mRNA_H-elongata_contig9479.16892.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9479.16892.1
Unique NamemRNA_H-elongata_contig9479.16892.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig9479.16892.1 vs. uniprot
Match: D8LEH1_ECTSI (SH3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEH1_ECTSI)

HSP 1 Score: 530 bits (1366), Expect = 7.560e-175
Identity = 321/582 (55.15%), Postives = 365/582 (62.71%), Query Frame = 2 
Query:  110 MATWKGAVAPKPASRVAPGNKLWHAFKHKNFDILKFDLDAEEDQSYVQASERFLEFQAQLGMVLHHAEAFRKSLEESLQQGVELADDFGRISSGHGGGRILEPWAQKAGGQAFFLKGMLEESVASLRQYLYTDLEERMVRPLREEFNNFSGVQARMVERSNMKMEMLHYSNKVHELKANQKATDEKKDRNKEKYAQASQALRDQTNQLMSIFAHAEQVRQRLLTQDLPTLVLTERNAFDAFAINLNKAAAEATDGEPRPPRMSDAARAPHRVMPPSDFPTTPRETSLAEVSLEDGSPKNTPPVYSSPFPVKVEPPPPAEDAKPTIVKKRSPLPVSPKESGAPWSSSNGGGEFGAELKRAQEHQNSKMAAESA------------------------AATTSSANTAETVVSVPPGAEENADESVAPAGVDAGATMTTNASAAENPDPVAAP---EDESLPTNANTAHSPPYEES------VDVDESTPTEQAAGIGMPE---------------------LASGKVRVRALYDYDATQDGDLSFRAGDMIITDGGSFSGDGWVSGECNGSTGIFPANYTEPW 1693
            MATWKG   PKP  RV   NKLWHAFKHKN D+ KFDLDA+EDQ+YV ASERFLEFQ QLGMVLHH + FRK+LEESLQ  VELADDFGR+++G+GGGR +EPWAQKAGGQAFFLKGMLEES  SLRQ+L  +LEE++VR LREE  NFS V  +M+ERSNMKMEMLHYSNKV ELK +QKATDEKKDRNKEKYAQASQALRDQTNQLMSIFAHAEQ+RQRLLTQD P+++  E+NAFDAFAINLNKAAAE +DGEPRPPRMSDAARAP R                                                             P+SPK+ GAPWS SN GGEFG ELKRA EHQNSKMAAESA                        A T +  N++ +       AE++     A     A A      +  E+P P AA    +DE+    +      P +E+      V    + P   A G    E                     L  GKVRVRALYDY+ATQ+GDLSF  GDMIITDGG+FSGDGWVSG C+G+TGIFPANYTEPW
Sbjct:    1 MATWKGG--PKPPPRVVAPNKLWHAFKHKNLDVFKFDLDADEDQNYVSASERFLEFQTQLGMVLHHTQLFRKTLEESLQHAVELADDFGRVAAGNGGGRTMEPWAQKAGGQAFFLKGMLEESAVSLRQHLCDELEEKVVRSLREEVANFSTVHTQMLERSNMKMEMLHYSNKVQELKGSQKATDEKKDRNKEKYAQASQALRDQTNQLMSIFAHAEQLRQRLLTQDFPSVITAEKNAFDAFAINLNKAAAETSDGEPRPPRMSDAARAPQRT------------------------------------------------------------PMSPKDGGAPWSGSNDGGEFGEELKRAHEHQNSKMAAESAXXXXXXXXXXXXXXXXXXXXXXXXADTPAMTNSSTSGADAADDAEKHDPSEAAALAAPAPAGEKDATAPTESPKPPAAAATVDDEAAVAGSGPKTDSPDDEAEALTAAVPAMATAPEASAPGEEQAEEVPGXXXXXXXXXXXXXXXXXLEPGKVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTEPW 520
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BLAST of mRNA_H-elongata_contig9479.16892.1 vs. uniprot
Match: A0A836CJ66_9STRA (SH3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ66_9STRA)

HSP 1 Score: 160 bits (405), Expect = 9.130e-37
Identity = 157/498 (31.53%), Postives = 238/498 (47.79%), Query Frame = 2 
Query:  221 LDAEEDQSYVQASERFLEFQAQLGMVLHHAEAFRKSLEESLQQGVELADDFGRISSGHGGGRILEPWAQKAGGQAFFLKGMLEESVASLRQYLYTDLEERMVRPLREEFNNFSGVQARMVERSNMKMEMLHYSNKVHELKANQKATDEKKDRNKEKYAQASQALRDQTNQLMSIFAHAEQVRQRLLTQDLPTLVLTERNAFDAFAINLNKAAAEATDGEPRPPRMSDAARAPHRVMPPSDFPTTPR---ETSLAEVSLEDGSPKNTPPVYSSPFPVKVEPPPPAEDAKPTIVKKRSPLPVSP-----KESGAPWSSSNGGGEFGAELKRAQEHQNSKMAAESAAATTSSANTAETVVSVPPGAEENADESVAPAGVDAGATMTTNASAAENPDPV-AAPEDESLPTNANTAHSPPYEESVDVDESTPTEQAAGIGMPELASGKVRVRALYDYDATQDGDLSFRAGDMIITDGGSFSGDGWVSGECNGSTGIFPANYTE 1687
