mRNA_H-elongata_contig94882.16903.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94882.16903.1
Unique NamemRNA_H-elongata_contig94882.16903.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig94882.16903.1 vs. uniprot
Match: A0A6H5KRI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI6_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.360e-22
Identity = 45/57 (78.95%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 VSLQKRFSDQRAKLLALEYHDPFTTESLALVERLFNDLVATTESYEDLQQTVSNPLD 171
            VS+QKR SDQRA+LLAL+YHDPFT ESLALVERLF DLV TTESYEDLQQ V    D
Sbjct:    7 VSVQKRLSDQRARLLALDYHDPFTAESLALVERLFEDLVTTTESYEDLQQRVREQTD 63
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BLAST of mRNA_H-elongata_contig94882.16903.1 vs. uniprot
Match: D8LTQ9_ECTSI (Basal body protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ9_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 6.340e-19
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 VSLQKRFSDQRAKLLALEYHDPFTTESLALVERLFNDLVATTESYEDLQQ 150
            VS+QKR SDQRA+LLAL+YHDPFT ESLALVERLF DLV TTESYEDLQQ
Sbjct:    7 VSVQKRLSDQRARLLALDYHDPFTAESLALVERLFEDLVTTTESYEDLQQ 56
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BLAST of mRNA_H-elongata_contig94882.16903.1 vs. uniprot
Match: T1HA73_RHOPR (Uncharacterized protein n=2 Tax=Rhodnius TaxID=13248 RepID=T1HA73_RHOPR)

HSP 1 Score: 49.7 bits (117), Expect = 3.170e-5
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 VSLQKRFSDQRAKLLALEYHDPFTTESLALVERLFNDLVATTES---YEDLQQT 153
            V +++++ D R KL  + YH+P +TESL LVE+LFNDL+ T +    YEDL ++
Sbjct:    2 VLVEEQYKDIRRKLDEMGYHEPCSTESLLLVEKLFNDLLRTHDKLLMYEDLAKS 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94882.16903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KRI6_9PHAE1.360e-2278.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTQ9_ECTSI6.340e-1986.00Basal body protein n=1 Tax=Ectocarpus siliculosus ... [more]
T1HA73_RHOPR3.170e-546.30Uncharacterized protein n=2 Tax=Rhodnius TaxID=132... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94882contigH-elongata_contig94882:1381..1587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931344.214019-CDS-H-elongata_contig94882:1380..15871622931344.214019-CDS-H-elongata_contig94882:1380..1587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94882 1381..1587 -
1691679798.2657619-CDS-H-elongata_contig94882:1380..15871691679798.2657619-CDS-H-elongata_contig94882:1380..1587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94882 1381..1587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94882.16903.1prot_H-elongata_contig94882.16903.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94882 1381..1587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94882.16903.1

>prot_H-elongata_contig94882.16903.1 ID=prot_H-elongata_contig94882.16903.1|Name=mRNA_H-elongata_contig94882.16903.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
VSLQKRFSDQRAKLLALEYHDPFTTESLALVERLFNDLVATTESYEDLQQ
TVSNPLDEGLVLLPHQLQ*
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mRNA from alignment at H-elongata_contig94882:1381..1587-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94882.16903.1 ID=mRNA_H-elongata_contig94882.16903.1|Name=mRNA_H-elongata_contig94882.16903.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig94882:1381..1587- (Himanthalia elongata Himel1 dioecious)
GTCAGCTTACAGAAAAGGTTCTCGGATCAGAGGGCCAAGCTGCTCGCTTT
GGAGTACCATGACCCGTTCACTACGGAATCGCTTGCCCTGGTGGAGAGAC
TCTTCAACGACCTGGTTGCGACGACGGAGAGCTACGAGGACCTCCAGCAG
ACGGTGAGCAACCCACTAGATGAAGGGTTGGTGTTGTTGCCACATCAACT
ACAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig94882:1381..1587-

>mRNA_H-elongata_contig94882.16903.1 ID=mRNA_H-elongata_contig94882.16903.1|Name=mRNA_H-elongata_contig94882.16903.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig94882:1381..1587- (Himanthalia elongata Himel1 dioecious)
GTCAGCTTACAGAAAAGGTTCTCGGATCAGAGGGCCAAGCTGCTCGCTTT
GGAGTACCATGACCCGTTCACTACGGAATCGCTTGCCCTGGTGGAGAGAC
TCTTCAACGACCTGGTTGCGACGACGGAGAGCTACGAGGACCTCCAGCAG
ACGGTGAGCAACCCACTAGATGAAGGGTTGGTGTTGTTGCCACATCAACT
ACAATAGGTCAGCTTACAGAAAAGGTTCTCGGATCAGAGGGCCAAGCTGC
TCGCTTTGGAGTACCATGACCCGTTCACTACGGAATCGCTTGCCCTGGTG
GAGAGACTCTTCAACGACCTGGTTGCGACGACGGAGAGCTACGAGGACCT
CCAGCAGACGGTGAGCAACCCACTAGATGAAGGGTTGGTGTTGTTGCCAC
ATCAACTACAATAG
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