mRNA_H-elongata_contig94990.16909.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94990.16909.1
Unique NamemRNA_H-elongata_contig94990.16909.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94990.16909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94990contigH-elongata_contig94990:1390..1675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size271
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94990.16909.1prot_H-elongata_contig94990.16909.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94990 1390..1647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931344.8929715-CDS-H-elongata_contig94990:1389..15341622931344.8929715-CDS-H-elongata_contig94990:1389..1534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94990 1390..1534 -
1691679798.5386746-CDS-H-elongata_contig94990:1389..15341691679798.5386746-CDS-H-elongata_contig94990:1389..1534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94990 1390..1534 -
1622931344.9064791-CDS-H-elongata_contig94990:1549..16471622931344.9064791-CDS-H-elongata_contig94990:1549..1647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94990 1550..1647 -
1691679798.5485208-CDS-H-elongata_contig94990:1549..16471691679798.5485208-CDS-H-elongata_contig94990:1549..1647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94990 1550..1647 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931344.9198306-UTR-H-elongata_contig94990:1647..16751622931344.9198306-UTR-H-elongata_contig94990:1647..1675Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94990 1648..1675 -
1691679798.5585167-UTR-H-elongata_contig94990:1647..16751691679798.5585167-UTR-H-elongata_contig94990:1647..1675Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94990 1648..1675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94990.16909.1

>prot_H-elongata_contig94990.16909.1 ID=prot_H-elongata_contig94990.16909.1|Name=mRNA_H-elongata_contig94990.16909.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MHRLTQGGTTEPVSRDQILRCERGQRKISFPVQRQPNPVDTLRNMMTNNN
NNNSTMLMLLLVTHLPKDRGKASSAIIIVG*
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mRNA from alignment at H-elongata_contig94990:1390..1675-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94990.16909.1 ID=mRNA_H-elongata_contig94990.16909.1|Name=mRNA_H-elongata_contig94990.16909.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=286bp|location=Sequence derived from alignment at H-elongata_contig94990:1390..1675- (Himanthalia elongata Himel1 dioecious)
AGCACCAGATTCAGCCTGGATTGAGAGAATGCACAGGCTGACGCAGGGCG
GGACTACTGAACCCGTCTCGCGAGACCAAATTCTTAGGTGCGAACGGGGA
CAGAGGAAAATTAGTTTCCCTGTTCAGCTGACCACGAGCAGAAGGCAACC
AAATCCGGTTGATACTCTTCGAAATATGATGACAAACAACAACAACAACA
ACTCTACCATGTTGATGTTGTTGCTGGTCACACATTTACCAAAAGACCGG
GGGAAAGCAAGTTCGGCCATTATTATTGTTGGTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig94990:1390..1675-

>mRNA_H-elongata_contig94990.16909.1 ID=mRNA_H-elongata_contig94990.16909.1|Name=mRNA_H-elongata_contig94990.16909.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig94990:1390..1675- (Himanthalia elongata Himel1 dioecious)
ATGCACAGGCTGACGCAGGGCGGGACTACTGAACCCGTCTCGCGAGACCA
AATTCTTAGGTGCGAACGGGGACAGAGGAAAATTAGTTTCCCTGTTCAAT
GCACAGGCTGACGCAGGGCGGGACTACTGAACCCGTCTCGCGAGACCAAA
TTCTTAGGTGCGAACGGGGACAGAGGAAAATTAGTTTCCCTGTTCAAAGG
CAACCAAATCCGGTTGATACTCTTCGAAATATGATGACAAACAACAACAA
CAACAACTCTACCATGTTGATGTTGTTGCTGGTCACACATTTACCAAAAG
ACCGGGGGAAAGCAAGTTCGGCCATTATTATTGTTGGTTAAAAGGCAACC
AAATCCGGTTGATACTCTTCGAAATATGATGACAAACAACAACAACAACA
ACTCTACCATGTTGATGTTGTTGCTGGTCACACATTTACCAAAAGACCGG
GGGAAAGCAAGTTCGGCCATTATTATTGTTGGTTAA
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