            +D E D+ Y  A ERFL F+AQL  ++ + E FR  L+ES+    +L+ +F ++S G G                        +S  +L + L+ DL++ ++  L+ +  +++ +   + ER  +K+E+ HYS+KV EL  N K   E+K RN+EKYA A+  LR+QT+ L+  FA +E  R+R+L +DLP ++  +R A+ A A N  KAA     G    P M   +R         D P + R   + ++     E     + P   +S     V     A     T     + L  SP     K +     S   GG  G  + ++  H  S  AA S           E VVS     E+N   +  P   +    +   AS  +  +PV AA   E+   +AN + + P  E VD           G+G      G +RVRALYD++A ++GDL+F+A D+I+TD   +S DGWV+G CNG TG FP+NYTE
Sbjct:  333 VDTESDRDYKAAEERFLVFRAQLLEIIQNTEQFRSRLKESIAVASKLSQNFLKVSQGEG------------------------DSGVALDELLFVDLDKYVLSDLKIQHESYNDINKLVKERYELKVELQHYSDKVQELNDNPKVAAERKVRNEEKYATANTRLREQTDALLRRFAESEVRRRRVLEEDLPRIMDLKRLAYAALATNAEKAA----QGLVLAP-MRSGSRGSSSAFGSKDLPGSARGSYDNTVTGQGAESARMSDVPLGGTSSQRTSVNTDHGASSHALTAKPAAAALLDSPPSHLYKRASGSMESVQPGGNAGGVVGQSS-HSGSAAAAAS-----------EDVVSTRTALEQNMGATAVPVSQE----VFHEASYEQEQEPVTAAATPEANAADANASRTEP--EVVD----------GGLG-----PGYMRVRALYDFEAAEEGDLNFKANDIIVTDASRWSADGWVTGTCNGQTGQFPSNYTE 768
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BLAST of mRNA_H-elongata_contig9479.16892.1 vs. uniprot
Match: A0A835Z502_9STRA (SH3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z502_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.100e-16
Identity = 49/103 (47.57%), Postives = 64/103 (62.14%), Query Frame = 2 
Query: 1403 LPTNANTAHSPPYEESVDVDESTPTEQAAGIGMP--------ELASGKVRVRALYDYDATQDGDLSFRAGDMIITDGGSFSGDGWVSGECNGSTGIFPANYTE 1687
            +P N   A SP  E+  D  E+     +AG G P        EL  G +RVRAL+D++A Q GDL+F+AGD+IIT+   +  DGWV+G CNG TG FP+NYTE
Sbjct:   40 VPNNGTVATSP--EQDADGQENPADPGSAGGGPPMLAQSDSEELPPGFIRVRALFDFEAAQPGDLNFKAGDIIITESAQWGMDGWVNGICNGQTGQFPSNYTE 140
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BLAST of mRNA_H-elongata_contig9479.16892.1 vs. uniprot
Match: A0A7S3XPH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPH4_HETAK)

HSP 1 Score: 70.5 bits (171), Expect = 2.040e-10
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 2 
Query: 1475 TEQAAGIGMPELASGKVRVRALYDYDATQDGDLSFRAGDMIITDGGSFSGDGWVSG-ECNGSTGIFPANYTEPW 1693
            TEQ  G   P +  GK+R++A+++Y A QDGDLSF  GD I  +   +  + W+ G + +GS+G+FP NYTEPW
Sbjct:   78 TEQEDG---PVIPPGKIRLKAVFEYVAQQDGDLSFDVGDAIFVEDQVYEENAWIEGSKPDGSSGVFPTNYTEPW 148
[Close]
BLAST of mRNA_H-elongata_contig9479.16892.1 vs. uniprot
Match: A0A8B7ZHF0_ACAPL (src substrate cortactin-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZHF0_ACAPL)

HSP 1 Score: 64.7 bits (156), Expect = 6.390e-7
Identity = 44/107 (41.12%), Postives = 55/107 (51.40%), Query Frame = 2 
Query: 1370 PDPVAAPEDESLPTN-ANTAHSPPYEESVDVDESTPTEQAAGIGMPELASGKVRVRALYDYDATQDGDLSFRAGDMIITDGGSFSGDGWVSGECNGSTGIFPANYTE 1687
