mRNA_H-elongata_contig94856.16899.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94856.16899.1
Unique NamemRNA_H-elongata_contig94856.16899.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig94856.16899.1 vs. uniprot
Match: D7FLR4_ECTSI (Formylglycine-dependent sulfatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR4_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 2.160e-43
Identity = 71/91 (78.02%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:    1 PNVFFFLIDDMGHADIGYQSTDLREITPNLDALAAGGIKLSNYYSMSICTPARASLMTGRYPVRLGMQYTVISPGEPWGLPLDEKVLSVFI 273
            PNVFFFLIDDMG  D+GYQSTDL EITPNLDALAAGG+KLSNYY+M++CTPARAS+MTGRYPVR GMQY+VI PG PWGLP  EK+L  ++
Sbjct:  217 PNVFFFLIDDMGFGDMGYQSTDLSEITPNLDALAAGGVKLSNYYTMTLCTPARASIMTGRYPVRYGMQYSVIMPGSPWGLPTSEKILPEYM 307
[Close]
BLAST of mRNA_H-elongata_contig94856.16899.1 vs. uniprot
Match: A0A6H5K4V1_9PHAE (Sulfatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4V1_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.980e-40
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:    1 PNVFFFLIDDMGHADIGYQSTDLREITPNLDALAAGGIKLSNYYSMSICTPARASLMTGRYPVRLGMQYTVISPGEPWGLPLDEKVLSVFI 273
            PNVFFFL+DDMG  D+GYQSTDL EITPNLDALAAGG  LSNYY+M++CTPARAS+MTGRYPVR G+QY VI PG PWGLP  EK+L  F+
Sbjct:  189 PNVFFFLVDDMGFGDMGYQSTDLSEITPNLDALAAGG--LSNYYTMTLCTPARASIMTGRYPVRYGLQYAVIMPGSPWGLPTSEKILPEFM 277
[Close]
BLAST of mRNA_H-elongata_contig94856.16899.1 vs. uniprot
Match: D7G1A6_ECTSI (Formylglycine-dependent sulfatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1A6_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.260e-38
Identity = 65/91 (71.43%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 PNVFFFLIDDMGHADIGYQSTDLREITPNLDALAAGGIKLSNYYSMSICTPARASLMTGRYPVRLGMQYTVISPGEPWGLPLDEKVLSVFI 273
            PNVFF +IDDMG  DIGY STDL  +TPNLD L+A G+K+S YYSMSICTPARA+LMTGRYPVR G+QY VI PG PWGLPL EK+L  ++
Sbjct:  112 PNVFFIMIDDMGWNDIGYHSTDLANVTPNLDRLSASGVKVSQYYSMSICTPARAALMTGRYPVRYGLQYNVIQPGAPWGLPLTEKLLPEYM 202
[Close]
BLAST of mRNA_H-elongata_contig94856.16899.1 vs. uniprot
Match: A0A6H5JIE9_9PHAE (Sulfatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIE9_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 3.590e-36
Identity = 60/91 (65.93%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 PNVFFFLIDDMGHADIGYQSTDLREITPNLDALAAGGIKLSNYYSMSICTPARASLMTGRYPVRLGMQYTVISPGEPWGLPLDEKVLSVFI 273
            PNVFF ++DDMG  DIGYQS DL+ +TP+LD LAAGG+K++NYY++ ICTPARASLMTGRY  R G+QY+VI PG PWGLPL EK+   ++
Sbjct:  152 PNVFFIMVDDMGWNDIGYQSVDLQGVTPHLDRLAAGGVKMTNYYTLPICTPARASLMTGRYVFRYGLQYSVIQPGAPWGLPLTEKIFPEYM 242
[Close]
BLAST of mRNA_H-elongata_contig94856.16899.1 vs. uniprot
Match: A0A6H5L6W1_9PHAE (Sulfatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6W1_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 4.930e-36
Identity = 63/88 (71.59%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    1 PNVFFFLIDDMGHADIGYQSTDLREITPNLDALAAGGIKLSNYYSMSICTPARASLMTGRYPVRLGMQYTV-ISPGEPWGLPLDEKVL 261
            PNVFF +IDDMG  DIGYQS DL+ +TP LD LAAGG+K++NYY+M+ CTPARASLMTGRY VR GMQY   I+PGEPWG+PL EK+L
Sbjct:   60 PNVFFIMIDDMGWDDIGYQSVDLKRVTPVLDKLAAGGVKMTNYYTMNTCTPARASLMTGRYTVRYGMQYNAAINPGEPWGVPLSEKML 147
