mRNA_H-elongata_contig94823.16893.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94823.16893.1
Unique NamemRNA_H-elongata_contig94823.16893.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig94823.16893.1 vs. uniprot
Match: D7FM35_ECTSI (tRNA-dihydrouridine synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM35_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 6.170e-29
Identity = 58/85 (68.24%), Postives = 70/85 (82.35%), Query Frame = 3 
Query:    3 VAGVMVGRASYYDPWAFRHTDSVIFGSTDPGFTRREIMERCIDRFEDYTREWQRESPEHHKTRDHVLGTLVKPLGYISSGTRVRR 257
            VAGVMVGRA+Y+DPW FRHTDS +FGS+DPGFTRREIMERC+DRF +  +E +RE PE ++TR   LGT+ KPLGY+SSG R  R
Sbjct:  237 VAGVMVGRAAYFDPWTFRHTDSAVFGSSDPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSR 321
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BLAST of mRNA_H-elongata_contig94823.16893.1 vs. uniprot
Match: A0A6H5JSP8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSP8_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.130e-9
Identity = 48/67 (71.64%), Postives = 52/67 (77.61%), Query Frame = 3 
Query: 1020 AVMLAPVA-----AVRSTVAG--AACVEDVCSG*KNEVIC-GACAAAVEVVVEEAEVLAVAFCSSCT 1196
            AVMLAPVA     AVRS  AG  A+CVE+VC+G K EVIC GACAAAVE VVE AEVLA AFCS+CT
Sbjct:    3 AVMLAPVAVPAPAAVRSAGAGVGASCVEEVCAGPKKEVICCGACAAAVEAVVEGAEVLAAAFCSACT 69
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BLAST of mRNA_H-elongata_contig94823.16893.1 vs. uniprot
Match: A0A6H5K7J4_9PHAE (Fructose-bisphosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J4_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.350e-8
Identity = 40/77 (51.95%), Postives = 48/77 (62.34%), Query Frame = 2 
Query: 1064 RSRLRRRRLLGLKERGDLWRLCCCGRSSCGRSGGTCGGILLFLHVHVVCWRSPCEVFPRTQRVCVVCDA-QGQMLSP 1291
            RSRLRRR  LGL E+ DL RLCC GRSSCGRSGGTC  ++       +  +       RT+RV VVCDA +G+   P
Sbjct:  217 RSRLRRRSWLGLNEQDDLLRLCC-GRSSCGRSGGTCNAVVCSSSCTFMLLKVSKHGVSRTRRVYVVCDAHRGRCRHP 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94823.16893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FM35_ECTSI6.170e-2968.24tRNA-dihydrouridine synthase n=2 Tax=Ectocarpus Ta... [more]
A0A6H5JSP8_9PHAE2.130e-971.64Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7J4_9PHAE3.350e-851.95Fructose-bisphosphatase n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94823contigH-elongata_contig94823:687..2513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue5.9e-26
Seed eggNOG ortholog2880.D7FM35
KEGG koko:K05539,ko:K05542
EggNOG free text desc.tRNA dihydrouridine synthase activity
EggNOG OGsCOG0042@1,KOG2335@2759
EC1.3.1.88
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontRNA-dihydrouridine synthase
Ec32 orthologEc-01_010520.1
Exons2
Model size1437
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94823.16893.1prot_H-elongata_contig94823.16893.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94823 701..1354 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931343.1440148-UTR-H-elongata_contig94823:686..7001622931343.1440148-UTR-H-elongata_contig94823:686..700Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94823 687..700 +
1691679797.7570465-UTR-H-elongata_contig94823:686..7001691679797.7570465-UTR-H-elongata_contig94823:686..700Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94823 687..700 +
1622931343.2100105-UTR-H-elongata_contig94823:1354..25131622931343.2100105-UTR-H-elongata_contig94823:1354..2513Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94823 1355..2513 +
1691679797.7976189-UTR-H-elongata_contig94823:1354..25131691679797.7976189-UTR-H-elongata_contig94823:1354..2513Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94823 1355..2513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931343.170229-CDS-H-elongata_contig94823:700..7791622931343.170229-CDS-H-elongata_contig94823:700..779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94823 701..779 +
