mRNA_H-elongata_contig9487.16902.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9487.16902.1
Unique NamemRNA_H-elongata_contig9487.16902.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig9487.16902.1 vs. uniprot
Match: A0A6H5JK11_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JK11_9PHAE)

HSP 1 Score: 358 bits (920), Expect = 3.380e-113
Identity = 174/228 (76.32%), Postives = 194/228 (85.09%), Query Frame = 3 
Query:    3 EDAPHTLFGNRAAARLSLDRPQEALEDAETAIKKDGTWLKGYHRKACAHQAMGERSLAMETYRHALDTDPKNKWLQEQVNLAKAEVVNGSKLEPVASLDAWITVFEAMEDSRQRLSTLAHMWNQCALPDRLQIFGAFLLLISG-----TGAHTEDFTEEMMVSLPMDNYEDLK---PVETWMAFFEALNREDKVEGFKRMWEVAEDLEKNVIVNDLRHFFLEPLVNAG 662
            E+APHTLFGNRAAARL L  PQ+ALEDAETAIKKDGTWLKGYHRKACAHQAMGER +A+ETYRHALD +PKNKWLQEQV  A+AEVV+ SK+EPV S+DAWI VFE+M DSR+RLSTLAH+WNQC  PDR +IFG FL LI+G     TG   EDFTE+MMVSLPMDNYEDLK   PV+TWMAFF  L R++KV+GFKRMWE  ED EKNVIVNDLRHFFLEPL+N G
Sbjct:   38 EEAPHTLFGNRAAARLGLGLPQQALEDAETAIKKDGTWLKGYHRKACAHQAMGERGVALETYRHALDIEPKNKWLQEQVRRARAEVVSASKVEPVESVDAWIVVFESMSDSRERLSTLAHLWNQCETPDRHEIFGQFLSLIAGAGTQHTGVKPEDFTEDMMVSLPMDNYEDLKARIPVDTWMAFFRGLTRQEKVQGFKRMWESTEDKEKNVIVNDLRHFFLEPLINGG 265
[Close]
BLAST of mRNA_H-elongata_contig9487.16902.1 vs. uniprot
Match: A0A6V1NCR2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NCR2_HETAK)

HSP 1 Score: 192 bits (488), Expect = 8.080e-52
Identity = 96/222 (43.24%), Postives = 140/222 (63.06%), Query Frame = 3 
Query:    3 EDAPHTL-FGNRAAARLSLDRPQEALEDAETAIKKDGTWLKGYHRKACAHQAMGERSLAMETYRHALDTDPKNKWLQEQVNLAKAEVVNGSKLEPVASLDAWITVFEAMEDSRQRLSTLAHMWNQCALPDRLQIFGAFLLLISGTG----AHTEDFTEEMMVSLPMDNYEDLKPVETWMAFFEALNREDKVEGFKRMWEVAEDLEKNVIVNDLRHFFLEPLV 653
            E  P +L FGNR+AARLSL + +EAL DA  A++ D +++KGYHR+ACA +AMG      E YR A  TD  N W + Q   AK E     + EPV++++ W+ +F  +ED R+R+  LA  WN  +  +R  IF  FL +ISG         E+FTE+ MV LPMDNYED++  + W+ F+ + +   K++ F++ W+   D EKN+I+NDL+HFFL P++
Sbjct:   38 ELVPSSLSFGNRSAARLSLGKNEEALADALEALRIDSSYMKGYHRQACALKAMGNLEGVYEAYRAAFQTDSSNDWAKTQYKQAKKEYTTFLREEPVSTIEQWVKLFGMLEDPRERMMQLALFWNASSPAERQSIFHRFLAIISGAAMTDAVAKEEFTEDKMVELPMDNYEDMQKTDAWVDFYTSQDSAAKLDVFEKTWDATTDQEKNIIINDLKHFFLVPVL 259
[Close]
BLAST of mRNA_H-elongata_contig9487.16902.1 vs. uniprot
Match: A0A7S2XUE6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUE6_9STRA)

HSP 1 Score: 166 bits (419), Expect = 4.570e-42
Identity = 90/238 (37.82%), Postives = 140/238 (58.82%), Query Frame = 3 
Query:   21 LFGNRAAARLSLDRPQEALEDAETAIKKDGTWLKGYHRKACAHQAMGERSL-AMETYRHALDTDPKNKWLQEQVNLAKAEVVNGSKLEPVAS-LDAWITVFEAMEDSRQRLSTLAHMWNQCALPDRLQIFGAFLLLISGT------GAHTEDFTEEMMVSLPMDNYEDLKPVETWMAFFEALNREDKVEGFKRMWEVAEDLEKNVIVNDLRHFFLEPLVNAGLPQGDDENDLEEEGDG 710
            L+GNR+AARL L +  EAL DA+  ++    ++KGYHR ACAHQA G      ++ Y+ AL  D K++W+ +Q+  A+  + +  +   +    + W  +F ++ + R+R+ TLA  WN  +  +RL IF  FL +I  +         +E++TE+ M  LPMDNY D +PV+ WM F+ +    +K+  F+ MWE+  D EK VI+NDL+HFFL P++       DD   +EE G+G
Sbjct:   51 LYGNRSAARLQLKKTAEALADAQRCVELAPGYVKGYHRLACAHQAQGSHPRETVQAYQEALKADSKSQWVAKQLRQARDALNHHWRTNSITGGTEEWKEIFISLTEPRERMFTLACFWNCSSKQERLLIFRRFLDIIGNSPDDARIAPASEEYTEDHMQELPMDNYVDFEPVQPWMDFYTSQESTEKMNTFQLMWELTSDQEKTVIINDLKHFFLVPMLREKGLISDDM--IEENGNG 286
[Close]
BLAST of mRNA_H-elongata_contig9487.16902.1 vs. uniprot
