mRNA_H-elongata_contig94999.16911.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig94999.16911.1 vs. uniprot
Match: UPI00160338C2 (hydrogenase maturation factor HoxX-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI00160338C2) HSP 1 Score: 152 bits (383), Expect = 3.040e-43 Identity = 85/168 (50.60%), Postives = 105/168 (62.50%), Query Frame = 1
Query: 1 MRILFLTNAPNGMSQALYLNLTEQGHQVKLHVARSEEDMLAAHDAFHPDAIVAPFLTKRVPERLWKNNATCPVLIVHPGVRGDRGVSSIDWVLKGRSLPEWGVTVLQADKEMDAGDVWESNNFSVPQSSTLSKSAFYNKARYRNAAIAGVKAALANLQRGVPPRPLDY 504
++I FL N NG+SQ LYL L +GH V +H E+M A + PD ++ PFLT+RVP L+ NN PVLIVHPG+ GDRG SSIDW LK EWGVTVLQAD EMDAGD+W + F + + +T KS+ Y K AA+ V AL +R PP PLDY
Sbjct: 6 LKITFLCNGFNGLSQRLYLELVSRGHHVTVHEDPRGEEMTRAVETDQPDLVLCPFLTRRVPPGLY-NNPARPVLIVHPGIPGDRGPSSIDWALK-EGATEWGVTVLQADDEMDAGDIWATCKFPLNRQAT--KSSLYGK-EVTQAALLAVLHALVAFERDAPPTPLDY 168
BLAST of mRNA_H-elongata_contig94999.16911.1 vs. uniprot
Match: UPI001600B377 (hydrogenase maturation factor HoxX-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001600B377) HSP 1 Score: 150 bits (378), Expect = 5.050e-42 Identity = 83/167 (49.70%), Postives = 106/167 (63.47%), Query Frame = 1
Query: 4 RILFLTNAPNGMSQALYLNLTEQGHQVKLHVARSEEDMLAAHDAFHPDAIVAPFLTKRVPERLWKNNATCPVLIVHPGVRGDRGVSSIDWVLKGRSLPEWGVTVLQADKEMDAGDVWESNNFSVPQSSTLSKSAFYNKARYRNAAIAGVKAALANLQRGVPPRPLDY 504
+I FL N+ NG+SQ LYL L +GH V +H E+M A +A PD ++ PF T+RVP L+ NN P LIVHPG+ GDRG SSIDW LK EWGVTVLQAD EMD+GD+W + F V + +T KS+ Y+K AA+ V A+ ++ VPP PLDY
Sbjct: 94 KITFLCNSFNGLSQRLYLELLSRGHHVTVHEDPRGEEMTRAVEADQPDLVLCPFQTRRVPAELY-NNPARPALIVHPGIPGDRGPSSIDWALK-EGTTEWGVTVLQADDEMDSGDIWATCKFPVNRQAT--KSSLYSK-EVTQAAVVSVLKAIEAWEQSVPPTPLDY 255
BLAST of mRNA_H-elongata_contig94999.16911.1 vs. uniprot
Match: A0A6P4ZTK3_BRABE (uncharacterized protein LOC109482000 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZTK3_BRABE) HSP 1 Score: 156 bits (394), Expect = 2.140e-41 Identity = 88/167 (52.69%), Postives = 110/167 (65.87%), Query Frame = 1
Query: 4 RILFLTNAPNGMSQALYLNLTEQGHQVKLHVARSEEDMLAAHDAFHPDAIVAPFLTKRVPERLWKNNATCPVLIVHPGVRGDRGVSSIDWVLKGRSLPEWGVTVLQADKEMDAGDVWESNNFSVPQSSTLSKSAFYNKARYRNAAIAGVKAALANLQRGVPPRPLDY 504
+I FL N+ NG+SQ LYL L +GH V +H E+M A +A PD ++ PFLT+RVP L+ NN PVLIVHPG+ GDRG SSIDW LK EWGVTVLQA EMDAGD+W + F V + +T KS+ Y K + AA+A V+ AL L++G PP PLDY