            P+PV A   E +P   A    SPP E++V        E   G G    + G +   A+YDY AT D ++SF  GD +ITD       GW  G CNGS G+FPANY E
Sbjct:  399 PEPVPADTYEEIPQKVAEPEQSPPVEDAV-------YEDMPGAGTENTSGGGMTAVAVYDYQATGDDEVSFDPGD-VITDIDQID-SGWWMGTCNGSRGLFPANYVE 496
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BLAST of mRNA_H-elongata_contig9479.16892.1 vs. uniprot
Match: A0A8H4VV55_9AGAR (SH3 domain-containing protein n=1 Tax=Agrocybe pediades TaxID=84607 RepID=A0A8H4VV55_9AGAR)

HSP 1 Score: 63.2 bits (152), Expect = 1.800e-6
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 2 
Query: 1424 AHSPPYEESVDVDESTPTEQAAGIGMPELASGKV-RVRALYDYDATQDGDLSFRAGDMIITDGGSFSGDGWVSGECNGSTGIFPANYTE 1687
            +++ P++ES   +  +           + +S KV R  ALYD++A QDGD+SFR GD+I     S S D W +G C G  GIFPAN+ E
Sbjct:  377 SYASPFQESTQANLFSSQTNTGQTWASQTSSLKVTRAIALYDFNAVQDGDISFRKGDVIEVTQKSDSTDDWWTGRCKGQQGIFPANFVE 465
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BLAST of mRNA_H-elongata_contig9479.16892.1 vs. uniprot
Match: A0A164UHM1_9AGAM (DUF500-domain-containing protein n=2 Tax=Sistotremastrum TaxID=139133 RepID=A0A164UHM1_9AGAM)

HSP 1 Score: 62.0 bits (149), Expect = 4.350e-6
Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 2 
Query: 1406 PTNANTAHSPPYEESVDVDESTPTEQAAGIGMPELASGKVRVRALYDYDATQDGDLSFRAGDMIITDGGSFSGDGWVSGECNGSTGIFPANYTE 1687
            PT+ N+  SPP         S    +A  I  P   +G  R  ALYDY+A Q GDLSF+ GD+II    + S   W +G  NG  GIFPAN+ E
Sbjct:  389 PTSINSMESPPNVARSLSKPSIAPVRAPSISEPPGKNG--RAIALYDYNAQQSGDLSFKKGDVIIIVEKTGSSHDWWTGRVNGKKGIFPANFVE 480
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BLAST of mRNA_H-elongata_contig9479.16892.1 vs. uniprot
Match: A0A067TSJ6_GALM3 (SH3 domain-containing protein n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067TSJ6_GALM3)

HSP 1 Score: 61.6 bits (148), Expect = 5.500e-6
Identity = 38/97 (39.18%), Postives = 52/97 (53.61%), Query Frame = 2 
Query: 1400 SLPTNANTAHSPPYEESVDVDESTPTEQAAGIGMPELA-SGKVRVRALYDYDATQDGDLSFRAGDMIITDGGSFSGDGWVSGECNGSTGIFPANYTE 1687
            S PT + T  +PP+            +    +  P L+  G  R  ALYD++A + GDLSFR GD+I+    S S D W +G+ NG  GIFPAN+ E
Sbjct:  382 SSPTPSQTISAPPF-----------IKPRIELSKPLLSHEGVARAIALYDFNAIERGDLSFRKGDVIVISKKSESVDDWWTGKLNGHEGIFPANFVE 467
[Close]
BLAST of mRNA_H-elongata_contig9479.16892.1 vs. uniprot
Match: I2G2R2_USTH4 (Related to RVS167-BAR adaptor protein n=3 Tax=Ustilago TaxID=5269 RepID=I2G2R2_USTH4)

HSP 1 Score: 61.2 bits (147), Expect = 6.350e-6
Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 2 
Query: 1502 PELASGKVRVRALYDYDATQDGDLSFRAGDMIITDGGSFSGDGWVSGECNGSTGIFPANY 1681
            P +A  +  V ALYDY AT DGDLSFRAGD I     + S + W +G  NG  G+FP NY
Sbjct:  358 PGMAPARTYVIALYDYTATADGDLSFRAGDRIEVTERTASTEDWWTGIVNGQKGVFPGNY 417
[Close]
BLAST of mRNA_H-elongata_contig9479.16892.1 vs. uniprot