[Close]
BLAST of mRNA_H-elongata_contig94856.16899.1 vs. uniprot
Match: A0A6H5JFF9_9PHAE (Sulfatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF9_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 6.650e-36
Identity = 63/91 (69.23%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    1 PNVFFFLIDDMGHADIGYQSTDLREITPNLDALAAGGIKLSNYYSMSICTPARASLMTGRYPVRLGMQYTVISPGEPWGLPLDEKVLSVFI 273
            PNVFF +IDDMG  D+GYQSTD+  +TPNL+ LA  G+KLS YYSMSICTPARA+LMTGRYPVR G QY VI  G PWGLPL EK+   F+
Sbjct:   97 PNVFFIIIDDMGWNDMGYQSTDMHAVTPNLNRLAESGVKLSQYYSMSICTPARAALMTGRYPVRYGFQYDVIHMGAPWGLPLTEKLFPQFM 187
[Close]
BLAST of mRNA_H-elongata_contig94856.16899.1 vs. uniprot
Match: D8LRL9_ECTSI (Formylglycine-dependent sulfatase, C-terminal Formylglycine-dependent sulfatase, N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL9_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 2.520e-32
Identity = 58/85 (68.24%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:   19 LIDDMGHADIGYQSTDLREITPNLDALAAGGIKLSNYYSMSICTPARASLMTGRYPVRLGMQYTVISPGEPWGLPLDEKVLSVFI 273
            +IDDMG  DIGYQSTD+  +TPNL+ +A  G+KLS YYSMSICTPARA+LMTGRYPVR G QY VI+ G PWGLPL EK+   F+
Sbjct:    1 MIDDMGWNDIGYQSTDMHAVTPNLNRIAESGVKLSQYYSMSICTPARAALMTGRYPVRYGFQYKVINVGAPWGLPLTEKLFPQFM 85
[Close]
BLAST of mRNA_H-elongata_contig94856.16899.1 vs. uniprot
Match: A0A7S2D7A6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D7A6_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.350e-29
Identity = 48/90 (53.33%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:    4 NVFFFLIDDMGHADIGYQSTDLREITPNLDALAAGGIKLSNYYSMSICTPARASLMTGRYPVRLGMQYTVISPGEPWGLPLDEKVLSVFI 273
            ++ F L DD G  D+GY S DL  +TP LD+LA  GIKL  YY   +CTPAR +LMTG+YP+ +G+ + VI P  PWGLPL EKVL  ++
Sbjct:   65 HIVFVLADDQGFNDVGYSSNDLEGLTPTLDSLAGQGIKLMQYYGQQLCTPARGALMTGKYPIHIGLHHDVIHPDAPWGLPLKEKVLPEYL 154
[Close]
BLAST of mRNA_H-elongata_contig94856.16899.1 vs. uniprot
Match: A0A7S2V1D9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1D9_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.190e-28
Identity = 47/91 (51.65%), Postives = 66/91 (72.53%), Query Frame = 1 
Query:    1 PNVFFFLIDDMGHADIGYQSTDLREITPNLDALAAGGIKLSNYYSMSICTPARASLMTGRYPVRLGMQYTVISPGEPWGLPLDEKVLSVFI 273
            PN+ F LIDD G+AD G +S DLR + PNL+ L   G++L NYYSM  CTPARA+L+TG+YP+ +GMQ   +   +PWGLPL+ ++L  ++
Sbjct:   70 PNLVFILIDDQGYADFGSRSEDLRALMPNLNWLEREGVRLENYYSMHTCTPARAALLTGKYPMHMGMQGVSLEIADPWGLPLEHRLLPQYL 160
[Close]
BLAST of mRNA_H-elongata_contig94856.16899.1 vs. uniprot
Match: D7FLS1_ECTSI (Formylglycine-dependent sulfatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLS1_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 5.750e-27
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    1 PNVFFFLIDDMGHADIGYQSTDLREITPNLDALAAGGIKLSNYYSMSICTPARASLMTGRYPVRLGMQYTVISPGEPWGLPLDEKVLS 264
            PNV F LIDD+G  DIGYQSTDL E+TP +D+L++ G++L+ YY+  +CTP+RASLMTGR   R GMQY V+     WGLPL+E  L+
Sbjct:  120 PNVIFILIDDVGTNDIGYQSTDLWELTPFMDSLSSEGVRLTKYYTNQLCTPSRASLMTGRDTFRTGMQYEVVEDSGAWGLPLEEVTLA 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94856.16899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLR4_ECTSI2.160e-4378.02Formylglycine-dependent sulfatase n=1 Tax=Ectocarp... [more]
