mRNA_H-elongata_contig94945.16905.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94945.16905.1
Unique NamemRNA_H-elongata_contig94945.16905.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig94945.16905.1 vs. uniprot
Match: D7G1Y2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Y2_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.450e-13
Identity = 26/39 (66.67%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 YLELNSWLWQANGLNILVDPIFGVLDFGMPAMIQARKRV 117
            YLELNSW+W+ NG+NILVDP+FG +DFG+P ++QA K+V
Sbjct:   31 YLELNSWMWEVNGINILVDPVFGTVDFGVPLLVQANKQV 69
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BLAST of mRNA_H-elongata_contig94945.16905.1 vs. uniprot
Match: A0A7N0UND8_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UND8_KALFE)

HSP 1 Score: 58.2 bits (139), Expect = 1.220e-8
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 YLELNSWLWQANGLNILVDPIF-GVLDFGMPAMIQARKRVSYNHTFID 141
            YLE NSWLW  NGL +LVDPI  G LDFG+P +  A KR+  N +  D
Sbjct:  111 YLEGNSWLWDVNGLKLLVDPILVGNLDFGIPWLYDAAKRILKNFSLSD 158
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BLAST of mRNA_H-elongata_contig94945.16905.1 vs. uniprot
Match: A0A6V7Q5P2_ANACO (Uncharacterized protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7Q5P2_ANACO)

HSP 1 Score: 56.2 bits (134), Expect = 2.350e-8
Identity = 27/48 (56.25%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 YLELNSWLWQANGLNILVDPIF-GVLDFGMPAMIQARKRVSYNHTFID 141
            YLE NSWLW   GLNILVDPI  G LDFG+P + +  K+V  N    D
Sbjct:   86 YLEGNSWLWDVEGLNILVDPILVGNLDFGLPWLFEGAKKVLGNFWLDD 133
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BLAST of mRNA_H-elongata_contig94945.16905.1 vs. uniprot
Match: A0A199UE60_ANACO (Uncharacterized protein (Fragment) n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199UE60_ANACO)

HSP 1 Score: 56.6 bits (135), Expect = 3.670e-8
Identity = 27/48 (56.25%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 YLELNSWLWQANGLNILVDPIF-GVLDFGMPAMIQARKRVSYNHTFID 141
            YLE NSWLW   GLNILVDPI  G LDFG+P + +  K+V  N    D
Sbjct:   90 YLEGNSWLWDVEGLNILVDPILVGNLDFGLPWLFEGAKKVLGNFRLDD 137
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BLAST of mRNA_H-elongata_contig94945.16905.1 vs. uniprot
Match: A0A7N0T5Q9_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0T5Q9_KALFE)

HSP 1 Score: 56.6 bits (135), Expect = 4.210e-8
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 YLELNSWLWQANGLNILVDPIF-GVLDFGMPAMIQARKRVSYNHTFID 141
            YLE+N WLW+ NGL +LVDPI  G LDFGMP +    K+   N +  D
Sbjct:   77 YLEVNGWLWEVNGLKLLVDPILVGNLDFGMPWLSDGAKKTLKNFSLSD 124
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BLAST of mRNA_H-elongata_contig94945.16905.1 vs. uniprot
Match: A0A6P5EXW7_ANACO (uncharacterized protein LOC109710258 isoform X1 n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5EXW7_ANACO)

HSP 1 Score: 56.2 bits (134), Expect = 5.830e-8
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:    1 YLELNSWLWQANGLNILVDPIF-GVLDFGMPAMIQARKRVSYNHTFI 138
            YLE NSWLW   GLNILVDPI  G LDFG+P + +  K+V  N   +
Sbjct:   90 YLEGNSWLWDVEGLNILVDPILVGNLDFGLPWLFEGAKKVLGNFRMV 136
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BLAST of mRNA_H-elongata_contig94945.16905.1 vs. uniprot
Match: A0A4Y7KE53_PAPSO (BRO1 domain-containing protein n=1 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7KE53_PAPSO)

HSP 1 Score: 54.7 bits (130), Expect = 2.080e-7
Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:    1 YLELNSWLWQANGLNILVDPIF-GVLDFGMPAMIQARKRVSYNHTFID 141
            YLE NSW+W  NGL ILVDPI  G LDFG+P +  A K+   N    D
Sbjct:  481 YLEGNSWIWDVNGLKILVDPILVGNLDFGIPWLYDAAKKYVKNFQLSD 528
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BLAST of mRNA_H-elongata_contig94945.16905.1 vs. uniprot
Match: A0A2I0XDI7_9ASPA (Uncharacterized protein n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0XDI7_9ASPA)

HSP 1 Score: 54.3 bits (129), Expect = 2.820e-7
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 YLELNSWLWQANGLNILVDPIF-GVLDFGMPAMIQARKRV 117
            YLE NSWLW  +G+N+LVDPI  G LDFG+P +  A K+V
Sbjct:   98 YLEGNSWLWNTDGVNVLVDPILVGNLDFGVPWLYDAAKKV 137
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BLAST of mRNA_H-elongata_contig94945.16905.1 vs. uniprot
Match: A0A2N9F1H0_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F1H0_FAGSY)

