mRNA_H-elongata_contig94950.16906.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94950.16906.1
Unique NamemRNA_H-elongata_contig94950.16906.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: A0A6H5KP12_9PHAE (Spb1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP12_9PHAE)

HSP 1 Score: 382 bits (980), Expect = 1.120e-128
Identity = 208/258 (80.62%), Postives = 227/258 (87.98%), Query Frame = 1
Query:    1 MTEDGIADDDLQIVSGERELENLDPKERAKIEKKRGLIRAGMGISAPEEPEKNGFE-----------------PRFAVEGLAVADEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVAGKGPTGAKKKGAKIKMVDARM 723
            M EDGIADDDLQ+VSGER+LENLDPKER K+EKKRGLIRAGMG +A ++ E  GFE                 P+FAV+GL V D+REYGSD+EPYDDEDRA+QLAL TMMLRKHRAKEM+DAAYNRFSWNDD DLPDWFVDDEKRH+RPQVPLPPAL+EQMKNKFMSLATKPIKKVAEARARKRKRA+QRL +AKKKATA+AANP+MSEREKLKAVQQAMKKGAK DIPSKVYVVAGKGP+G KKKGAKIKMVDARM
Sbjct:  209 MGEDGIADDDLQVVSGERDLENLDPKERVKLEKKRGLIRAGMGAAA-DDAEDAGFEVAKASGAAMAMLGKRYKPKFAVDGLDVEDDREYGSDQEPYDDEDRARQLALGTMMLRKHRAKEMVDAAYNRFSWNDDADLPDWFVDDEKRHYRPQVPLPPALVEQMKNKFMSLATKPIKKVAEARARKRKRAAQRLVNAKKKATALAANPDMSEREKLKAVQQAMKKGAKQDIPSKVYVVAGKGPSGTKKKGAKIKMVDARM 465          
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: D7FSF8_ECTSI (Putative rRNA methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF8_ECTSI)

HSP 1 Score: 369 bits (948), Expect = 3.210e-118
Identity = 200/250 (80.00%), Postives = 220/250 (88.00%), Query Frame = 1
Query:    1 MTEDGIADDDLQIVSGERELENLDPKERAKIEKKRGLIRAGMGISAPEEPEKNGFE-----------------PRFAVEGLAVADEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVAGKGPTGAKKKGAK 699
            M EDGIADDDLQ+VSGER+LENLDPKER K+EKKRGLIRAGMG +A +E E  GFE                 P+FAV+GL V D+R+YGSD+EPYDDEDRA+QLAL TMMLRKHRAKEM+DAAYNRFSWNDD DLPDWFVDDEKRH+RPQVPLPPAL+EQMKNKFMSLATKPIKKVAEARARKRKRA+QRL++AKKKATA+AANP+MSEREKLKAVQQAMKKGAK DIPSKVYVVAGKGP+G KKKGAK
Sbjct:  716 MGEDGIADDDLQVVSGERDLENLDPKERVKLEKKRGLIRAGMGAAA-DEAEDTGFEVAKASGAAMAMLGKRYKPKFAVDGLDVEDDRDYGSDQEPYDDEDRARQLALGTMMLRKHRAKEMVDAAYNRFSWNDDADLPDWFVDDEKRHYRPQVPLPPALVEQMKNKFMSLATKPIKKVAEARARKRKRAAQRLTNAKKKATALAANPDMSEREKLKAVQQAMKKGAKQDIPSKVYVVAGKGPSGTKKKGAK 964          
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: A0A835Z2H0_9STRA (Putative rRNA methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2H0_9STRA)

HSP 1 Score: 238 bits (607), Expect = 3.210e-69
Identity = 144/258 (55.81%), Postives = 185/258 (71.71%), Query Frame = 1
Query:   28 DLQIVSGERE-------LENLDPKERAKIEKKRGLIRAGMGISAPEEPEKNGFEPR------FAVEGLAVA--------DEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVA-----GKGPTGAKKKGAKIKMVDARM 723