Match: A0A4Z2G4P6_9TELE (Growth factor receptor-bound protein 2 n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2G4P6_9TELE)

HSP 1 Score: 58.9 bits (141), Expect = 7.300e-6
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 2 
Query: 1526 RVRALYDYDATQDGDLSFRAGDMI-ITDGGSFSGDGWVSGECNGSTGIFPANYTEP 1690
            +V+AL+D+ A +DG+LSF+ GD++ + D    SG GW  G CNG TG+FP NY  P
Sbjct:  158 QVKALFDFTAKEDGELSFKKGDIVQVLDR---SGAGWWKGTCNGKTGMFPNNYVTP 210
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9479.16892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEH1_ECTSI7.560e-17555.15SH3 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CJ66_9STRA9.130e-3731.53SH3 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835Z502_9STRA1.100e-1647.57SH3 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3XPH4_HETAK2.040e-1045.95Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8B7ZHF0_ACAPL6.390e-741.12src substrate cortactin-like n=1 Tax=Acanthaster p... [more]
A0A8H4VV55_9AGAR1.800e-640.45SH3 domain-containing protein n=1 Tax=Agrocybe ped... [more]
A0A164UHM1_9AGAM4.350e-642.55DUF500-domain-containing protein n=2 Tax=Sistotrem... [more]
A0A067TSJ6_GALM35.500e-639.18SH3 domain-containing protein n=1 Tax=Galerina mar... [more]
I2G2R2_USTH46.350e-651.67Related to RVS167-BAR adaptor protein n=3 Tax=Usti... [more]
A0A4Z2G4P6_9TELE7.300e-650.00Growth factor receptor-bound protein 2 n=1 Tax=Lip... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9479contigH-elongata_contig9479:1822..8760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score540.0
Seed ortholog evalue1.2e-150
Seed eggNOG ortholog2880.D8LEH1
KEGG koko:K11247,ko:K11650,ko:K20047
KEGG Pathwayko04144,ko04714,ko05225,map04144,map04714,map05225
EggNOG free text desc.intracellular protein transport
EggNOG OGsKOG2199@1,KOG2199@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSH3 domain
Ec32 orthologEc-21_004710.1
Exons7
Model size3176
Cds size1587
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931342.9623876-UTR-H-elongata_contig9479:1821..19301622931342.9623876-UTR-H-elongata_contig9479:1821..1930Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9479 1822..1930 +
1691679797.6500204-UTR-H-elongata_contig9479:1821..19301691679797.6500204-UTR-H-elongata_contig9479:1821..1930Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9479 1822..1930 +
1622931343.0976408-UTR-H-elongata_contig9479:7280..87601622931343.0976408-UTR-H-elongata_contig9479:7280..8760Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9479 7281..8760 +
1691679797.743435-UTR-H-elongata_contig9479:7280..87601691679797.743435-UTR-H-elongata_contig9479:7280..8760Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9479 7281..8760 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931342.9777327-CDS-H-elongata_contig9479:1930..20361622931342.9777327-CDS-H-elongata_contig9479:1930..2036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9479 1931..2036 +