A0A6H5K4V1_9PHAE2.980e-4075.82Sulfatase domain-containing protein n=1 Tax=Ectoca... [more]
D7G1A6_ECTSI2.260e-3871.43Formylglycine-dependent sulfatase n=1 Tax=Ectocarp... [more]
A0A6H5JIE9_9PHAE3.590e-3665.93Sulfatase domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5L6W1_9PHAE4.930e-3671.59Sulfatase domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JFF9_9PHAE6.650e-3669.23Sulfatase domain-containing protein n=1 Tax=Ectoca... [more]
D8LRL9_ECTSI2.520e-3268.24Formylglycine-dependent sulfatase, C-terminal Form... [more]
A0A7S2D7A6_9STRA1.350e-2953.33Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2V1D9_9STRA2.190e-2851.65Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D7FLS1_ECTSI5.750e-2757.95Formylglycine-dependent sulfatase n=1 Tax=Ectocarp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94856contigH-elongata_contig94856:1..2034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue1.6e-30
Seed eggNOG ortholog2880.D7FLR4
KEGG koko:K01280
EggNOG free text desc.sulfuric ester hydrolase activity
EggNOG OGsCOG3119@1,KOG3867@2759
EC3.4.14.10
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03110
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size243
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94856.16899.1prot_H-elongata_contig94856.16899.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94856 31..2034 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931343.6691058-UTR-H-elongata_contig94856:0..301622931343.6691058-UTR-H-elongata_contig94856:0..30Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94856 1..30 +
1691679797.9798775-UTR-H-elongata_contig94856:0..301691679797.9798775-UTR-H-elongata_contig94856:0..30Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94856 1..30 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931343.7001781-CDS-H-elongata_contig94856:30..1171622931343.7001781-CDS-H-elongata_contig94856:30..117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94856 31..117 +
1691679797.992129-CDS-H-elongata_contig94856:30..1171691679797.992129-CDS-H-elongata_contig94856:30..117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94856 31..117 +
1622931343.726951-CDS-H-elongata_contig94856:1878..20341622931343.726951-CDS-H-elongata_contig94856:1878..2034Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94856 1879..2034 +
1691679798.0095878-CDS-H-elongata_contig94856:1878..20341691679798.0095878-CDS-H-elongata_contig94856:1878..2034Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94856 1879..2034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94856.16899.1

>prot_H-elongata_contig94856.16899.1 ID=prot_H-elongata_contig94856.16899.1|Name=mRNA_H-elongata_contig94856.16899.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MGHADIGYQSTDLREITPNLDALAAGGIKLSNYYSMSICTPARASLMTGR
YPVRLGMQYTVISPGEPWGLPLDEKVLSVFI
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mRNA from alignment at H-elongata_contig94856:1..2034+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94856.16899.1 ID=mRNA_H-elongata_contig94856.16899.1|Name=mRNA_H-elongata_contig94856.16899.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2034bp|location=Sequence derived from alignment at H-elongata_contig94856:1..2034+ (Himanthalia elongata Himel1 dioecious)
