF  F  LKYSQ  T SG+G  + ITPYAAG +IG ++W++  +T++  I+YA  YNHK ERHL P+ L TLT+P++LITDA N+L    SR  R+  LI ++  T+R GGNVL+P DTAG  L
Sbjct:  111 FTVFNLDDVDAAFDNFVQLKYSQRYTLSGKGIKLEITPYAAGHLIGGTIWKIKRETDE--IIYAVDYNHKKERHLSPTILETLTQPTLLITDALNALNSQDSRGNRDSLLIESITSTLRAGGNVLLPVDTAGRVL 243
[Close]
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: B3S6C6_TRIAD (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Trichoplax TaxID=10227 RepID=B3S6C6_TRIAD)

HSP 1 Score: 144 bits (364), Expect = 1.670e-37
Identity = 73/139 (52.52%), Postives = 98/139 (70.50%), Query Frame = 1 
Query:    1 NFQDFDL---DDADGAFARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLTEVMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESL 408
            +++DFDL   DD D AF+R   LKYSQH+  +G+G G+TITPYAAG M+G ++W++    E+ DI+YA  YNHK ERHL  S L TLT PS+LITDA+N+      R+ R+ +LIS V++ +R GGNVL+  DTAG  L
Sbjct:  107 DYEDFDLFSLDDIDDAFSRITALKYSQHVHLTGKGNGLTITPYAAGHMVGGTIWKIIKDGEE-DIIYAVDYNHKKERHLNGSVLETLTHPSLLITDAYNAQYNQAKRRDRDQKLISRVLNALRSGGNVLIAVDTAGRVL 244
[Close]
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: A0A6B2KYM6_9EUKA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KYM6_9EUKA)

HSP 1 Score: 141 bits (356), Expect = 2.110e-36
Identity = 71/135 (52.59%), Postives = 93/135 (68.89%), Query Frame = 1 
Query:    4 FQDFDLDDADGAFARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLTEVMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESL 408
            F  F+LDD D AF  F  LKYSQ  T SG+G  + ITPYAAG +IG ++W++  +T++  I+YA  YNHK ERHL P+ L TLT+P++LITDA N+L    SR  R+  LI ++  T+R GGNVL+P DTAG  L
Sbjct:  111 FTVFNLDDVDAAFDNFVQLKYSQRYTLSGKGIKLEITPYAAGHLIGGTIWKIKRETDE--IIYAVDYNHKKERHLSPTILETLTQPTLLITDALNALNSQDSRGNRDSLLIESITSTLRAGGNVLLPVDTAGRVL 243
[Close]
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: A0A6U9RRA8_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A6U9RRA8_9CHLO)

HSP 1 Score: 140 bits (354), Expect = 3.780e-36
Identity = 67/131 (51.15%), Postives = 93/131 (70.99%), Query Frame = 1 
Query:    4 FQDFDLDDADGAFARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLTEVMSRKYREGRLISTVMDTVRGGGNVLMPTDTA 396
            ++ F+L+D D AF  F  ++Y+Q +  +G+G GITITP+ AG  +G + WR++ + ED  I+YA  YNH+ ERHL  +AL T  RP+VLITDA+N LTE  SRK R+  L++ VM T+R GGNVL+P DTA
Sbjct:  122 YETFNLNDVDRAFGMFNPMRYAQQINLTGKGEGITITPFPAGHSVGGTTWRITKEAED--ILYAVDYNHRKERHLNGAALHTFNRPAVLITDAYNGLTEQTSRKLRDRTLVAGVMQTLRSGGNVLIPVDTA 250
[Close]
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: A0A7D9DXS7_PARCT (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Alcyonacea TaxID=40677 RepID=A0A7D9DXS7_PARCT)