1691679797.6622913-CDS-H-elongata_contig9479:1930..20361691679797.6622913-CDS-H-elongata_contig9479:1930..2036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9479 1931..2036 +
1622931342.994956-CDS-H-elongata_contig9479:2361..24321622931342.994956-CDS-H-elongata_contig9479:2361..2432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9479 2362..2432 +
1691679797.6718955-CDS-H-elongata_contig9479:2361..24321691679797.6718955-CDS-H-elongata_contig9479:2361..2432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9479 2362..2432 +
1622931343.0107894-CDS-H-elongata_contig9479:4788..49941622931343.0107894-CDS-H-elongata_contig9479:4788..4994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9479 4789..4994 +
1691679797.681212-CDS-H-elongata_contig9479:4788..49941691679797.681212-CDS-H-elongata_contig9479:4788..4994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9479 4789..4994 +
1622931343.028343-CDS-H-elongata_contig9479:5229..53351622931343.028343-CDS-H-elongata_contig9479:5229..5335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9479 5230..5335 +
1691679797.6907592-CDS-H-elongata_contig9479:5229..53351691679797.6907592-CDS-H-elongata_contig9479:5229..5335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9479 5230..5335 +
1622931343.0504692-CDS-H-elongata_contig9479:5636..59591622931343.0504692-CDS-H-elongata_contig9479:5636..5959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9479 5637..5959 +
1691679797.7018185-CDS-H-elongata_contig9479:5636..59591691679797.7018185-CDS-H-elongata_contig9479:5636..5959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9479 5637..5959 +
1622931343.0662348-CDS-H-elongata_contig9479:6264..64441622931343.0662348-CDS-H-elongata_contig9479:6264..6444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9479 6265..6444 +
1691679797.7186227-CDS-H-elongata_contig9479:6264..64441691679797.7186227-CDS-H-elongata_contig9479:6264..6444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9479 6265..6444 +
1622931343.080373-CDS-H-elongata_contig9479:6685..72801622931343.080373-CDS-H-elongata_contig9479:6685..7280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9479 6686..7280 +
1691679797.7298424-CDS-H-elongata_contig9479:6685..72801691679797.7298424-CDS-H-elongata_contig9479:6685..7280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9479 6686..7280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9479.16892.1prot_H-elongata_contig9479.16892.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9479 1931..7280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9479.16892.1

>prot_H-elongata_contig9479.16892.1 ID=prot_H-elongata_contig9479.16892.1|Name=mRNA_H-elongata_contig9479.16892.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=529bp
MATWKGAVAPKPASRVAPGNKLWHAFKHKNFDILKFDLDAEEDQSYVQAS
ERFLEFQAQLGMVLHHAEAFRKSLEESLQQGVELADDFGRISSGHGGGRI