            D QI S +R+       L  ++PK++ K  + R LI AGMG     +  K  FE         A++G   A        D+REYGS+EE YDDEDRA+QLAL TMMLRKHRAKE++DAAYNR++WND K LP+WF DDE++H+RPQVP+PP L+ QMK KF+SL++KPIKKVAEARARKRKRAS +L +AKK+A A+A+NP+MS+R+KLK +QQA+KKGA +D P+K YVVA     GK  T  K KG+K+K VDAR+
Sbjct:  662 DKQIRSEKRKKDAERKALAAMEPKQKEKELRARKLIAAGMGQPQQADDGK-AFEIAPAQAIMLALKGNGSAGNGLPPPIDDREYGSEEEDYDDEDRARQLALGTMMLRKHRAKEILDAAYNRYTWNDPKALPEWFTDDERKHYRPQVPIPPELVAQMKEKFLSLSSKPIKKVAEARARKRKRASTKLKAAKKQANAMASNPDMSDRQKLKVIQQALKKGAAADKPTKSYVVAKKFQGGKPSTSGKTKGSKVKFVDARL 918          
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: A0A397FG60_9STRA (Spb1_C domain-containing protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FG60_9STRA)

HSP 1 Score: 199 bits (505), Expect = 2.070e-59
Identity = 124/248 (50.00%), Postives = 169/248 (68.15%), Query Frame = 1
Query:    7 EDGIADDDLQIVSGERELEN-LDPKERAKIEKKRGLIRAGMGISAPEEP--EKNGFEPRFAVEGLAVADEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVAGKGPTGAKKKGAK------IKMVDARM 723
            EDG  DD+    + E   +  L   +  +  +K  LI+AGMG SA   P    + FE   A   L V D R+Y SD E YD+ED+A+ +A+ATMML+KH+AKEM+D +YNR++WND  DLPDWF DDE+RH+RPQ+ +P  L++QMK KFM +ATKP+KKVAEARARKR++  +++ +AKKKA  IA  P+MS REKLKA+ +AMK  AK+   SK+YV++ +G + A  KG K      +K+VD RM
Sbjct:   43 EDGFLDDEATATAKEEARKTPLTALQLQRKNEKESLIKAGMG-SAAHIPVSSTSAFEVVKADVELPVMDARQYDSDHEDYDEEDKARTMAIATMMLKKHKAKEMVDDSYNRYAWNDPTDLPDWFQDDEERHYRPQLTVPKHLMDQMKEKFMDIATKPVKKVAEARARKRRQTLKKVKAAKKKANDIANLPDMSTREKLKAIDKAMKT-AKTKKESKLYVISRRGRSAANTKGHKKGDKGAVKVVDPRM 288          
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: A0A024TJC0_9STRA (Putative rRNA methyltransferase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TJC0_9STRA)

HSP 1 Score: 206 bits (524), Expect = 9.340e-58
Identity = 122/248 (49.19%), Postives = 172/248 (69.35%), Query Frame = 1
Query:    7 EDGIADDDLQIVSGERELENLDPKERAKIEKKR---GLIRAGMGISAPEEPEKNGFEPRFAVEGLAVADEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVAGKGPTGAKKKGAK------IKMVDARM 723
            +DG  DDD    +  +EL    P   A++++K     LI+AGMG +AP     + FE       L V D R+Y SD E YD+ED+A+ +A+ATMML+KH+AK+M+D +YNR++WND  DLPDWF+DDE+RH+RPQ+ +P  L++QMK +FM +ATKP+KKVAEARARKR++  +++ +AKKKA  IA  P+MS REKLKA+ +AMK  AK+   SK+YV++ +G + A  KG K      +K+VD RM
Sbjct:  622 DDGFLDDDATAHA--KELARKTPLTAAQLQRKNEKEALIKAGMGTAAPPVAASSTFEVVQPDVELPVMDSRQYDSDHEDYDEEDKARTMAIATMMLQKHKAKDMIDDSYNRYAWNDPADLPDWFLDDEERHYRPQLAVPKHLMDQMKERFMDIATKPVKKVAEARARKRRQTLKKVKAAKKKANDIANLPDMSTREKLKAIDKAMK-AAKTKKESKLYVISRRGRSAANTKGFKKGDKGAVKVVDPRM 866          