CCCAACGTATTTTTCTTCTTGATCGACGACATGGGCCACGCCGACATCGG
CTACCAGTCCACCGACCTGCGAGAGATTACCCCCAACCTCGACGCATTGG
CAGCAGGCGGTATCAAGGTGGGGAGGGAGTTTGTTGATCAACGTCTTTAT
TCATAGTATATAGTGTATTTAACGAAAGATAGGGGAGGGTGAGGGGTGTT
AATGTTAAGGGCATGTCGTATACTATAAGGGAAATATTTACAGTAGCCCA
ACAATTTTAATATAAATGTTGAGACGGAGCGAGATGCCGGGTTTCCGCCG
GCCAGGCTGCGCTTTCTAAGGATGGAACCGGTTTGTATTGCTTGGTATCC
CAAATCGGGTATGACATGACATGGGTTAATTGGATACTGGATACTGGATA
CTTCGGGTAGCCAATTGTTGCCCAACAATGCCGGCGGCTTTATTGACTAT
ATACTCCGAGTAGCTACCGCGAAGGGACTTCGACCTCCGCGCGAACGCAT
AGACAACAATACATCTAACGTTATATATTCCTAATATAATTTGCTCGTGG
ATACTCCTGGCCGAGTGCCTCTCAAAGGTATACGGTTGCTCTAGGGTTTT
TCTAACAATGAACCGTTGTTCCGCATGAATCCTTTAGAATGAGATGCGCT
TCAACTCTTTGGAGAGATACAATGATACTCTTCGACTGAGGGTCCTTGAG
ATTACAGGGTACAGCTCCATGACATTAAAGTCAACCCGGGGCGTTATCTA
GCGGAGGGGGCGTTCTCAATTTTTGCTCCGCATAGCGTATAAATTCCAGA
TTACAGCTTCATGTCACTTAACCCCTGTGGAACTCGATCTGTTTTTTGTA
ATTCTAAATTCAATATAAAACTTGAAATCCAGTTCCAGAAGGGTTTCCCG
GGGCGTTATCTAGGGGGAAGCGTACTCAATATTTGCATGCCTTAGCTGTT
AGCCCATTTGCCGCACATACTTTGGAGAAAGGGGACGGGGTATCAAAACA
TCCCCCCCGGCGATGACAGGTTCATGATTGCAATGGAGTTTATATAGAAT
AGAGAAGTTTATCTTGAGCGGGAGGAGAGGGTAGTTTCCAAATAGCCCAT
ATCCGCGATGGAATTTTAAATTAACTCGTAATGTATCGTCGCCTTATCAG
GGGCGCTTAGTTGCAATGCCCGGTGAACCCTCATCGCCTTATCAGGGGAC
TTATCAAATCACCCCCCCTCCATGTCCACACCCGCTCTGTCGTTGGTCAT
CCGGGATTTGGTACAAATCTCGTGGTTTGATTCGTCGAATGACAAATAAT
TATGACAGTCTCGGGACTTTGGGCTGGCGTCCGGCACCACATCTTTTCGA
TTATAGTTTAGATGCTTTCTTGTTTGTTGTTCTCTCCAGGTCTCGCGGGT
TCTTTTTTTCTTTTTTTCGACCCACCCCGAAAAATATGTACTTGATACCG
AGCACCCCAAGCCCTAAAAAAAAACGTAACTAAATAAAATAATACCGAAA
AAATATATAACAATAATATACTATTTCACTTTCCGCCGATGGGAGCCATT
ATCGATGTACTATATAGCTAGCTTACCAATCGACCCCCCACCATAACGCC
TCCATATATATCCCCGGAATTATAAAATAATAACTTAAATTAAATTAGGA
AGCCAACATTCGTAACAAAGAAAATAAAAGCACCTCGCAGGGGGAACTAG
CATGACTGTCGTAGCATGGCTGTCCTAGAACACCTTTAAACACAACAATC
GGTTGATGTGAAGAGAGGACACACGCAACTCGTCCCCCCCCCCCTACCCC
TCCCTATATATCACGAATGCCTCCAGATAAGCAACTCCCTCCCCCCTTCC
CCTCCCTATATATCACGAATACCTCCAGCTAAGCAATTACTACAGCATGT
CCATCTGCACTCCGGCAAGGGCTAGCCTCATGACAGGGCGATACCCCGTG
CGGCTCGGCATGCAGTACACGGTCATCTCTCCGGGCGAACCGTGGGGGCT
GCCGCTTGACGAAAAGGTGCTAAGCGTGTTTATA
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Coding sequence (CDS) from alignment at H-elongata_contig94856:1..2034+

>mRNA_H-elongata_contig94856.16899.1 ID=mRNA_H-elongata_contig94856.16899.1|Name=mRNA_H-elongata_contig94856.16899.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig94856:1..2034+ (Himanthalia elongata Himel1 dioecious)
ATGGGCCACGCCGACATCGGCTACCAGTCCACCGACCTGCGAGAGATTAC
CCCCAACCTCGACGCATTGGCAGCAGGCGGTATCAAGATGGGCCACGCCG
ACATCGGCTACCAGTCCACCGACCTGCGAGAGATTACCCCCAACCTCGAC
GCATTGGCAGCAGGCGGTATCAAGCTAAGCAATTACTACAGCATGTCCAT
CTGCACTCCGGCAAGGGCTAGCCTCATGACAGGGCGATACCCCGTGCGGC
TCGGCATGCAGTACACGGTCATCTCTCCGGGCGAACCGTGGGGGCTGCCG
CTTGACGAAAAGGTGCTAAGCGTGTTTATACTAAGCAATTACTACAGCAT
GTCCATCTGCACTCCGGCAAGGGCTAGCCTCATGACAGGGCGATACCCCG
TGCGGCTCGGCATGCAGTACACGGTCATCTCTCCGGGCGAACCGTGGGGG
CTGCCGCTTGACGAAAAGGTGCTAAGCGTGTTTATA
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