HSP 1 Score: 140 bits (352), Expect = 7.430e-36
Identity = 71/139 (51.08%), Postives = 97/139 (69.78%), Query Frame = 1 
Query:    1 NFQDFDL---DDADGAFARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLTEVMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESL 408
            N++DF+L   DD D AF +   LKYSQH++  G+G G+TITPYAAG MIG ++W++    E+ DI+YA  YNHK ERHL  + L TL+RPS+LITD++N L     R+ R+ +L+S ++ T R GGNVL+  DTAG  L
Sbjct:  107 NYEDFELFSLDDVDAAFDKIIQLKYSQHVSLKGKGHGLTITPYAAGHMIGGTMWKIVKDGEE-DIIYAVDYNHKKERHLNGAVLETLSRPSLLITDSYNVLNMQARRRDRDTQLMSQILKTTRRGGNVLLTVDTAGRIL 244
[Close]
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: UPI001F043033 (cleavage and polyadenylation specificity factor subunit 2-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F043033)

HSP 1 Score: 139 bits (351), Expect = 1.020e-35
Identity = 72/139 (51.80%), Postives = 95/139 (68.35%), Query Frame = 1 
Query:    1 NFQDFDL---DDADGAFARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLTEVMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESL 408
            N++DF+L   DD D AF     LKYSQH+   G+G G+TITPYAAG MIG ++W++    E+ DIVYA  YNHK ERHL  + L TL+RPS+LITD++N L     R+ R+ +L+S ++ T R GGNVL+  DTAG  L
Sbjct:  107 NYEDFELFSLDDVDAAFENIVQLKYSQHVNLKGKGHGLTITPYAAGHMIGGTMWKIVKDGEE-DIVYAVDYNHKKERHLNGAVLETLSRPSLLITDSYNVLNMQARRRDRDTQLMSQILKTTRRGGNVLLAIDTAGRVL 244
[Close]
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Match: A0A2R6XNT6_MARPO (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XNT6_MARPO)

HSP 1 Score: 139 bits (349), Expect = 1.880e-35
Identity = 68/136 (50.00%), Postives = 91/136 (66.91%), Query Frame = 1 
Query:    1 NFQDFDLDDADGAFARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASVWRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLTEVMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESL 408
            NF  F+LDD D AF     LKYSQH    G+G GITITPYAAGR++G +VW+++  TED  I+YA  +NH+ ERHL  + L +  RP+VLITD++N+L     +K R+   +  VM  +R GGNVL+P +TAG  L
Sbjct:  127 NFDLFNLDDVDTAFGNSVQLKYSQHHLLQGKGEGITITPYAAGRLLGGTVWKITVDTED--IIYAVDFNHRKERHLNGTVLQSFVRPAVLITDSYNALNNQPLQKQRDAEFLDVVMKALRAGGNVLLPVETAGRVL 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95014.16913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQA4_ECTSI5.490e-6479.17Cleavage and polyadenylation specificity factor su... [more]
A0A836CFV8_9STRA4.370e-4460.87Cleavage and polyadenylation specificity factor su... [more]
L8GYA6_ACACA8.190e-3955.40Cleavage and polyadenylation specificity factor su... [more]
A0A6B2L931_9EUKA2.570e-3852.59Cleavage and polyadenylation specificity factor su... [more]
B3S6C6_TRIAD1.670e-3752.52Cleavage and polyadenylation specificity factor su... [more]
A0A6B2KYM6_9EUKA2.110e-3652.59Cleavage and polyadenylation specificity factor su... [more]
A0A6U9RRA8_9CHLO3.780e-3651.15Cleavage and polyadenylation specificity factor su... [more]
A0A7D9DXS7_PARCT7.430e-3651.08Cleavage and polyadenylation specificity factor su... [more]
UPI001F0430331.020e-3551.80cleavage and polyadenylation specificity factor su... [more]
A0A2R6XNT6_MARPO1.880e-3550.00Cleavage and polyadenylation specificity factor su... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95014contigH-elongata_contig95014:32..1757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.7
Seed ortholog evalue4.3e-55
Seed eggNOG ortholog2880.D7FQA4
Preferred nameCPSF2
KEGG koko:K14402,ko:K17606
KEGG Pathwayko03015,ko04136,ko04138,ko04140,map03015,map04136,map04138,map04140
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005847,GO:0005849,GO:0005911,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006398,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0031047,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0040029,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG1236@1,KOG1135@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03019
Hectar predicted targeting categoryother localisation
Exons3
Model size420
Cds size420
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95014.16913.1prot_H-elongata_contig95014.16913.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95014 32..1757 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931345.1953082-CDS-H-elongata_contig95014:31..1181622931345.1953082-CDS-H-elongata_contig95014:31..118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95014 32..118 +
1691679798.6636672-CDS-H-elongata_contig95014:31..1181691679798.6636672-CDS-H-elongata_contig95014:31..118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95014 32..118 +
1622931345.2105935-CDS-H-elongata_contig95014:1189..13231622931345.2105935-CDS-H-elongata_contig95014:1189..1323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95014 1190..1323 +
1691679798.6767106-CDS-H-elongata_contig95014:1189..13231691679798.6767106-CDS-H-elongata_contig95014:1189..1323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95014 1190..1323 +
1622931345.2247298-CDS-H-elongata_contig95014:1558..17571622931345.2247298-CDS-H-elongata_contig95014:1558..1757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95014 1559..1757 +
1691679798.6866505-CDS-H-elongata_contig95014:1558..17571691679798.6866505-CDS-H-elongata_contig95014:1558..1757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95014 1559..1757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95014.16913.1