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: A0A8K1CK50_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CK50_PYTOL)

HSP 1 Score: 204 bits (520), Expect = 3.500e-57
Identity = 130/255 (50.98%), Postives = 175/255 (68.63%), Query Frame = 1
Query:    7 EDGIADDDLQIVSGERELENLDPKERAKIE-KKRGLIRAGMGISAPEEPEKNGFEPRFAV--------EG-LAVADEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVAGKG------PTGAKKKGAKIKMVDARM 723
            E G ADDD   V     +E+ D  + +K+  +K+ LIR GMG +  +    +G    + V        EG L V D+R+Y SD E YD EDRAK LALATMM+R+ +AKEM+DA+YNRF+WND  +LPDWFVDDE++H+RPQ+P+P  LLEQMK +FM +ATKP+KKVAEARARK+++  ++L +AKKKAT IA  P+MS REKLKA+ +AMK GA+    +KVYVV+ +G       +  KK   K+K+VD R+
Sbjct:  626 EAGNADDDSDAV-----MESDDEGKESKVSAEKKALIRLGMGAAVNQ---SSGVGKEYEVVAAGDEAEEGPLPVLDDRKYDSDHEEYDAEDRAKTLALATMMIRRDKAKEMIDASYNRFAWNDSTELPDWFVDDEEKHYRPQMPIPKKLLEQMKERFMDMATKPVKKVAEARARKQRQQMKKLKAAKKKATDIANLPDMSTREKLKAINRAMK-GAQLKKDNKVYVVSRRGGRSSTAQSAGKKPTGKVKLVDPRL 871          
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: A0A1V9YZ74_9STRA (rRNA methyltransferase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YZ74_9STRA)

HSP 1 Score: 198 bits (503), Expect = 4.430e-57
Identity = 118/215 (54.88%), Postives = 153/215 (71.16%), Query Frame = 1
Query:  100 KRGLIRAGMGISAPEEP-EKNGFEPRFAVEGLAVADEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVAGKGPTGAKKKGAK------IKMVDARM 723
            K  LI+AGMG SA   P     FE   A   L +AD R+Y SD E YD ED+A+ +ALA MMLR+  AKE++D +YNR++WND  +LPDWF+DDE+RHHRPQ+P+P  L+EQMK KFM +ATKP+KKVAEARARK+++  ++L  AKKKA  IA  P+MS REKLKA+ +AMK  AK+   SK+YVV+ +G + A  KG K      +K+VD RM
Sbjct:  268 KEALIKAGMGASALAAPLTTTNFEVVKAEPELPIADPRKYDSDNEDYDAEDQARTMALAHMMLRRDTAKELVDNSYNRYAWNDPTELPDWFLDDEERHHRPQIPVPKHLMEQMKEKFMEMATKPVKKVAEARARKQRQQMKKLKVAKKKANDIANLPDMSTREKLKAIDKAMK-NAKTKKESKLYVVSRRGRSAANSKGFKKGDKGSVKVVDPRM 481          
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: A0A6G0X934_9STRA (Putative rRNA methyltransferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X934_9STRA)

HSP 1 Score: 204 bits (519), Expect = 4.600e-57
Identity = 122/248 (49.19%), Postives = 170/248 (68.55%), Query Frame = 1
Query:    7 EDGIADDDLQIVSGERELENLDPKERAKIEKKRGLIRAGMGISAPEEPEKNG---FEPRFAVEGLAVADEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVAGKGPTGAKKKGAK------IKMVDARM 723
            EDG  D++  +   ++ L     ++  + ++K  LI+AGMG S       +    FE   A + L V D REY SD E YD+ED+A+ +A+ATMML+KH+AKE++D +YNR++WND  DLPDWFVDDE+RH+RPQ+ +P  L++QMK KFM +ATKP+KKVAEARARKR++  +++ +AKKKA  IA  P+MS REKLKA+ +AMK  AK    SK+YVV+ +G + A  KG K      +K+VD RM