HSP 1 Score: 53.9 bits (128), Expect = 3.820e-7
Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:    1 YLELNSWLWQANGLNILVDPIF-GVLDFGMPAMIQARKRVSYNHTFID 141
            YLE NSWLW  +G+ ILVDPI  G LDFG+P +  A KR   N    D
Sbjct:   79 YLEGNSWLWDVDGIKILVDPILVGNLDFGIPWLYDAAKRFLKNFKLSD 126
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BLAST of mRNA_H-elongata_contig94945.16905.1 vs. uniprot
Match: A0A7S3XJM1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJM1_HETAK)

HSP 1 Score: 53.9 bits (128), Expect = 3.850e-7
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    4 LELNSWLWQANGLNILVDPIFGVLDFGMPAMIQARKRVSYNHTFI 138
            LE NSW    NGL I VDP++  LDFG+PA+ +A K+V  N T +
Sbjct:  102 LEGNSWFCSLNGLKIFVDPVYDTLDFGIPALYKADKKVLDNQTLL 146
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94945.16905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7G1Y2_ECTSI2.450e-1366.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7N0UND8_KALFE1.220e-856.25Uncharacterized protein n=1 Tax=Kalanchoe fedtsche... [more]
A0A6V7Q5P2_ANACO2.350e-856.25Uncharacterized protein n=1 Tax=Ananas comosus var... [more]
A0A199UE60_ANACO3.670e-856.25Uncharacterized protein (Fragment) n=1 Tax=Ananas ... [more]
A0A7N0T5Q9_KALFE4.210e-852.08Uncharacterized protein n=1 Tax=Kalanchoe fedtsche... [more]
A0A6P5EXW7_ANACO5.830e-855.32uncharacterized protein LOC109710258 isoform X1 n=... [more]
A0A4Y7KE53_PAPSO2.080e-754.17BRO1 domain-containing protein n=1 Tax=Papaver som... [more]
A0A2I0XDI7_9ASPA2.820e-760.00Uncharacterized protein n=2 Tax=Dendrobium catenat... [more]
A0A2N9F1H0_FAGSY3.820e-754.17Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A7S3XJM1_HETAK3.850e-751.11Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94945contigH-elongata_contig94945:299..439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue4.8e-11
Seed eggNOG ortholog2880.D7G1Y2
EggNOG free text desc.Beta-lactamase superfamily domain
EggNOG OGs2QQUU@2759,COG2220@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931344.4036245-CDS-H-elongata_contig94945:298..4391622931344.4036245-CDS-H-elongata_contig94945:298..439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94945 299..439 -
1691679798.35953-CDS-H-elongata_contig94945:298..4391691679798.35953-CDS-H-elongata_contig94945:298..439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94945 299..439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94945.16905.1prot_H-elongata_contig94945.16905.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94945 299..439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94945.16905.1

>prot_H-elongata_contig94945.16905.1 ID=prot_H-elongata_contig94945.16905.1|Name=mRNA_H-elongata_contig94945.16905.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
YLELNSWLWQANGLNILVDPIFGVLDFGMPAMIQARKRVSYNHTFID
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mRNA from alignment at H-elongata_contig94945:299..439-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94945.16905.1 ID=mRNA_H-elongata_contig94945.16905.1|Name=mRNA_H-elongata_contig94945.16905.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig94945:299..439- (Himanthalia elongata Himel1 dioecious)
TATCTCGAGCTTAACTCCTGGTTGTGGCAAGCCAACGGGCTGAATATCCT
GGTTGACCCCATCTTCGGCGTCCTCGATTTCGGCATGCCCGCCATGATTC
AGGCCAGAAAGCGAGTGAGTTACAACCACACATTTATAGAT
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Coding sequence (CDS) from alignment at H-elongata_contig94945:299..439-

>mRNA_H-elongata_contig94945.16905.1 ID=mRNA_H-elongata_contig94945.16905.1|Name=mRNA_H-elongata_contig94945.16905.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig94945:299..439- (Himanthalia elongata Himel1 dioecious)
TATCTCGAGCTTAACTCCTGGTTGTGGCAAGCCAACGGGCTGAATATCCT
GGTTGACCCCATCTTCGGCGTCCTCGATTTCGGCATGCCCGCCATGATTC
AGGCCAGAAAGCGAGTGAGTTACAACCACACATTTATAGATTATCTCGAG
CTTAACTCCTGGTTGTGGCAAGCCAACGGGCTGAATATCCTGGTTGACCC
CATCTTCGGCGTCCTCGATTTCGGCATGCCCGCCATGATTCAGGCCAGAA
AGCGAGTGAGTTACAACCACACATTTATAGAT
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