LEPWAQKAGGQAFFLKGMLEESVASLRQYLYTDLEERMVRPLREEFNNFS
GVQARMVERSNMKMEMLHYSNKVHELKANQKATDEKKDRNKEKYAQASQA
LRDQTNQLMSIFAHAEQVRQRLLTQDLPTLVLTERNAFDAFAINLNKAAA
EATDGEPRPPRMSDAARAPHRVMPPSDFPTTPRETSLAEVSLEDGSPKNT
PPVYSSPFPVKVEPPPPAEDAKPTIVKKRSPLPVSPKESGAPWSSSNGGG
EFGAELKRAQEHQNSKMAAESAAATTSSANTAETVVSVPPGAEENADESV
APAGVDAGATMTTNASAAENPDPVAAPEDESLPTNANTAHSPPYEESVDV
DESTPTEQAAGIGMPELASGKVRVRALYDYDATQDGDLSFRAGDMIITDG
GSFSGDGWVSGECNGSTGIFPANYTEPW*
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mRNA from alignment at H-elongata_contig9479:1822..8760+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9479.16892.1 ID=mRNA_H-elongata_contig9479.16892.1|Name=mRNA_H-elongata_contig9479.16892.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6939bp|location=Sequence derived from alignment at H-elongata_contig9479:1822..8760+ (Himanthalia elongata Himel1 dioecious)
GGGGTAAGCCGGTCGTTCTGCAACTTTCTTTATGTAATAAATTGCTAACC
GCTTGGAGAAAGGGAGGGGAGTGCACGTAGGAAGCAAGAACTTTTGCCGC
CTTCACATCATGGCAACGTGGAAAGGAGCTGTTGCCCCGAAGCCTGCTTC
ACGAGTGGCACCTGGAAATAAGCTCTGGCATGCCTTCAAGCACAAGAACT
TCGACATTTTGAAGTGTGAGTTAATAGCCGCCATGAGACACTCGCCAAAT
TTTACGGTCCCCGCGAGGTCTTCCACGTTCGTTGGCGTGCTATGCGAAGC
TTCTTCGATGACCGGGCTTACTCTGATCACGATTGTACCCGTGCTGGAGG
AAACATTTTTGGTGGATTTCTTGTTGTTGAGAGGGCGGTAAAGGAATCGC
TGAAGACGTGATAAAGATCCCGTTGGGAGATATGTTTCCTTACGTCTGCT
GATAGCCTTATCTATTTCCTTGAAAAACATCCTAAACACCGACGTCGTTT
TCCTTTGTTACCCTTTTTACGTGCCGTTCACGTTATCCAGTCGACTTGGA
CGCTGAGGAAGATCAAAGCTACGTACAAGCGTCCGAGCGATTCCTGGAGT
TTCAGGCACAGGTATGGGCAAAATGCAGTAACCTAACTAATGGTCACGTG
TCCATAACGTAGAACTTAACCATGTTTCAGCCTTGATGGCTGAGCTCTGG
CGAAAAGAAAGAGGAATACTGATGCCGCTGTTGTTCGAGTACCAGGTCCA
TACCAGTAGCCTTCAGGTATACGTACCCTCTACGACCTCTTATAAGCTTG
TGAAAAATGCTGCTGTTGGACGATCAATAAACTTAAACTGTGCCAGTACT
GTAACAAGTATGCGTTTGCTTCTCTCCACTGGCAGAGCAGTTTTGACTAC
CTTAACACGCTGGGGGGGGCGAAGTATACATACAGTAAACGATTAAGCGA
GGGCTAAGGTATTGGATGAGTTTACGGGCTAGATGGCAGTATGTTTTTTT
TTCCGTCCTCGGCTCGTGAGTTTTTCCTGTTGGAGACATCGTCGTCCGAT
TAGTCGGAAAGTTTTTTACCTCTCGATACAGGAGTAGTCCTCAAGTTAGA
GCCCCGAGACGTCAAGCCTGAGTGTGGTCTAGACAAACCAACAAATTGAG
AAAAAATCCACCGAAGAATACTTGTGATTTGAAAATATTCCTAACTCCAA
GTGCGGACCTAAGCACGGAACCGAGAACTGTGACGACGTAGGTACGTGCC
CCTGCCCTCGTCCGCGCCGTCGGGGTGGATCATACAAGTACCCAACAAAG
AGGCCAGTACGCGTACTAAATAGGACGCTAGCTCTACTAGCGTAGCAAAT
ATCAGCACCTACATTTTTATTAGAAAAACCTTGAACTCATTCCAACCCTC
CGAACATCGACATGTGCTCACTAAATCCTTCCGCCACGATAATCCTCCTG
CTTGCAGCTCTAGAGTTGGCACAGAGAGAGCCAGCGTCAAAATGTCTGAT
TTATGATTTGCTGTTTACCCACTCTATACCGTGGGCAGCTACTAGGAGCT
ACCTCGAGTTCTCTCAGTTTGCCATTGGTGTATACTATTAAAAGCGGTCT
GTCAAAAACACCCAGGGAATGAGAAACACCCCTCTCGACAGTACACAGCA
CAGGCACAGGACCCACGTCATGAATTATGTGTACGGAAAATATTTTGCGA
TGTGTGTTCCCAAATCTGCACTTTTTTTTGCTCTCCTCGCTGTTGGCGTC
GTCTCCAAGGAATGAACCGGGGACACTTCGCTCTATCCCCGGGTGGGGGG
AAAAAACATCCAACTTTTCAATATTCTAAGTAACCATCGTTTAAAGTTTG
AAAACAGTATTACGGTATTTGAAAATAGAGCAGGGCTGAAGAGACCGAGG
CAAAGTTAAGAGCTTTCGGGCTTCCGTCGGACATATTCCATGACATCTCG