Match: A0A835Z8N5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N5_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.580e-37
Identity = 90/241 (37.34%), Postives = 128/241 (53.11%), Query Frame = 3 
Query:   15 HTLFGNRAAARLSLDRPQEALEDAETAIKKDGTWLKGYHRKACAHQAMGERSLAMETYRHALDTDPKNKWLQEQVNLAKAEVVNGSKLEPVASLDAWITVFEAMEDSRQRLSTLAHMWNQCALPDRLQIFGAFLL--------------------LISG------TGAHTEDFTEEMMVSLPMDNYEDLKPVETWMAFFEALNREDKVEGFKRMWEVAEDLEKNVIVNDLRHFFLEPLVNA 659
            HTL+GNRA  R+ L++  +AL DA+ A+    TW KG++RKACAHQA+G+ + A   +  AL  +P N  ++++   A+AE+      E       +   F A+ D+R+RL  LAH+WN CA  +R  IF  FL                     ++S       TG H EDF  E + +LPMDNY DL P     AF+ AL+   +V  F+  W   +  E++ I NDL HFFL PL+ A
Sbjct:   56 HTLYGNRALVRMHLEKHSDALADADAAVALAPTWAKGFYRKACAHQALGQAAEAHAAFLTALALEPDNALVKKKTVEAQAELARRCGEEAARDEAEFRAAFAALPDARRRLHCLAHLWNLCAPDERHAIFARFLQAATPLAADDADARRAPRDAQVVSSAGDQPHTGVHAEDFPPESLSALPMDNYTDLPPAPGREAFWAALDTPRRVAVFEGAWRAIDQDERDCISNDLAHFFLRPLLAA 296
[Close]
BLAST of mRNA_H-elongata_contig9487.16902.1 vs. uniprot
Match: A0A7S2SEB7_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SEB7_9STRA)

HSP 1 Score: 126 bits (317), Expect = 9.520e-29
Identity = 75/212 (35.38%), Postives = 122/212 (57.55%), Query Frame = 3 
Query:   21 LFGNRAAARLSLDRPQEALEDAETAIKKDGTWLKGYHRKACAHQAMGERSLAMETYRHALDTDPKNKWLQEQVNLAKAE------VVNGSKLEPVASLDAWITVFEAMEDSRQRLSTLAHMWNQCALPDRLQIFGAFLLLISGTGAHTEDFTEEMMVSLPMDNYEDLKPVETWMAFFEALNREDKVEGFKRMWEVAEDLEKNVIVNDLRHFF 638
            L GNR+  RL   + QEALEDA+ +I +D  ++KG+ RKA A  AM ++  A  TY  AL+     K  Q  V +++              +  V S++ +  +F+ M+  R RL+T+A  WN  +  DRL IF AF+ +++G    ++    E + +LPMDNY+D+   +TW  FF +L++ DKV+ F +++    D+E+N+I+ DL+ FF
Sbjct:   53 LLGNRSLVRLKQGKFQEALEDAQLSIGRDVDYVKGHDRKAAAFIAMNKKWQARRTYAFALEHFKNVKNHQASVFMSRKYKELCGLCAKDDFISVVESMEHFDEIFKHMKLERMRLATMATFWNASSNQDRLAIFAAFIQVLTG---ESKPIQVESLSALPMDNYKDVVIPQTWTDFFNSLDQGDKVKMFYQIYGHCTDIERNMIIRDLKEFF 261
[Close]
BLAST of mRNA_H-elongata_contig9487.16902.1 vs. uniprot
Match: A0A1V9Y8G7_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y8G7_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.850e-23
Identity = 62/220 (28.18%), Postives = 108/220 (49.09%), Query Frame = 3 
Query:    3 EDAPHTLFGNRAAARLSLDRPQEALEDAETAIKKDGTWLKGYHRKACAHQAMGERSLAMETYRHALDTDPKNKWLQEQVNLAKAEVVNGSKLEPVASLDAWITVFEAMEDSRQRLSTLAHMWNQCALPDRLQIFGAFLLLISGTGA--HTEDFTEEMMVSLPMDNYEDLKPVETWMAFFEALNREDKVEGFKRMWEVAEDLEKNVIVNDLRHFFLEPLVN 656
            E   HTL+GNR+AAR  L++  +AL+DA TA+  D  W KGY R+  A +A+G    A + Y  A       + + +++   K       + + + + + W  V+  + D++ RL  L   WN+    +R   F  FL +++G         ++ + M  +P   Y+ L   + WM +++ L+   K +    M+ VA   E+  IVND+++F  E   N
Sbjct:   31 EPQQHTLYGNRSAARFHLEKYDDALKDAITAVALDPQWAKGYFRQGNALEALGRPRQAQKAYELAAKYGNNKRQVLQKITAVKKIADKVDREKTIRTREEWKEVYSNISDTKMRLGLLVLFWNKSTKHERFAFFMRFLEILAGQSKPNRISKYSADDMQEIPAVAYDGLSVPQPWMEYYDKLDLAKKADMMHDMYMVASPAEQTTIVNDMKYFVHELCGN 250
[Close]
BLAST of mRNA_H-elongata_contig9487.16902.1 vs. uniprot
Match: A0A3M6TYP9_POCDA (Uncharacterized protein n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TYP9_POCDA)

HSP 1 Score: 65.9 bits (159), Expect = 2.000e-7
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 3 