>prot_H-elongata_contig95014.16913.1 ID=prot_H-elongata_contig95014.16913.1|Name=mRNA_H-elongata_contig95014.16913.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
NFQDFDLDDADGAFARFKTLKYSQHLTFSGRGAGITITPYAAGRMIGASV
WRVSWQTEDNDIVYATAYNHKTERHLRPSALSTLTRPSVLITDAHNSLTE
VMSRKYREGRLISTVMDTVRGGGNVLMPTDTAGESLSSP*
back to top

mRNA from alignment at H-elongata_contig95014:32..1757+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95014.16913.1 ID=mRNA_H-elongata_contig95014.16913.1|Name=mRNA_H-elongata_contig95014.16913.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1726bp|location=Sequence derived from alignment at H-elongata_contig95014:32..1757+ (Himanthalia elongata Himel1 dioecious)
AACTTCCAGGATTTCGACCTAGACGACGCGGACGGCGCTTTCGCCCGGTT
CAAGACGCTCAAGTACTCGCAGCACCTCACATTTTCGGTGCGCCCTTCCC
ATACTAATAATACACAATGATACTATTAATACACAATGATACTATTAATA
CACAATTATACTAATAATACATAATGATACTACTAATACACAATGATACT
ACTAATACACAATGATACTATTAATACACAATGATACTATTAATACACAA
TGATACTATTAATACTACGTTAGAGACAGTAATAATACACGATGACATGC
TATCATAGCAACCATAAACCGGTACCTGGTACTATACTATACTAGATACC
CAACGAGCTGAGATACCCAATGACCTAGGTATACAGTGAGATTTTACGCG
CGATGGGATTATAGATTAATAGAGGAGAAAACACGCTATAATTAGTAATT
AGAGGCGCAATGAGGTGCACACGCCCTTTTAAAACACAAGAGACCGCATC
GAATCGCTAGCCGACTCGCGTCATTGATGCGATCCTACCCACCTTTTGGC
GCTTTTTTGTGCTTTTGGTATTGCACTGTTCGATAGTATAGTGAAGTAGA
CTGGGCTGTAGTGTAGTTTAGTCTAGTGTTTAGTGTAATATTAAGTATAG
GGTTAAGTGGGGTGATTACGAGGAGAGGAGGAGGAGGAAAAGAGAACGCC
ATCCGTCTCGTTGTAGCTTCCCTTCCCTTGGTGTCAAACGACGCTCACTC
CACCGTCGACACGATCGCGTCTCACGAACGTACACACGCACGTGACATGA
CGTCATCCCACTTGCCGCACACGCCATACACTATGCAGTTAGATGCAATA
AAATGCAATAAAAGTATAGTGTATGGTGTGCACCAAGTCTATAAAGCAGG
GTTGGTACGAAGTGCACGCTCTACCTGGTATAATTAATTTTGTTGTTTAA
TAGTATATCAGGTATGTGTTATCTATCTCTCTTTTGTTAATCATGGTATA
CCACGGGTACCCTCCGAACACCACGGTCACGGCTCTCTTTTGCACCAGAA
GGGGTTTGAGTGTGTTCATTACCTATGAGCACAAAATCATAACATGTTAT
AGCCATTACTTTTGTCTTCGTTTGGTATATTCTTTGTGATGGGTGCTGGT
GCTGACAGGGTCGCGGGGCGGGAATAACTATCACTCCGTACGCGGCGGGG
CGAATGATTGGAGCCTCCGTGTGGCGAGTCTCGTGGCAGACGGAAGACAA
CGACATCGTGTACGCGACCGCCTACAACCACAAGACCGAACGGTGAGGAA
TGTTGACAGAGCCCCGTGTCCTCAGGCAGGAGGCCACCCGCTGGTGGCCA
ACCAGGCGCACGGCTAATGCGGCATTGAATATTCTCAGAAAGAAAGGACG
GGGTCAGGGCCTAGAGCCATCCTTTCTGTTTCCTGTACACGCCCGCCGAC
CGGGTGTCAGCGTGAAGCGGGACCGGGGTGACTCACGATCGTCCCTGTCC
GCCCCCTTTGTTGACGTTTCTCGAAAGACATCTCCGGCCTTCGGCACTGA
GCACCCTGACTCGGCCGAGTGTGCTCATCACCGACGCCCACAACTCGCTC
ACGGAGGTGATGAGCCGCAAGTATCGAGAGGGTCGGCTGATCTCTACGGT
GATGGACACGGTGCGGGGAGGAGGCAACGTCCTCATGCCCACGGACACCG
CTGGTGAGTCGCTTTCATCCCCCTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig95014:32..1757+