CTCTACATCTGGCAACATAATAAAATGCCATAGAAACTGACGAAGCGGAG
AATATGAAGTAACCTGGCCAAGCAGAGTTCAACCATAAGTTGACGGGGTG
CAGGAGTGCTGAACTTGCATCGCGATAAAAAAAAGATAAAATCAAAGGCA
TTAATGAACCGGGGAGAGATGGATAGATAGATATAGAGCTAGCTCTCCCT
TGGAACCACGGGCGGGATAAGCACAACGTTGCGGTAGATCGGATTAATCA
ATAGCCTAGCACATGAAATGCCCCCATCCGTAGAAAGTGACATTTTCTAA
AAACAAACTATTATTAACAATTCCAACGCGTTTTTTTAATGGAAAGCACC
AGAGCTGCCTGGTACCCAAACTCACCCGGCGTATTTATTTTGCGGTGAAG
TACGCGCGAGGGCACGGGAGGGGCGCGCGACGGCGGCGCGGGGCTCCATC
TAGAGCTTCAGACCTTACACGCCGAGAGTGAAATAGCGCGCTTGCATGTT
GCAGCTGGATCCAGCTTCGTGGTTGCACTGGTAGATTTCGAAGGAAATTT
GTCCGCCGGTTTTTCGACGTGCTTCGACAGGCGTTGTTACACCTGTAAGG
ACGGCCGCACGGCACATCATCCCAAATATAAGCGTGTGGTCACGGGCGCA
CATATAGCACCAGCTTGCTCTTCACGTCCACCTAAAACAACTCGCCTGGC
AGCTCTCTGGGTAGCCTTGACGCTCCAAGGGTCTATGAGTACTGTATGTG
CGTTAATCCAACATTGCCCACTGACAGCAGTAGCGTTACGAGAGACCTCC
GCGTAAGTCTCACCGCGAATGCGCACGGAAGGACTCGTATACTCAAGCCA
TGCGTAGCTGTGTGCTGCCAAGTTATCCCGCGGCTAGTGACCGCCGACGA
GGACGTGCAAGTGCTATCCTCAAGTTCCTTGGTCGCAAAGAATAAAGGTA
ATTCAGCCCGCGACTTACTGGTAACCTTGGGTATTTTGCTCGCCCCGCTG
GTCGCTCTCCACGGCAGCTGGGTATGGTCCTGCATCACGCAGAGGCGTTC
CGGAAATCTCTCGAGGAGTCGTTACAGCAGGGGGTGGAGCTGGCGGATGA
CTTCGGGAGGATCTCCTCCGGGCACGGGGGAGGGCGGATCCTGGAGCCAT
GGGCGCAAAAGGCTGGGGGGCAGGCGTTCTTTCTGAAGGGGATGCTGGAG
GAAAGCGTAGCGTCCCTTCGACAGTGAGTGACAATTTAACGCCGGGTTTG
GCGGATGGAGCTGGGTTTGCATGTAATGGGCAAGCGCGAAGTGGGGGTCG
ACGCTTGAAGCGCCCCGAACAGAAGTAGTAAGAGGATCAAATTGGTACTT
GTTCGCTTCTCGAAGGCGACAACGATCTAATCCTGACCAGGTTGGAAGTG
CGCACCGGTGCGACATTGTGCGTTTACCATCGCTTCGACCTGATACATCG
TTCTCTAGGTACTTATATACCGACTTGGAGGAGAGGATGGTTCGCCCTCT
ACGGGAAGAGTTCAACAACTTTAGCGGGGTGCAAGCGCGAATGGTCGAGC
GCTCCAATATGAAGGTGTGAGCGCATGAGCATGCGGGCAGGAGGCCGTGG
CAAATATGTGCGTCTCGAGAAAGGCTGAGAAATCGTGACACTTCACGCTT
CCGTGAAGGCGTTTAGCGCCGTTCCACTCGCCCCTCTTAGAAACACGTAG
TGTGTTCTCACGCCCCAAGGATTCTCTGGGGTTCTTTTTTACCCTGATCG
CTAGACATTCTCACTTCAGCATCGACCCTCTTGTTTAGAATGTGTGGCGC
GTATTTCGGCCACCTCATGACGCTCAAGTATCGCCCGTCAAACTAATATT
GTGGTCATATTGCAGATGGAGATGCTTCACTACTCGAACAAGGTGCACGA
ACTGAAGGCTAACCAGAAGGCGACGGACGAGAAGAAGGACCGCAACAAGG
AAAAGTATGCCCAGGCTTCGCAGGCGCTGAGGGACCAGACCAATCAGCTG
ATGTCAATATTCGCACACGCGGAGCAGGTCCGACAGAGATTATTGACCCA
GGATTTGCCAACTCTCGTCCTCACGGAGAGAAACGCCTTCGATGCTTTCG
CGATCAACCTCAACAAAGCCGCTGCCGAGGCCACCGATGGAGAGCCTCGT
CCACCTAGAATGTCAGATGCCGCGCGAGCTCCCCACAGGTGCGTCGAGTG
ATCGATGCCTGGGGTCCAACCTCAGCAATAAATTGTCTTCGGTTTTTGTT
TGTCTCTCTGCACCCTGCATTTCGCTTCTGTCGGGGAGGTGACGCATTTG
GGCTGACTGTATTTCCCCTGTCTGGTGGGGTTTTTGGCCATATTTGTGGC
GCGCAACTTTGACCTCCCTTTCGCACTGTAGCACTCTCTGTCTAATCTTG
GCCTGCGCGCGTCTCGCCACGAACGGCTCCTGTCTGCCCAATACCCAACA
CGACTCGCCCGGGGTTTCGACGTATGAACGGCGTGCGAGTTAGGGTGATG
CCTCCGAGCGACTTTCCGACGACCCCGAGAGAAACTTCTCTGGCGGAGGT
TTCGCTGGAAGATGGATCGCCGAAAAACACCCCCCCCGTCTACTCGTCGC
CCTTTCCGGTCAAAGTCGAACCGCCGCCGCCGGCGGAGGACGCGAAGCCG
ACCATCGTCAAGAAGCGGAGTCCGTGAGTGCAATTCAGAGTTCACGACCA
CATCGTCTTCGCTTCCTCCGAGCTTCCGAGATGACAGTTTTGGAAGTATT
TTTACACGCTTCTCTTGTTGATCAAAATGGCCAGGGCCTACTAAACAGTC
GCTTTCGCTAGGAATTACATGGACATCACTCGCCGTAAAACTCGTGAAGC