Sbjct:  623 EDGFLDEEAPVEDSKKPLT---AQQMQRKQEKEALIKAGMGASVNSSSTLSASSTFEVVKADDELPVVDSREYDSDHEDYDEEDKARTMAIATMMLKKHKAKEIVDDSYNRYAWNDPSDLPDWFVDDEERHYRPQLQVPKHLMDQMKEKFMDIATKPVKKVAEARARKRRQMMKKVKAAKKKANDIANLPDMSTREKLKAIDKAMK-SAKVKKESKLYVVSRRGRSAANSKGYKKGDKGAVKVVDPRM 866          
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: A0A484DZR4_BRELC (Spb1_C domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZR4_BRELC)

HSP 1 Score: 193 bits (490), Expect = 1.740e-56
Identity = 119/254 (46.85%), Postives = 169/254 (66.54%), Query Frame = 1
Query:   16 IADDDLQIVSGERELENLDPKERAKIEKKRGLIRAGMG--------------ISAPEEPEKNGFEPRFAVEGLAVADEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVAGKG---PTGAKKKG-AKIKMVDARM 723
            +  D+  +++ E  +++ D        +K+ LIR+GMG              ++A EEP++N          L + DER+Y SD E YD EDRAK LALA+MM+ K +AK+++DA+YNR++WND + LPDWFVDDE++H+RPQ+P+P  ++ QMK +FM +ATKP+KKVAEAR RK +   ++L +AKK+AT IA  P+MS REKLKA+ +AMK GA+    SKVYVV+ +G     G KK G  K+K+VD RM
Sbjct:  108 VGSDEEAVINAEALMDSNDEL----TAEKKALIRSGMGAALDSTNSAEKIEVVAAGEEPDEN---------ALPIYDERKYDSDHEEYDAEDRAKTLALASMMIHKSKAKDLIDASYNRYAWNDSEALPDWFVDDEEKHNRPQIPIPKHVMAQMKERFMEMATKPVKKVAEARGRKNRLKMKKLKAAKKQATDIANLPDMSTREKLKAIDRAMK-GARLKKESKVYVVSTRGGAKTAGGKKAGKGKVKIVDPRM 347          
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Match: A0A418EUC8_9STRA (Spb1_C domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418EUC8_9STRA)

HSP 1 Score: 199 bits (505), Expect = 2.570e-56
Identity = 124/248 (50.00%), Postives = 169/248 (68.15%), Query Frame = 1
Query:    7 EDGIADDDLQIVSGERELEN-LDPKERAKIEKKRGLIRAGMGISAPEEP--EKNGFEPRFAVEGLAVADEREYGSDEEPYDDEDRAKQLALATMMLRKHRAKEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFMSLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAVQQAMKKGAKSDIPSKVYVVAGKGPTGAKKKGAK------IKMVDARM 723
            EDG  DD+    + E   +  L   +  +  +K  LI+AGMG SA   P    + FE   A   L V D R+Y SD E YD+ED+A+ +A+ATMML+KH+AKEM+D +YNR++WND  DLPDWF DDE+RH+RPQ+ +P  L++QMK KFM +ATKP+KKVAEARARKR++  +++ +AKKKA  IA  P+MS REKLKA+ +AMK  AK+   SK+YV++ +G + A  KG K      +K+VD RM
Sbjct:  363 EDGFLDDEATATAKEEARKTPLTALQLQRKNEKESLIKAGMG-SAAHIPVSSTSAFEVVKADVELPVMDARQYDSDHEDYDEEDKARTMAIATMMLKKHKAKEMVDDSYNRYAWNDPTDLPDWFQDDEERHYRPQLTVPKHLMDQMKEKFMDIATKPVKKVAEARARKRRQTLKKVKAAKKKANDIANLPDMSTREKLKAIDKAMKT-AKTKKESKLYVISRRGRSAANTKGHKKGDKGAVKVVDPRM 608          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94950.16906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP12_9PHAE1.120e-12880.62Spb1_C domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FSF8_ECTSI3.210e-11880.00Putative rRNA methyltransferase n=1 Tax=Ectocarpus... [more]