>mRNA_H-elongata_contig95014.16913.1 ID=mRNA_H-elongata_contig95014.16913.1|Name=mRNA_H-elongata_contig95014.16913.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig95014:32..1757+ (Himanthalia elongata Himel1 dioecious)
AACTTCCAGGATTTCGACCTAGACGACGCGGACGGCGCTTTCGCCCGGTT
CAAGACGCTCAAGTACTCGCAGCACCTCACATTTTCGAACTTCCAGGATT
TCGACCTAGACGACGCGGACGGCGCTTTCGCCCGGTTCAAGACGCTCAAG
TACTCGCAGCACCTCACATTTTCGGGTCGCGGGGCGGGAATAACTATCAC
TCCGTACGCGGCGGGGCGAATGATTGGAGCCTCCGTGTGGCGAGTCTCGT
GGCAGACGGAAGACAACGACATCGTGTACGCGACCGCCTACAACCACAAG
ACCGAACGGGTCGCGGGGCGGGAATAACTATCACTCCGTACGCGGCGGGG
CGAATGATTGGAGCCTCCGTGTGGCGAGTCTCGTGGCAGACGGAAGACAA
CGACATCGTGTACGCGACCGCCTACAACCACAAGACCGAACGACATCTCC
GGCCTTCGGCACTGAGCACCCTGACTCGGCCGAGTGTGCTCATCACCGAC
GCCCACAACTCGCTCACGGAGGTGATGAGCCGCAAGTATCGAGAGGGTCG
GCTGATCTCTACGGTGATGGACACGGTGCGGGGAGGAGGCAACGTCCTCA
TGCCCACGGACACCGCTGGTGAGTCGCTTTCATCCCCCTGAACATCTCCG
GCCTTCGGCACTGAGCACCCTGACTCGGCCGAGTGTGCTCATCACCGACG
CCCACAACTCGCTCACGGAGGTGATGAGCCGCAAGTATCGAGAGGGTCGG
CTGATCTCTACGGTGATGGACACGGTGCGGGGAGGAGGCAACGTCCTCAT
GCCCACGGACACCGCTGGTGAGTCGCTTTCATCCCCCTGA
back to top