Sbjct: 87 KITFLCNSFNGLSQRLYLELVSRGHHVTVHENPRGEEMTKAAEADKPDLVLCPFLTRRVPPSLY-NNPARPVLIVHPGIPGDRGPSSIDWALK-EGATEWGVTVLQAADEMDAGDIWAACKFPVNRQAT--KSSLYGKEVTKAAALA-VQGALEALEQGTPPTPLDY 248
BLAST of mRNA_H-elongata_contig94999.16911.1 vs. uniprot
Match: C3ZFJ1_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZFJ1_BRAFL) HSP 1 Score: 155 bits (392), Expect = 3.020e-41 Identity = 86/167 (51.50%), Postives = 108/167 (64.67%), Query Frame = 1
Query: 4 RILFLTNAPNGMSQALYLNLTEQGHQVKLHVARSEEDMLAAHDAFHPDAIVAPFLTKRVPERLWKNNATCPVLIVHPGVRGDRGVSSIDWVLKGRSLPEWGVTVLQADKEMDAGDVWESNNFSVPQSSTLSKSAFYNKARYRNAAIAGVKAALANLQRGVPPRPLDY 504
+I FL N+ NG+SQ LYL L +GH V +H E+M A +A PD ++ PF T+RVP L+ NN PVLIVHPG+ GDRG SSIDW LK EWGVTVLQAD EMDAGD+W + F V + +T KS+ Y+K AA+ V A+ ++GVPP PLDY
Sbjct: 88 KITFLCNSFNGLSQRLYLELVSRGHHVTVHEDPRGEEMTRAVEADQPDLVLCPFQTRRVPAELY-NNPARPVLIVHPGIPGDRGPSSIDWALK-EGASEWGVTVLQADDEMDAGDIWATCKFPVNRQAT--KSSLYSK-EVTQAAVVSVLKAIEAWEQGVPPTPLDY 249
BLAST of mRNA_H-elongata_contig94999.16911.1 vs. uniprot
Match: A0A2E3SNW9_9BACT (Hydrogenase maturation protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A2E3SNW9_9BACT) HSP 1 Score: 154 bits (388), Expect = 4.720e-41 Identity = 80/168 (47.62%), Postives = 107/168 (63.69%), Query Frame = 1
Query: 1 MRILFLTNAPNGMSQALYLNLTEQGHQVKLHVARSEEDMLAAHDAFHPDAIVAPFLTKRVPERLWKNNATCPVLIVHPGVRGDRGVSSIDWVLKGRSLPEWGVTVLQADKEMDAGDVWESNNFSVPQSSTLSKSAFYNKARYRNAAIAGVKAALANLQRGVPPRPLDY 504
MRILF+T A NG+SQ + L E GH+V +H+ SEE M+ D PD I+APFL +P +W+N V IVHPG++GDRG SS+DW + + EWGVTVLQAD+EMDAGD+W S+NF Q +SKS Y N+A+ + A+ ++GV P PL+Y
Sbjct: 1 MRILFITTAHNGLSQRASIELGELGHKVDIHITESEEKMIKIVDHHKPDLILAPFLKMAIPRSIWQNYT---VFIVHPGIKGDRGPSSLDWAIM-KEEKEWGVTVLQADEEMDAGDIWSSHNF---QMRPISKSCLYRH-EVTNSAMIAIHEAIQKFEKGVKPEPLNY 160
BLAST of mRNA_H-elongata_contig94999.16911.1 vs. uniprot
Match: A0A8J9ZBU4_BRALA (ALDH1L2 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZBU4_BRALA) HSP 1 Score: 154 bits (389), Expect = 1.070e-40 Identity = 86/167 (51.50%), Postives = 109/167 (65.27%), Query Frame = 1
Query: 4 RILFLTNAPNGMSQALYLNLTEQGHQVKLHVARSEEDMLAAHDAFHPDAIVAPFLTKRVPERLWKNNATCPVLIVHPGVRGDRGVSSIDWVLKGRSLPEWGVTVLQADKEMDAGDVWESNNFSVPQSSTLSKSAFYNKARYRNAAIAGVKAALANLQRGVPPRPLDY 504