A0A835Z2H0_9STRA3.210e-6955.81Putative rRNA methyltransferase n=1 Tax=Tribonema ... [more]
A0A397FG60_9STRA2.070e-5950.00Spb1_C domain-containing protein n=11 Tax=Aphanomy... [more]
A0A024TJC0_9STRA9.340e-5849.19Putative rRNA methyltransferase n=2 Tax=Aphanomyce... [more]
A0A8K1CK50_PYTOL3.500e-5750.98Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YZ74_9STRA4.430e-5754.88rRNA methyltransferase (Fragment) n=1 Tax=Thrausto... [more]
A0A6G0X934_9STRA4.600e-5749.19Putative rRNA methyltransferase n=1 Tax=Aphanomyce... [more]
A0A484DZR4_BRELC1.740e-5646.85Spb1_C domain-containing protein n=1 Tax=Bremia la... [more]
A0A418EUC8_9STRA2.570e-5650.00Spb1_C domain-containing protein n=1 Tax=Aphanomyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94950contigH-elongata_contig94950:305..2152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score376.7
Seed ortholog evalue8e-102
Seed eggNOG ortholog2880.D7FSF8
Preferred nameSPB1
KEGG koko:K14857
GOsGO:0000154,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008650,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0030684,GO:0030687,GO:0031167,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360,GO:1990904
EggNOG free text desc.Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily
EggNOG OGsCOG0293@1,KOG1098@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-04_000680.1
Exons4
Model size723
Cds size723
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94950.16906.1prot_H-elongata_contig94950.16906.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94950 305..2152 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931344.4471104-CDS-H-elongata_contig94950:304..4591622931344.4471104-CDS-H-elongata_contig94950:304..459Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94950 305..459 -
1691679798.3696883-CDS-H-elongata_contig94950:304..4591691679798.3696883-CDS-H-elongata_contig94950:304..459Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94950 305..459 -
1622931344.462216-CDS-H-elongata_contig94950:1303..16431622931344.462216-CDS-H-elongata_contig94950:1303..1643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94950 1304..1643 -
1691679798.3801088-CDS-H-elongata_contig94950:1303..16431691679798.3801088-CDS-H-elongata_contig94950:1303..1643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94950 1304..1643 -
1622931344.4740644-CDS-H-elongata_contig94950:1864..19241622931344.4740644-CDS-H-elongata_contig94950:1864..1924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94950 1865..1924 -
1691679798.3928409-CDS-H-elongata_contig94950:1864..19241691679798.3928409-CDS-H-elongata_contig94950:1864..1924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94950 1865..1924 -