Query:   18 TLFGNRAAARLSLDRPQEALEDAETAIKKDGTWLKGYHRKACAHQAMGERSLAMETYRHALDTDPKNKWLQEQVNLA 248
            T +GNR+AA + +    +ALEDA+TAIK D  ++KGY R A  H  MG    A+   +  L+ DPKNK  Q+ +  A
Sbjct:   78 TYYGNRSAAYMMIGNYDKALEDAQTAIKTDENFMKGYFRAAKCHLVMGSIGNAINYLQKVLEKDPKNKDAQDDLRTA 154
[Close]
BLAST of mRNA_H-elongata_contig9487.16902.1 vs. uniprot
Match: B3MUJ5_DROAN (Stress-induced-phosphoprotein 1 n=3 Tax=ananassae subgroup TaxID=32347 RepID=B3MUJ5_DROAN)

HSP 1 Score: 65.5 bits (158), Expect = 2.890e-7
Identity = 36/84 (42.86%), Postives = 45/84 (53.57%), Query Frame = 3 
Query:   15 HTLFGNRAAARLSLDRPQEALEDAETAIKKDGTWLKGYHRKACAHQAMGERSLAMETYRHALDTDPKNKWLQEQVNLAKAEVVN 266
            H LF NR+AA     + QEALEDAET IK + +W KGY RK  A   + +   A E Y   L  DP+N+ L        A V+N
Sbjct:   38 HVLFSNRSAAYAKAGKFQEALEDAETTIKLNPSWPKGYSRKGAAAAGLQDFMKAFEAYNEGLKYDPQNEILLRGRQDITASVLN 121
[Close]
BLAST of mRNA_H-elongata_contig9487.16902.1 vs. uniprot
Match: A0A2B4S127_STYPI (DnaJ-like subfamily C member 7 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S127_STYPI)

HSP 1 Score: 65.5 bits (158), Expect = 3.080e-7
Identity = 42/120 (35.00%), Postives = 60/120 (50.00%), Query Frame = 3 
Query:   18 TLFGNRAAARLSLDRPQEALEDAETAIKKDGTWLKGYHRKACAHQAMGERSLAMETYRHALDTDPKNKWLQEQVNLAKAEVVNGSKLEPVASLDAWITVFEAMEDSRQRLSTLAHMWNQC 377
            T +GNR+AA + +    +ALEDA+TAIK D  ++KGY R A  H  MG    A+   +  L+ DP+NK    Q +L  A  V G +     + D         ED R+ +  L H+   C
Sbjct:   78 TYYGNRSAAYMMIGNYDKALEDAQTAIKTDENFMKGYSRAAKCHLVMGSIGNAVNYLQKVLEKDPENK--DAQNDLRTATKVQGYEASAFKAHDE--------EDYRKLIYYLNHILEDC 187
[Close]
BLAST of mRNA_H-elongata_contig9487.16902.1 vs. uniprot
Match: UPI001CF16507 (dnaJ homolog subfamily C member 7-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF16507)

HSP 1 Score: 64.7 bits (156), Expect = 5.330e-7
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 3 
Query:   18 TLFGNRAAARLSLDRPQEALEDAETAIKKDGTWLKGYHRKACAHQAMGERSLAMETYRHALDTDPKNKWLQEQV 239
            T +GNR+AA + L    +ALEDA++A+K D  +LKGY+R A  H AMG    A+      L+ DPKNK  Q  +
Sbjct:   75 TYYGNRSAAHMMLSAYDKALEDAQSAMKLDENFLKGYYRAAKCHLAMGSIKNAIMYLEKVLERDPKNKDAQNDL 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9487.16902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JK11_9PHAE3.380e-11376.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V1NCR2_HETAK8.080e-5243.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XUE6_9STRA4.570e-4237.82Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z8N5_9STRA2.580e-3737.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SEB7_9STRA9.520e-2935.38Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A1V9Y8G7_9STRA3.850e-2328.18Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A3M6TYP9_POCDA2.000e-742.86Uncharacterized protein n=2 Tax=Pocillopora damico... [more]
B3MUJ5_DROAN2.890e-742.86Stress-induced-phosphoprotein 1 n=3 Tax=ananassae ... [more]
A0A2B4S127_STYPI3.080e-735.00DnaJ-like subfamily C member 7 n=1 Tax=Stylophora ... [more]
UPI001CF165075.330e-744.59dnaJ homolog subfamily C member 7-like n=2 Tax=Acr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9487contigH-elongata_contig9487:153..8917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score276.2