+I FL ++ NG+SQ LYL LT +GH V +H E+M A +A PD ++ PF T+RVP L+ NN PVLIVHPG+ GDRG SSIDW LKG + EWGVTVLQAD EMDAGD+W + F P + +KS+ Y+K AA+ V A+ +GVPP PLDY
Sbjct: 98 KITFLCDSFNGLSQRLYLELTSRGHHVTVHEDARGEEMTRAVEADRPDLVLCPFQTRRVPAGLY-NNPARPVLIVHPGIPGDRGPSSIDWALKGGAT-EWGVTVLQADDEMDAGDIWATCKF--PVNRKAAKSSLYSK-EVTQAAVLSVLKAIDAWDQGVPPTPLDY 259
BLAST of mRNA_H-elongata_contig94999.16911.1 vs. uniprot
Match: A0A2G2K3H6_9FLAO (Hydrogenase maturation protein n=1 Tax=Kordia sp. TaxID=1965332 RepID=A0A2G2K3H6_9FLAO) HSP 1 Score: 150 bits (380), Expect = 8.470e-40 Identity = 82/169 (48.52%), Postives = 114/169 (67.46%), Query Frame = 1
Query: 1 MRILFLTNAPNGMSQALYLNLTEQGHQVKLHVARSEEDMLAAHDAFHPDAIVAPFLTKRVPERLWKNNATCPVLIVHPGVRGDRGVSSIDWVLKGRSLPEWGVTVLQADKEMDAGDVWESNNFSVPQSSTLSKSAFYNKARYRNAAIAGVKAALANLQ-RGVPPRPLDY 504
M+ILF+T++ NG+SQ + L+ +GH V++ +A S E M++A AF PD I+APFL K +P+ +WK+ TC LIVHPG++GDRG SS+DW + + EWGVTVLQAD+EMDAGD+W SNNF + ++SKS Y AA+ G+ A+A Q + P LDY
Sbjct: 1 MKILFITSSHNGLSQRAWAELSAKGHVVEIQLATSNEAMISAVSAFKPDLILAPFLKKAIPDSIWKST-TC--LIVHPGIKGDRGPSSLDWAVMSQKT-EWGVTVLQADEEMDAGDIWSSNNFEMR---SISKSNLYRH-EVTQAALVGILDAVAKFQSKTFCPEKLDY 161
BLAST of mRNA_H-elongata_contig94999.16911.1 vs. uniprot
Match: A0A8J9ZDQ7_BRALA (ALDH1L2 protein n=5 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZDQ7_BRALA) HSP 1 Score: 150 bits (378), Expect = 3.490e-39 Identity = 86/178 (48.31%), Postives = 108/178 (60.67%), Query Frame = 1
Query: 1 MRILFLTNAPNGMSQALYLNLTEQGHQVKLHVARSEEDMLAAHDAFHPDAIVAPFLTKRVPERLWKNNATC----------PVLIVHPGVRGDRGVSSIDWVLKGRSLPEWGVTVLQADKEMDAGDVWESNNFSVPQSSTLSKSAFYNKARYRNAAIAGVKAALANLQRGVPPRPLDY 504
+++ FL N NG+SQ LYL LT +GH V +H E+M A +A PD ++ PFLT+RVP L+ N A PVLIVHPG+ GDRG SSIDW LK EWGVTVLQAD EMDAGD+W + F V + +T KS+ Y K AA+ V A+ +RGVPP L+Y
Sbjct: 77 LKVTFLCNGFNGLSQRLYLELTSRGHHVTVHEDARGEEMTRAVEADRPDLVLCPFLTRRVPPGLYNNPARXXXXXXXXXAPPVLIVHPGIPGDRGPSSIDWALK-EGATEWGVTVLQADDEMDAGDIWATCKFPVNRQAT--KSSLYGK-EVAQAALQAVLGAVEAWERGVPPTALNY 250
BLAST of mRNA_H-elongata_contig94999.16911.1 vs. uniprot
Match: A0A0D3L9V0_9BACT (Formyl transferase domain-containing protein n=1 Tax=Flammeovirgaceae bacterium 311 TaxID=1257021 RepID=A0A0D3L9V0_9BACT) HSP 1 Score: 148 bits (374), Expect = 6.270e-39 Identity = 80/169 (47.34%), Postives = 109/169 (64.50%), Query Frame = 1