1622931344.4894352-CDS-H-elongata_contig94950:1984..21521622931344.4894352-CDS-H-elongata_contig94950:1984..2152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94950 1985..2152 -
1691679798.4036522-CDS-H-elongata_contig94950:1984..21521691679798.4036522-CDS-H-elongata_contig94950:1984..2152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94950 1985..2152 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94950.16906.1

>prot_H-elongata_contig94950.16906.1 ID=prot_H-elongata_contig94950.16906.1|Name=mRNA_H-elongata_contig94950.16906.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=241bp
MTEDGIADDDLQIVSGERELENLDPKERAKIEKKRGLIRAGMGISAPEEP
EKNGFEPRFAVEGLAVADEREYGSDEEPYDDEDRAKQLALATMMLRKHRA
KEMMDAAYNRFSWNDDKDLPDWFVDDEKRHHRPQVPLPPALLEQMKNKFM
SLATKPIKKVAEARARKRKRASQRLSSAKKKATAIAANPEMSEREKLKAV
QQAMKKGAKSDIPSKVYVVAGKGPTGAKKKGAKIKMVDARM
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mRNA from alignment at H-elongata_contig94950:305..2152-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94950.16906.1 ID=mRNA_H-elongata_contig94950.16906.1|Name=mRNA_H-elongata_contig94950.16906.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1848bp|location=Sequence derived from alignment at H-elongata_contig94950:305..2152- (Himanthalia elongata Himel1 dioecious)
ATGACTGAAGACGGCATTGCCGACGATGACCTTCAAATCGTTTCGGGTGA ACGCGAGCTAGAAAATCTAGATCCAAAAGAACGTGCGAAGATCGAAAAAA AGCGAGGTCTTATTCGGGCAGGAATGGGAATTTCTGCCCCCGAAGAGCCC GAGAAAAACGGTTTTGAGGTAGCAAAGGCGACAAGAGCGGCGATTGCGAT GGTAGGGGGACAAAAAGCATCTGCGAAGCCGAGGTTCGCTGTTGAAGGGC TCGCCGTGGCTGATGAAAGAGAATATGGATCGGATGAGGTGAGATCTCGT GGTGCAGTTTGTTAGGAGGGTTGGAATGAAATTATATTGAACGATGTACT TTTTAAAGAAAAATTATTTCTTAAGTGTGCTAAATATTGGTTTATGTAAT AAACATAACCAAAGCCTTTCATTAAAAAAAAAGTTAAATAGTTTTTTGCA CGATTTCCCAAATAATCAATAAAATCATTCGTTGATACGCATTCCATTTA CTTTGATAGGAGCCTTATGATGATGAAGATCGGGCTAAGCAGCTTGCCCT CGCAACGATGATGCTTCGTAAGCATCGCGCCAAAGAGATGATGGACGCAG CCTACAACCGCTTTAGCTGGAATGATGACAAAGACTTGCCCGACTGGTTT GTCGACGACGAGAAGCGCCACCATAGGCCGCAGGTTCCCCTGCCTCCTGC CCTCTTGGAGCAGATGAAAAACAAGTTTATGTCTTTGGCGACGAAACCTA TCAAGAAGGTGGCTGAGGCTAGAGCACGAAAACGAAAGAGGGCGTCGCAA CGCCTCTCAAGTGCTAAGAAGAAGGCTACGGCAATCGCGGCAAACCCGGG TACGTTTTTCGTTTGTTAGTGTCCTACGTGTAAATCTAATTATAAGTCGC AGCGCGCGCGCGTTCACTTATTGCATATGGAGTCCACCTCATAAACCCCC GTGTGTAGAGTTGTGTATGGTACCAATATTTATTATTATATCGGTCCAAT CTATCGGTTATTGATACGGATAAATCCTATATTAGGGGGCCCGTAAATCA TAAAAGGGCGTAAGGATGTGACATTCCCGTATTCCTCGTACACAGCTGGC CACGAGCCCACCACTGCAGCAATGTATGCTGCGCACGGTTTGAACCCCGC TGCCGCCACCATGGGGGTCCATAAAACTGCGAAGAAAAAAAGGTTAGAGA