Seed ortholog evalue1.2e-71
Seed eggNOG ortholog2880.D7FQ24
Preferred nameLONRF3
EggNOG free text desc.positive regulation of catalytic activity in other organism involved in symbiotic interaction
EggNOG OGsCOG0457@1,KOG0548@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-01_007750.1
Exons9
Model size2698
Cds size609
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931344.0157602-UTR-H-elongata_contig9487:152..1981622931344.0157602-UTR-H-elongata_contig9487:152..198Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9487 153..198 -
1691679798.140415-UTR-H-elongata_contig9487:152..1981691679798.140415-UTR-H-elongata_contig9487:152..198Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9487 153..198 -
1622931344.0342221-UTR-H-elongata_contig9487:222..21101622931344.0342221-UTR-H-elongata_contig9487:222..2110Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9487 223..2110 -
1691679798.150004-UTR-H-elongata_contig9487:222..21101691679798.150004-UTR-H-elongata_contig9487:222..2110Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9487 223..2110 -
1622931344.1529157-UTR-H-elongata_contig9487:7862..79281622931344.1529157-UTR-H-elongata_contig9487:7862..7928Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9487 7863..7928 -
1691679798.2404442-UTR-H-elongata_contig9487:7862..79281691679798.2404442-UTR-H-elongata_contig9487:7862..7928Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9487 7863..7928 -
1622931344.1638968-UTR-H-elongata_contig9487:8828..89171622931344.1638968-UTR-H-elongata_contig9487:8828..8917Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9487 8829..8917 -
1691679798.2485693-UTR-H-elongata_contig9487:8828..89171691679798.2485693-UTR-H-elongata_contig9487:8828..8917Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9487 8829..8917 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931344.0530233-CDS-H-elongata_contig9487:2110..22301622931344.0530233-CDS-H-elongata_contig9487:2110..2230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9487 2111..2230 -
1691679798.1580856-CDS-H-elongata_contig9487:2110..22301691679798.1580856-CDS-H-elongata_contig9487:2110..2230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9487 2111..2230 -
1622931344.0670323-CDS-H-elongata_contig9487:4218..42851622931344.0670323-CDS-H-elongata_contig9487:4218..4285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9487 4219..4285 -
1691679798.1691675-CDS-H-elongata_contig9487:4218..42851691679798.1691675-CDS-H-elongata_contig9487:4218..4285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9487 4219..4285 -
1622931344.082618-CDS-H-elongata_contig9487:5119..51901622931344.082618-CDS-H-elongata_contig9487:5119..5190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9487 5120..5190 -
1691679798.17795-CDS-H-elongata_contig9487:5119..51901691679798.17795-CDS-H-elongata_contig9487:5119..5190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9487 5120..5190 -
1622931344.0972908-CDS-H-elongata_contig9487:5616..57311622931344.0972908-CDS-H-elongata_contig9487:5616..5731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9487 5617..5731 -
1691679798.2000196-CDS-H-elongata_contig9487:5616..57311691679798.2000196-CDS-H-elongata_contig9487:5616..5731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9487 5617..5731 -