1691679797.7688372-CDS-H-elongata_contig94823:700..7791691679797.7688372-CDS-H-elongata_contig94823:700..779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94823 701..779 +
1622931343.1941276-CDS-H-elongata_contig94823:1169..13541622931343.1941276-CDS-H-elongata_contig94823:1169..1354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94823 1170..1354 +
1691679797.7818835-CDS-H-elongata_contig94823:1169..13541691679797.7818835-CDS-H-elongata_contig94823:1169..1354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94823 1170..1354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94823.16893.1

>prot_H-elongata_contig94823.16893.1 ID=prot_H-elongata_contig94823.16893.1|Name=mRNA_H-elongata_contig94823.16893.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MVGRASYYDPWAFRHTDSVIFGSTDPGFTRREIMERCIDRFEDYTREWQR
ESPEHHKTRDHVLGTLVKPLGYISSGTRVRRKLPVCV*
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mRNA from alignment at H-elongata_contig94823:687..2513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94823.16893.1 ID=mRNA_H-elongata_contig94823.16893.1|Name=mRNA_H-elongata_contig94823.16893.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1827bp|location=Sequence derived from alignment at H-elongata_contig94823:687..2513+ (Himanthalia elongata Himel1 dioecious)
GTGTCGCTGGTGTCATGGTCGGACGCGCCAGTTACTATGATCCGTGGGCC
TTTCGACACACAGACAGCGTCATTTTTGGCTCGACAGATCCAGGTGTGGC
TTCGCGTTCCTACTGAACGTCGAGCGTGTTGCTCTCGGTGCGTCTTATCG
TTGACGCCTAGCACGGACATGGTACGCAATAGGGGCACCGTAATTCGTGA
TAGAGTGGCTGCAAACGTATGAATCGACACTTCCAACACTATACAACATG
TTGATCGCAGGCAAAGGATGCGGCGTCTGATGGCTCCGGGGGTCCCCTCT
CTCCCACCCCTAACCTATCGATCATTGAAAAACTTTTCCAAAAGCGCCGC
GACTGGGAAAAAAGCAAAACAAACTAAATTGATATCAAAAGCCATCTCTC
ACCAGTCGGCGCCCAGATACGATATTGCGCTTGTACACACCCTTTTAGTG
GACATTTGCCCCGTGGTACAAAATACACAACAGGTTTTACGCGGCGTGAG
ATAATGGAGCGCTGCATAGATAGGTTCGAGGATTACACTCGAGAGTGGCA
GAGGGAGAGCCCGGAGCACCACAAAACTCGGGATCACGTCTTGGGCACCT
TGGTGAAGCCTTTAGGATATATCTCATCCGGGACAAGGGTAAGAAGAAAG
CTTCCTGTGTGTGTTTAAGCCGAAGTTCAGGACCTGTTGATGCTTGGTTA
TACACAATATTCTAGTAACCCTCCCCTCCAAAGCTTTGCCCTGTTATACC
GCCTTTGCAAACCGTCATGTCCACTCTTCCCATAGCGGGTGTGGGAAAAT
AGAGGCGTACATTACTTGGTACATGGGGTTACCTCAATAAGGTGCACCTG
TTACTCAAGCTACCTTGAGGACAAATTGGCTCAGTGCCGGCGGACTCTCG
GCAGTAAACGCATTACGTGACCTGATAAAATCGGGATTGACCCGATGGCT
GTTGACGGTAGAGATGGACACCGTCGCGGAAAACGGGAGGATTGAGAGGA
TCCCGGGAGTAAGCACCATATTCAGCATGGGTTGGGAGAATGCACGGGCT
GACGCGGTACGGGACTGTTGAATTGGAAATTGATTTTGTGACTACATAGT
CACAATTTAGTTTGTGACAACCGGGACATATAAGGGGTCATTCCCGGGGT
TTCCACCATCAAATTAAGGTTCCCATAGGTCGGTAGGTGTGGGTTAAGAT
AGAGGGCGGGTTGGGTCAGCCAGTATACCGTAAACGACACAAGATAACAC
ACCCCGGTGATAACATTTTTGGGTTTGAAAATATTAACACCGGGTGTGGT
ATCCTGTGGGGGGTATGGTATCTTATGTAGCCCGGGTTATAAAGTGCAGC
TCGCAGGGGCCCCTAAGGGTGTGTGATAAATGGGGGGTGTGATAGCACGT
CCGGCGGCGGCTGTCATGTTGGCGCCTGTTGCTGCTGTTAGATCAACAGT
AGCAGGAGCCGCTTGCGTAGAAGACGTTTGCTCGGGTTGAAAGAACGAGG
TGATCTGTGGCGCCTGTGCTGCTGCGGTAGAAGTAGTTGTGGAAGAAGCG
GAGGTACTTGCGGTGGCATTCTGCTCTTCCTGCACGTTCATGTTGTTTGT
TGGAGGTCTCCATGCGAGGTGTTTCCCCGCACACAGAGGGTGTGTGTTGT
GTGTGATGCCCAGGGGCAGATGCTGTCACCCCGGTGGTAAAAAGGAAGGC
CCCCGTGAATATATGCGGCGTAACCTTAAATTATCACCGGGGTGTGTTAT
CTTGTGTAGCCCGGGTGATAAATCGATGGTTTGTCAGAAACGCCCAAAAT
TATCACCGGGGTGTCGTATTCTGTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig94823:687..2513+

>mRNA_H-elongata_contig94823.16893.1 ID=mRNA_H-elongata_contig94823.16893.1|Name=mRNA_H-elongata_contig94823.16893.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig94823:687..2513+ (Himanthalia elongata Himel1 dioecious)
ATGGTCGGACGCGCCAGTTACTATGATCCGTGGGCCTTTCGACACACAGA
CAGCGTCATTTTTGGCTCGACAGATCCAGATGGTCGGACGCGCCAGTTAC
TATGATCCGTGGGCCTTTCGACACACAGACAGCGTCATTTTTGGCTCGAC
AGATCCAGGTTTTACGCGGCGTGAGATAATGGAGCGCTGCATAGATAGGT
TCGAGGATTACACTCGAGAGTGGCAGAGGGAGAGCCCGGAGCACCACAAA
ACTCGGGATCACGTCTTGGGCACCTTGGTGAAGCCTTTAGGATATATCTC
ATCCGGGACAAGGGTAAGAAGAAAGCTTCCTGTGTGTGTTTAAGTTTTAC
GCGGCGTGAGATAATGGAGCGCTGCATAGATAGGTTCGAGGATTACACTC
GAGAGTGGCAGAGGGAGAGCCCGGAGCACCACAAAACTCGGGATCACGTC
TTGGGCACCTTGGTGAAGCCTTTAGGATATATCTCATCCGGGACAAGGGT
AAGAAGAAAGCTTCCTGTGTGTGTTTAA
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