TTCAAGACAGCGCCCAAGCTCTCGAACGCCGCGAATGCCTCGAACCCTGT GTCGTGGTACTACCAAGCGTACAGCGAACTCAAAACTTGGTAGTACCGCC ACACATGATTCGAGACATTTGGGGGATTCGAGAGCTTGGGCGCTGTCTTA AATCTCTCAATCTTTTCTTTGTCTGTTAGCTGGGGCTCTAGTGGTGGTGG CAGCGTGGTTTAAACTGTGCGCAGCCTCTCAATCGTCAGGCATTGAAAGC TGTAGGTGTCGGCTCATGGTCTCTTGGGACTGTCACATCCATACGCCTTT TTACAAATCACGGGCCCCCCAATAACCGATATATTGGACCGATATAGGTG TGTGGATGTTCGGAGGTTTGGAATGAGTTCATTTAAAAATAAATATATAT ATATTCATACCATTAAACATACTAAGCAACTCTACCATGCATGACTTCAA ATTGGTCCCTATCGTATTTATTTTACTCCGCGTTGCCTCACAGAAATGTC GGAAAGAGAAAAGCTGAAGGCGGTACAGCAGGCCATGAAAAAGGGCGCAA AGTCGGACATACCCTCAAAGGTGTATGTTGTGGCCGGAAAGGGCCCCACC GGGGCTAAGAAAAAGGGGGCAAAGATCAAGATGGTAGATGCGAGGATG
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Coding sequence (CDS) from alignment at H-elongata_contig94950:305..2152-

>mRNA_H-elongata_contig94950.16906.1 ID=mRNA_H-elongata_contig94950.16906.1|Name=mRNA_H-elongata_contig94950.16906.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1446bp|location=Sequence derived from alignment at H-elongata_contig94950:305..2152- (Himanthalia elongata Himel1 dioecious)
ATGACTGAAGACGGCATTGCCGACGATGACCTTCAAATCGTTTCGGGTGA
ACGCGAGCTAGAAAATCTAGATCCAAAAGAACGTGCGAAGATCGAAAAAA
AGCGAGGTCTTATTCGGGCAGGAATGGGAATTTCTGCCCCCGAAGAGCCC
GAGAAAAACGGTTTTGAGATGACTGAAGACGGCATTGCCGACGATGACCT
TCAAATCGTTTCGGGTGAACGCGAGCTAGAAAATCTAGATCCAAAAGAAC
GTGCGAAGATCGAAAAAAAGCGAGGTCTTATTCGGGCAGGAATGGGAATT
TCTGCCCCCGAAGAGCCCGAGAAAAACGGTTTTGAGCCGAGGTTCGCTGT
TGAAGGGCTCGCCGTGGCTGATGAAAGAGAATATGGATCGGATGAGCCGA
GGTTCGCTGTTGAAGGGCTCGCCGTGGCTGATGAAAGAGAATATGGATCG
GATGAGGAGCCTTATGATGATGAAGATCGGGCTAAGCAGCTTGCCCTCGC
AACGATGATGCTTCGTAAGCATCGCGCCAAAGAGATGATGGACGCAGCCT
ACAACCGCTTTAGCTGGAATGATGACAAAGACTTGCCCGACTGGTTTGTC
GACGACGAGAAGCGCCACCATAGGCCGCAGGTTCCCCTGCCTCCTGCCCT
CTTGGAGCAGATGAAAAACAAGTTTATGTCTTTGGCGACGAAACCTATCA
AGAAGGTGGCTGAGGCTAGAGCACGAAAACGAAAGAGGGCGTCGCAACGC
CTCTCAAGTGCTAAGAAGAAGGCTACGGCAATCGCGGCAAACCCGGGAGC
CTTATGATGATGAAGATCGGGCTAAGCAGCTTGCCCTCGCAACGATGATG
CTTCGTAAGCATCGCGCCAAAGAGATGATGGACGCAGCCTACAACCGCTT
TAGCTGGAATGATGACAAAGACTTGCCCGACTGGTTTGTCGACGACGAGA
AGCGCCACCATAGGCCGCAGGTTCCCCTGCCTCCTGCCCTCTTGGAGCAG
ATGAAAAACAAGTTTATGTCTTTGGCGACGAAACCTATCAAGAAGGTGGC
TGAGGCTAGAGCACGAAAACGAAAGAGGGCGTCGCAACGCCTCTCAAGTG
CTAAGAAGAAGGCTACGGCAATCGCGGCAAACCCGGAAATGTCGGAAAGA
GAAAAGCTGAAGGCGGTACAGCAGGCCATGAAAAAGGGCGCAAAGTCGGA
CATACCCTCAAAGGTGTATGTTGTGGCCGGAAAGGGCCCCACCGGGGCTA
AGAAAAAGGGGGCAAAGATCAAGATGGTAGATGCGAGGATGAAATGTCGG
AAAGAGAAAAGCTGAAGGCGGTACAGCAGGCCATGAAAAAGGGCGCAAAG
TCGGACATACCCTCAAAGGTGTATGTTGTGGCCGGAAAGGGCCCCACCGG
GGCTAAGAAAAAGGGGGCAAAGATCAAGATGGTAGATGCGAGGATG
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