1622931344.1101058-CDS-H-elongata_contig9487:6115..62071622931344.1101058-CDS-H-elongata_contig9487:6115..6207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9487 6116..6207 -
1691679798.2148106-CDS-H-elongata_contig9487:6115..62071691679798.2148106-CDS-H-elongata_contig9487:6115..6207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9487 6116..6207 -
1622931344.1222174-CDS-H-elongata_contig9487:7122..72011622931344.1222174-CDS-H-elongata_contig9487:7122..7201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9487 7123..7201 -
1691679798.2234511-CDS-H-elongata_contig9487:7122..72011691679798.2234511-CDS-H-elongata_contig9487:7122..7201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9487 7123..7201 -
1622931344.1385033-CDS-H-elongata_contig9487:7797..78621622931344.1385033-CDS-H-elongata_contig9487:7797..7862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9487 7798..7862 -
1691679798.2322476-CDS-H-elongata_contig9487:7797..78621691679798.2322476-CDS-H-elongata_contig9487:7797..7862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9487 7798..7862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9487.16902.1prot_H-elongata_contig9487.16902.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9487 2111..7862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9487.16902.1

>prot_H-elongata_contig9487.16902.1 ID=prot_H-elongata_contig9487.16902.1|Name=mRNA_H-elongata_contig9487.16902.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=203bp
MGERSLAMETYRHALDTDPKNKWLQEQVNLAKAEVVNGSKLEPVASLDAW
ITVFEAMEDSRQRLSTLAHMWNQCALPDRLQIFGAFLLLISGTGAHTEDF
TEEMMVSLPMDNYEDLKPVETWMAFFEALNREDKVEGFKRMWEVAEDLEK
NVIVNDLRHFFLEPLVNAGLPQGDDENDLEEEGDGAKDPPSKREPAPAEI
TE*
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mRNA from alignment at H-elongata_contig9487:153..8917-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9487.16902.1 ID=mRNA_H-elongata_contig9487.16902.1|Name=mRNA_H-elongata_contig9487.16902.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=8765bp|location=Sequence derived from alignment at H-elongata_contig9487:153..8917- (Himanthalia elongata Himel1 dioecious)
GCGAGGATGCGCCCCACACCCTCTTCGGGAACCGAGCGGCGGCAAGACTG
AGCCTCGATAGGCCTCAGGAAGCGCTAGAAGACGCAGAGGTGCGGAACCA
AAACACGCCTCGACGGGCCCCCCAGTTCTAGCGATATATATATATATATA
TGTATATGTATATATATATATCCCATTGCGCGCTGCTGCTACCGCCTGTT
ACTGCCCCTGACTGTGGTCTATGACCCTCTAACGGGCTGCTCTATGGGTG
TTTCTTTTTTTTCTTGATTCCTTTTATGCATGTTTGCTAACAATAATTAA
AATGTTTCTAAAATAGTACTGCAAAATCCCATCTAGGTTTGGCTTCTAGA
AATGACGATACATGTACAATGCAACCATGTGCAAAATATGACTAACTTTT
CCTAACCACAAGAGTTCACTGTATAGACTATAGTATAGTATAGTCTAGTC
GTCATAGTAGTCTGGTTTGGCGTCATAGTCCCCACATGATGACGTCATGA
TCAGTAATAGTGGAAGTGTACGGGATAATAATAGGATCCTCGACATTAAG
CCTTCGACCTGATGAATTTACTATTGGGGAACACGAATAATCACATTTGA
CGATTTTGTGCTCAGAGATAGTAATGTACACACTCGAAGCTGACGATAGT
TGGTCCCCTAGACTGCACCCCTCACGGTGCTAAGAAGGCGTGGATGTTCG
GAGGGTTGGGATGAGATGATTTTATACGTTTTAAAAGAAAAATTGCCACA
GACGGCGCTTTTCATGCGTGTGTGGGTGGAGGGGAAGGGGACTAGGGACA
GGACAGAAGAGGGACACCCCCCAAGATTTGTACTTCAGGCGTCAAGTAAC
CCAATATATTTTTGAGATCAGAGAGCGATCCCCGTTTAGCTTTAATCTTA
ACGCCAGAGAGGCGTTTACTTCCGCCCCGTTTTCTCGCTCCTATTTAATG
TTAACTGATGTTCCGCACCGTCGCCACCGCTGCCGCTAGACTGCGATAAA