Query: 1 MRILFLTNAPNGMSQALYLNLTEQGHQVKLHVARSEEDMLAAHDAFHPDAIVAPFLTKRVPERLWKNNATCPVLIVHPGVRGDRGVSSIDWVLKGRSLPEWGVTVLQADKEMDAGDVWESNNFSVPQSSTLSKSAFYNKARYRNAAIAGVKAALANLQRGV-PPRPLDY 504
M+ILF+T + NG+SQ Y+ L+E GHQ+ L +A S+ M AA + P+ I+APFL +P +WK PVLIVHPG+RGDRG SS+DW + EWGVT+LQA +EMDAGD+W S+NF + + +SKS+ Y AA+ G+ A+A + G P PLDY
Sbjct: 1 MKILFITTSHNGLSQRAYVELSELGHQINLQLATSDTAMEAAVRQYKPELIIAPFLKTAIPPSIWKK---VPVLIVHPGIRGDRGPSSLDWAIM-EEWEEWGVTILQAAEEMDAGDIWASHNFKMRE---VSKSSLYRH-EVTQAAMLGLLEAVAKFESGTFTPEPLDY 161
BLAST of mRNA_H-elongata_contig94999.16911.1 vs. uniprot
Match: A0A8K0AAT0_BRALA (ALDH1L1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0AAT0_BRALA) HSP 1 Score: 145 bits (366), Expect = 1.360e-38 Identity = 83/167 (49.70%), Postives = 103/167 (61.68%), Query Frame = 1
Query: 4 RILFLTNAPNGMSQALYLNLTEQGHQVKLHVARSEEDMLAAHDAFHPDAIVAPFLTKRVPERLWKNNATCPVLIVHPGVRGDRGVSSIDWVLKGRSLPEWGVTVLQADKEMDAGDVWESNNFSVPQSSTLSKSAFYNKARYRNAAIAGVKAALANLQRGVPPRPLDY 504
+I FL N+ NG+SQ LYL L +GH V +H E M + PD +V PFLT+RVP L+ NN PVLIVHPG+ GD G SSIDW LK EWGVTVLQA + MDAGD+W + F V + +T KS+ Y K AA+ V A+ ++GVPP PLDY
Sbjct: 123 KITFLCNSFNGLSQRLYLELVSRGHHVMVHDNPRGEKMTQVVEVDQPDIVVCPFLTRRVPASLY-NNPARPVLIVHPGIPGDEGPSSIDWALK-EGATEWGVTVLQAAETMDAGDIWATCKFPVNRQAT--KSSLYGK-EVTQAAVLTVLKAIDAWEQGVPPTPLDY 284 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94999.16911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig94999.16911.1 >prot_H-elongata_contig94999.16911.1 ID=prot_H-elongata_contig94999.16911.1|Name=mRNA_H-elongata_contig94999.16911.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp MRILFLTNAPNGMSQALYLNLTEQGHQVKLHVARSEEDMLAAHDAFHPDAback to top mRNA from alignment at H-elongata_contig94999:1033..2374+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig94999.16911.1 ID=mRNA_H-elongata_contig94999.16911.1|Name=mRNA_H-elongata_contig94999.16911.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1342bp|location=Sequence derived from alignment at H-elongata_contig94999:1033..2374+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig94999:1033..2374+ >mRNA_H-elongata_contig94999.16911.1 ID=mRNA_H-elongata_contig94999.16911.1|Name=mRNA_H-elongata_contig94999.16911.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig94999:1033..2374+ (Himanthalia elongata Himel1 dioecious)back to top |