AAAGGACGGTACGTGGCTGAAGGGTTACCACCGAAAGGCGTGCGCGCATC
AGGCCATGGGGGAGAGATCGCTGGCTATGGAGACGTACCGCCACGCCCTC
GATACCGACCCCAAGAACAAGTTGAGAAGCGTGCGCCACCGTGGTCGGTG
TGGCTGGGGAGGCGGCGGTCGAAGAGGCTCCCCGCGATCTGCAGACAGCG
GACAGCGGAGAACGCTACGTACTGTTTACATTAGTAGTGGCGTGCGCACA
GTACATTCAATGCCTCCTCTCGATGTCGTTCGTCGCCGCTGCCTCTGCCC
CCGGGCCGAGAGATTGAACTGCCATATAAATCGGCCGAATCGTAGCTATC
GTAGAGAGCCGCGCGGGCAAGCATTTTTGTGGTGTGTTGTGTTGTGCTTT
GTTGTGTGTGTTTTATGTCCATGAGGCGGGGGGAAACGTGTGTTCCCTCT
CCCAGTCCTCTCTGGCACGAGGATTCTTTTTTTGCCGACGAGAAACTTTA
TCGATTAATCATAATTGTATTGCATTGAGTTAGCGCGCGTTGTTCTTGTA
TCACCCGCGCCTTCCTCCGGCTGCGGCGGCTGTCCTTTCCACCCTTTCCA
GTACTGAAACGAAGACATTTTTGTGTTTAAAATCGAACATTTGCTTTCTC
GTGAATACTCTTTGTTCGTGTGTTTTTTTACGCCTTTCGTTCTCTGATTC
TCTTCTTACACACAAGGTGGTTGCAAGAACAGGTTAATCTCGCGAAAGCC
GAGGTTGTGAACGGGAGCAAGCTCGAGCCGGTAGCCTCCCTTGACGTGAG
CCCGGACACAACCCCCCCACACCCCACACCACCGACGACCCGAGAGCGTA
CCCACCGATCAACTCACGGAAACGANNNNNNNNNNCACCCCCCATGCTGT
TTGATGTATGATGTATTAATAGCTGTATTCTCTGGAATGATAAGCGTGCC
TCCTGTGTCTGTTTGTTCATCTGTTTCTCATTAAGCGTCATTGTTTCTGT
GTAAGCGTCGATGTTTGAGTGTAGTTTTTCATGAAATTGCATATAACCGT
GCATTCCATCCCTGTCATGCTATGTACTCATTCTATTGTCCTCCCAATGG
GATACAAACGAGAAGTGTGTGTGTGTGTGTGTGTGTTTGTGTGATTAAAT
TGCACAAAATCGCGCAATCCGGCCCTGTCATGTGTCTTGTCTCTGTGTTT
GCTTTGGATTTTATCTAGACCGAGAATGCCAGTAAAAGACAGAGTCGACG
ACCGCTCTCGCACCGCCACAGTAGGATGCGTAGAGCTACTGCTGTTTGTA
GGAGGATGGCAATTGACCAAGATCGGTTTACTTCCCTCGCTGCCGCGCTA
TCCCCTTAAACCCTTATTCCATTACTCCATCAAACATGCAGTAGCGGTAG
CGGACCTGAAAAGAGAAGACTATTCTTGAAAGTGCAAAGATCGGGAATCG
CGCACACGCCGTGTCATGCCGTGTCATCCCCCCAAACCATTTATTAATAG
CAGTGACGGATGTCGTGAAACAGTATAGAAACGATCTACTTCTTATTTTC
TTTTTCTTTTTTCGGTCACTAATGTCTTGTCTTGTCTTGTCTTGTTTTTT
AGTCCGGCGCTTGCTGTAATGGCCTGCACCACCTCTTCCATATCAGGCCT
CTCCTTCCTGCGGATTAATATCAGGTAGTACATGTTTGTTTCGTGTGTCT
TCATCCGTAGGCGTGGATCACCGTTTTCGAGGCGATGGAGGACTCCAGGC
AGCGACTGTCGACGCTTGCGCACATGTGGAATCAATGCGCGCTACCAGAC
AGGTAGGTAACGTACGGTTTTGCTTCAGCAAGTAGACAAATGGTATTTTA
TAAACCCGAGTGCACCAGAAAATGCCGTCTGTCATCAAGTACCCAGGGCC
GCCGTAGAAAAAAACGTTCGGCCCTTTCGATGGCGTAAAATCGGCAACCG
CCGCGCCCTCTCTCCCTACCCCGCCCTTTCGAGGACGCGTGGTCAACGGT
CTAACAGTTAAGGCACGCGAAGCTTGAGCTCGCCCTCTCCCCCCTAGATA
ACGCCCCCTCTCCTCTCCCCTCCCCCCGTTTTTCGTTGTACCATATCTCC
ACCCCCCACCGCTTGCCGCCCTTCCCTTGACCGTGACTTTCATCGGGCCA
CTTACGCCGCGGCGATCCTCCGGGATCCCGTATCAGGCTCCAAATCTTCG
GAGCGTTTCTGTTGCTTATCTCCGGCACGGGGGCTCACACAGAGGATTTC
ACGGAGGAGATGATGGTTTCGCTTCCAATGGACAACTATGAGGACTTGAA
GGTGGTTCAGGGCGGGGGGAGGGAGGGGGAGGGGGCGAGAGACCCGGCGT
CACACGAAATGTTGTTGGGTATGTTGTTTGCAGTCGCTGGTTTTGGCGGA
TGGGAGGTTTTTGTCTGTTTTTGTGTCGAGGTTTTATGTTTGCGCTGTTT
TACCTCCTGTGGGGGAGTTTTACAGTTTTTGCGTGGCTGGGGATGTTGCA
TGTAAATTGAGCAGCGCGCCGGAGTGAACGTGTGCTGTGGAGGCGTTTTG
TGGGTGGATTGGAGTTCCGTTCGTCCCCGTGGGTTACTTGTTCGATTTTG
TGTGCCTGTTACTGCAGCAAATAAGCTGGGTCACGTCTAGTATAAGTACA
TGCACGCTTCGCGCTCTAGATGGGTTTTCACTTGACGTACACGCCTCTGT
CTCTATGAAAACCTCGTACTCCCACAGCCGGTGGAAACGTGGATGGCGTT
CTTCGAAGCACTCAACCGCGAGGATAAAGTGGAAGGATTCAAGCGAATGT
GAGCTCCCCACGTTCTCCAACAATCAAATTATATTCGGTAGCGTTGGGCG
GAGGGGTTTCGGTGGAAGGCGGGGGACGGGGGACGGAAAGGGAGTCTTGC
GAAGCGTAAGAGGGGACTCGCTTGAATGCCTCTTCCTCGCGGTCTTTGTT
TATTCGATACGTGATGACGGTAATTCTGTCACCACACGCAGAGAATGCTC
GTCACGGCTGCAGACTGTTTGAAGTGTCCTGAGTCTTCGGTCGGTCGGTC
GATAGCACGATGCCTCCCTCGGGTGACGCTTGAGCCATAAATCCCTGAGG
CGTTTCCACTGTCTAATGGGGATAATGTAGAGCTTACCACGAAGAATATT
AAACATGGGTATAACTTAGTCACGGTGTCGCGGCGAGTGATGACGTGAGG
CAAAACTACAGCAGTATCTCGCAAGGGGTGGGGGGAGCGCTTACTCAAGA
CTTGAGTTTAATATGTTAATATGTTAGCTGTTTGGCCACTGACCACGCAT
TTTCTGGAGGACGGAAAAGTTTGTTTTTTTAATGGATTGTTGGTGTTTTT
CGTTGCTGACCTAATAATTTATTCTCAATTCTGTGTTTACCTCTCGCTAT
TAAAAAGCAGGCGAGAGGATGGGCGTGGGAAAGGCTAACGTAACTCCAGT
ACCGCAGACGTCTTATGTTGAGCTTTGCAACGTACCACAGCCGGGACACT
TAGGGTAGCGTCTTGAGCTTTCCGCTTCAGTTGTGGTAAAACGAGAGGTT
TCCGATTACATTGATACACTACCTGTGACGGCGACAAAATTTTCCGCGTT
GCGCGAACGTGTCTTTTCCTTTTTCGGAGCAGGTGGGAGGTGGCCGAGGA
CCTCGAAAAAAACGTGATCGTGAACGACCTCCGGCACTTCTTCCTAGAGG
TACGCTATTCATATGACGTCATATGACGTCACATCTAGCCACATCTAGTC
AGGTTGGTAATAACGGCCATTGGAGGGGAGAGGAGGTTAGAGGAGGGTAC
TTATCTTCGCGCAAGTCATATTCTGACGCACATCAACCATGGTCACATCA
ACCATGGTAGGTATTCCAGCAAGTGCCGGAACAGAGCGATTTTTGTCTAT
CGGGTTTTCCACAGCCAGGCCAACGCCATACTATACTATACTATACTATA
CTGTACTATTTTATTTTATTTTTCCAAACGAGCAGCGCGCGGAGCTGGTG
GGGAGGGGGGGCTGCCAGACTTTGAAAAAAATCAAAAACTTTTTCCACCG
TGTAGAGTAGTTTTTTAGGGTTGGCAAGCAATGCGCTGAATGTGAGAAAA
AACATATCCCGCGAATCATCTACCCCCTCCAGATTTTTCTTAATCCTCGT
GCTGCTGCTGCTGCCACCAGTCTGCTGCTGTGTCTTCAAGAACCGATCTC
GCTTATTCTTGAGGGCTCTCTGTGAGCCATCTCAACGGCTTTCGAGCTGA
AAGTATCTTCAGTGTTCGCAACGAAGGCTTGCGCTTTGTTCGACGACCTG
TTGGGGTTCCTCTTGTCGACCAGCTTCGTGACCAACACCACTCCACCGTA
CCAACATCACTTTGTCGTGGGCAGCGTCGAGCCTCCAGTTGTGCTTGATG
ACGTGTTTATCTCTCCCAAGAAAGACGACACGATCACATGGTTGAGCCTC
TCGTCAGCTGAGTTTTCGTCCGAAAAACTTTCTGAGTGGCTCTGCGCCCC
CTAAATCGGCCAAGCGGAAGCGGAATCGATTGCCGAGGTGTACAAAAAAA
CAAAGGTTCGGGAATACGACGAAAAAAAAATGCGGCAATCCTGAACTTTT
TTTTTCTGTACAATTTTCTGGATGCGTTTTCGAGTGTTTTCAGAGCGAAC
CAAAAACTCGATTTTCGATTTTTGTTTTGTTTTTCAGGTGAGGAGGGACA
ATATCGTCTAACTGTGGATGTCGTCTTTATGATGGGTACCGCAAATGGAA
TTTGATCTCCGTGCGCGCGAATTTCAAAAGCGCCGCACCCTGACAACATG
CACAATGATATGGCATGGCATGTGGTGTGTGATTATTAGATGATTGATCT
TGAGGATTTCCAACAACCATTGTTGAGAGGCATTATGGTGTGTTTCTCTC
CTTTATGGAAAAATCCTAGACTGACTCTTTGATCGAGGTCGCTGAGATGA
TGGGACATACTGCATGAACCACTCCATGCCCGTGTGCTTGTGTTAAATGC
GTGTCATATCATCACGAACCCGAGCTTTCGGCGGCCAGACTTGGCATTTC
ATAAGGATTATATATATTTTTCGTCATCATCCTTGCCTTTGTTGCACCAT
ACCGGAAATGACATGTCATACCATACCATACCATACCATCGGTTAGTAAG
ACATATCAGGCATCCGAATGTTGGCGATTATTACCGAATATAGTATAGTA
CAGTATAGTATAGTACAGTATAGTATAGTACCGCAGGGGAGGGGATAAGA
AAGGGGCGCTCAACCAAACGCCTCATTTTTCGTGGCCAAGCATCGTAGGT
ACTCTTAATTAGGCCGTCGACGATGGTCTAGTTCGTGGAGGGTTTATCGC
GATGGTGTGCTCAAGCTGAGCTGCGCGAAAGGTTTTCACGAGTGGCACCG
GGTTGTAAGGGAATATACATGGTGTTTCTAAAGAGGAACATACTATAATA
GTAATAGTCTAATAACGCAAAAATAATCGCTCTCACCCTGCCAACATTAA
ATCGATATGACATGACATGACATTGTAGCAGATAATTACCTTAAACGCAA
AAGGCTCTTTTTATGCGTCTGGAGCCCCCCCCCCGCCCTACTCCCAACCT
CCTCTGTTGTTTCTGTAAGCAGTTCTAACTCATTTTCTCCCGACCTTTGT
TTACCGTGTCTTTTGATACCGTCCCCGCTCCATCCAGCCTTTGGTGAACG
CGGGGTTGCCACAGGGAGATGACGAAAATGACTTGGAGGAAGAGGGAGAC
GGGGCGAAGGATCCACCATCCAAGAGGGAACCGGCGCCGGCGGAGATAAC
CGAGTGAACACGGAAGAAGCGGTCCAACGAGGGAGCAGGGTGTACTCAAG
TTTTGCATGCCTTAGCTGTAAGACCATTGATCACGCGCCCTTGGGAGGGC
TTGCAGAAGGGGGGGGGGAAGGGGAGAGAGGCAACACGATCGTGTTATAC
AGTAGTGCTGTTTTTTTCCGTAAATTTTCCCGAGCGCGCACGTCAAAGCT
CGACTGGCGCTGGTGTAGTGTTTTGCGGCAGGTCCGTAATGTTTAGCGTA
ATACCGCCGTCTCTCCCCTCGAAATCTCGTCGTTTGTCGTTCATTTGCAA
GGGCTCTGGCGCGCGCGCCTGGTCCGGTTGTGCTTTCGTCTTTCCGCATG
AGTGAGATCTCTAGATCTAGATATGACACGAACACGATGCAAGAATACCC
CAGCTTGATCGTAGGCGATTGCGATTGCGTGCTTTTTTTCTCCATATAGA
AACACAAAACTAACTCATTTCGTATTGTGTGTTTTTCGTCCCGGAACTTG
TAGCCTTCGGGGGTTTAGTGAAATATTTTGTTATTTGTATTGTACGTTAA
GTTTCCACTGCGTGAAGGGTATGTGAATTTGTGGCAAGTTTCCCAGTCGT
TTTTTTTTTCGCCCCGTAGTTCGTTTTTGAATGTTGGGTGAAGGTAGGCA
AAGTGACAGTAACGTCAAACGAGAGCAGGGCTCGTGTTGGACGCGCGTGT
TTTTCTTCTAACATCGTACTTTTGTAACAAACTTTGTGGCGTTTTTTTGT
CCAACGCTTGTAGGTTGCGGTAATCTCGGCTGCTCTTCTTAACCGTGATA
CCGAGGGTAGATTTGTGGAGATCCTTGTTCCTGGTACAGTTTAAAAGTGG
GCGTGGTTTCCACGATCGTTGGAGGCGTTTGTTTCGAGTGCATTGAAAGA
ACGAACAAAACGATCTCCGAGCCCATACAGTGTAAGATAAAGCAACAAGC
TCGAAAACTCCAGATGTTGCTAAGTATGATGAGGATGGTGTTTTCGATGG
TGGGCTCGATGGGAAGGTGTACTGCGCCGGGTTTTCGTGAAGCCTGCGCT
TTACCGCTCACCCATAGGGCTAAATTACCTTACCTGGGTGCTGTATTGTT
AGGTAGTAGATACTGGTCGATACAAGATACAAGATACTCCGACCAACGCC
GGGTGGGATGGAGCTGGGGTGGGATGGGTACACACGGTCTTATTCAAATC
TCTCTCTTTCTTTCTCAGGGGGTGTTGTCCTCGATCTCCGCGAGGCATGT
GTTGATTCTGCACGCTAGCCTTTGACATATAATGAGAGTGACGGGATCGG
GGTAGGCTCACACAATGGTGTGGTCCACTTGCTAAATAGGTAGTTTGTTG
GATGCGATCACCAGCCAGCGCCAAATCTGCTACGACGAACTATGCAGCGA
CCTCGATGGGGAACAAGCACGAGGTGTGATTAAAACTGAAATAGCACCCT
TTTTTTCTCTCCCCAATTCTGCCTATGGACCCTCCAAGATGGCGTTATTT
TACCAGTACCTATTATGTCGCTACGCTTTTACCCATCTCTCGCCTCTCGC
CTCCGGTGCCCCGATCCCATCCATGCCTTCTATTATTTTTTTATCGCGAT
GCATGTTTAGCTTTCCTGCCTGCAGCACCTCGTCGGTCATTATTGGTTGA
ACGTTTCTTAGTCCCTTTCCCCTCCGTTACAGGCAAAAATAAATTTAAAA
AAACATCCCGGTGGCTTCCGCATTTTAGTAGTTGCAAATTATACTGCTAA
AATATCTCGGGTGAAAACAAATAAAAGCCCGTAATTTGCGATATATATAT
ATATATATATATTTACATACTAACGTACCACACACAAGGGAAAACAAATG
CAGTTTACTCTAATCAACGCAGCAGAGAACCCCTAAATGCAGGACGCACC
TGCAAGCGCATTTGTGCAGGACGGAGAAATAGGGTTAGGGGGTCGGGTCT
ACCAAAAACTTAAGA
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Coding sequence (CDS) from alignment at H-elongata_contig9487:153..8917-

>mRNA_H-elongata_contig9487.16902.1 ID=mRNA_H-elongata_contig9487.16902.1|Name=mRNA_H-elongata_contig9487.16902.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1218bp|location=Sequence derived from alignment at H-elongata_contig9487:153..8917- (Himanthalia elongata Himel1 dioecious)
ATGGGGGAGAGATCGCTGGCTATGGAGACGTACCGCCACGCCCTCGATAC
CGACCCCAAGAACAAATGGGGGAGAGATCGCTGGCTATGGAGACGTACCG
CCACGCCCTCGATACCGACCCCAAGAACAAGTGGTTGCAAGAACAGGTTA
ATCTCGCGAAAGCCGAGGTTGTGAACGGGAGCAAGCTCGAGCCGGTAGCC
TCCCTTGACGTGGTTGCAAGAACAGGTTAATCTCGCGAAAGCCGAGGTTG
TGAACGGGAGCAAGCTCGAGCCGGTAGCCTCCCTTGACGCGTGGATCACC
GTTTTCGAGGCGATGGAGGACTCCAGGCAGCGACTGTCGACGCTTGCGCA
CATGTGGAATCAATGCGCGCTACCAGACAGGCGTGGATCACCGTTTTCGA
GGCGATGGAGGACTCCAGGCAGCGACTGTCGACGCTTGCGCACATGTGGA
ATCAATGCGCGCTACCAGACAGGCTCCAAATCTTCGGAGCGTTTCTGTTG
CTTATCTCCGGCACGGGGGCTCACACAGAGGATTTCACGGAGGAGATGAT
GGTTTCGCTTCCAATGGACAACTATGAGGACTTGAAGGCTCCAAATCTTC
GGAGCGTTTCTGTTGCTTATCTCCGGCACGGGGGCTCACACAGAGGATTT
CACGGAGGAGATGATGGTTTCGCTTCCAATGGACAACTATGAGGACTTGA
AGCCGGTGGAAACGTGGATGGCGTTCTTCGAAGCACTCAACCGCGAGGAT
AAAGTGGAAGGATTCAAGCGAATCCGGTGGAAACGTGGATGGCGTTCTTC
GAAGCACTCAACCGCGAGGATAAAGTGGAAGGATTCAAGCGAATGTGGGA
GGTGGCCGAGGACCTCGAAAAAAACGTGATCGTGAACGACCTCCGGCACT
TCTTCCTAGAGGTGGGAGGTGGCCGAGGACCTCGAAAAAAACGTGATCGT
GAACGACCTCCGGCACTTCTTCCTAGAGCCTTTGGTGAACGCGGGGTTGC
CACAGGGAGATGACGAAAATGACTTGGAGGAAGAGGGAGACGGGGCGAAG
GATCCACCATCCAAGAGGGAACCGGCGCCGGCGGAGATAACCGAGTGACC
TTTGGTGAACGCGGGGTTGCCACAGGGAGATGACGAAAATGACTTGGAGG
AAGAGGGAGACGGGGCGAAGGATCCACCATCCAAGAGGGAACCGGCGCCG
GCGGAGATAACCGAGTGA
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