ACGTGTAGACGCAGCCAGCGACCACCTTACGATTTGCATGATGATACCGC
AACGAAAATCGCAGACTGCCTGTGAGCCCGAAGGAAAGCGGGGCGCCCTG
GTCGAGCAGTAACGGGGGAGGCGAATTCGGTGCAGAGCTTAAGCGTGCCC
AGGAGCACCAAAACAGCAAGATGGCCGCCGAGTCTGCCGCGGCGACGACT
TCATCTGCGAATACGGCCGAAACCGTCGTGTCTGTGCCACCAGGAGCCGA
GGAAAACGCGGACGAAAGCGTGGCACCCGCGGGAGTGGATGCAGGGGCGA
CAATGACGACAAACGCATCAGCTGCAGAGAACCCGGATCCTGTGGCGGCT
CCAGAAGACGAGTCGTTGCCTACAAACGCCAACACCGCGCATTCCCCTCC
GTACGAAGAGTCCGTCGACGTTGACGAAAGTACGCCGACCGAACAGGCTG
CGGGGATAGGAATGCCGGAACTGGCATCGGGAAAAGTGCGCGTGCGCGCG
CTGTATGACTACGATGCTACCCAAGATGGTGACCTCAGTTTCCGTGCCGG
AGACATGATCATTACCGACGGTGGATCATTCTCTGGGGACGGGTGGGTTT
CGGGGGAGTGCAACGGGAGCACGGGGATTTTCCCTGCAAACTACACGGAA
CCGTGGTGATGTAGCCCGCACCCCCGAGTCGTGGGTCGTTTCCAATCTAA
TATATCGTAAGCTTTCCCGTTCCCCGTGTTACCGTTAGCGGACAGGCTTT
TGCCATCGTTCGTTCCGGTTTTCTCGAACCTCTTCAAAAGGGTAGAGTTA
TTTGTTTTGCATTCCTTTTAAGGGTGTATTCCTGTACGCGTTCTGAGCTT
ATTACCTGGGATGATGGGTTAGGAATCTCAACTTCATCTGTCAGCATAAT
GTGCTAAGCGCATCGATCGGGACGTGTTGTGAATAAAACACTACGGGGAC
TCTATATCCGAGGCGCGCGTGCGCGTTCTTCCACATTTTGAATACGAAGC
CACTGTTTGTCTGCTCCCAAGTACAAAGTATGGACGCAAAGGTACGAACC
GTGCGCGATGGGTTGCGATTTCGCTCGTTGCGGGATAGACGGCGCGTGTA
GTGAGTGTGACCCACACTGGGGCGTAGGTCGTCGATGAGGCCCAGCAAGA
GCGACGTGATCGCGCCGTGCTTGCCGAATCTTGGCGGCAAGATTTCCCGT
GGGGGGGGGGAAATCAAACCAAAACAAGTACCTTTTTCCAAGAGGGCTTG
TGTACGTATGTTTACGTGATGCCGAAGAAAGACTTATCGTTTTTCTATTT
CCCCGCGCATCGTCGCGAAAAGCTGTGAGGTAGGTGAAGGAAGGCTTTCG
ATACGGCGAGGTTTTGTCGGTCGACTTAGTGTCTTGGTTTCACGCCGATG
TCTAGCGTCACCTCCGGCTCTGTCTCTTTGGTGGAGATCTGCGGTATCTG
ATTCTCGCTGCAAAGAGAGGTAACCAGGCCCTTACCTGGTCGGGTGTATA
TGTATGTTTGCTTTTGTGAAATTTTGCGCGTTAATGGGTCAACTCAGACA
AATTATTTCTTCTTTTCATCGACTTCGGTCTCAAACAAACGCGAGGGCTT
GTGTCTCGGGTGGATGTGTATCGTAACTACTGAGACGAGGCATTATCATT
AAGTTGAATTCCTTGTGGTGTGTCAGTGTAACTGCGCGGGCGGGTGAATC
GACTTTGGGCACTGATGCACGCGGCACTCGGCTGCAGTCGACGACCAAGC
ACGAAAGCCTCAACCTTACGAGAGTTTGCACATATCCAAATATATATATA
TATATATATACACACATCTGTATGGCACGGTTTTCAGCGAGGCGTGCTTT
TAAAAGTTGAAGTTGACCACCGGCACACTTTAGGAGGAAAATATTCGTTT
GAGTGGAGCACTGGCGGCGCGGTACGCTCAACAAACCGCCACCTCTCTGA
AAAAGTATGCAATACTTGACCATTGGATTAAAGGGAGACGGATTAAATTA
GAGGTTGAATGAAAAAAACTGCGCTGATGGCTGTGACAAAATTGAAAATA
AGCTCCAAACGGTATTAATACACTTTTGCACACCATCCTGATCTATTAGT
AATAGTTCGACCTTTTACGAATAAAAAAGCGTTTAAACG
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Coding sequence (CDS) from alignment at H-elongata_contig9479:1822..8760+

>mRNA_H-elongata_contig9479.16892.1 ID=mRNA_H-elongata_contig9479.16892.1|Name=mRNA_H-elongata_contig9479.16892.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3174bp|location=Sequence derived from alignment at H-elongata_contig9479:1822..8760+ (Himanthalia elongata Himel1 dioecious)
ATGGCAACGTGGAAAGGAGCTGTTGCCCCGAAGCCTGCTTCACGAGTGGC
ACCTGGAAATAAGCTCTGGCATGCCTTCAAGCACAAGAACTTCGACATTT
TGAAGTATGGCAACGTGGAAAGGAGCTGTTGCCCCGAAGCCTGCTTCACG
AGTGGCACCTGGAAATAAGCTCTGGCATGCCTTCAAGCACAAGAACTTCG
ACATTTTGAAGTTCGACTTGGACGCTGAGGAAGATCAAAGCTACGTACAA
GCGTCCGAGCGATTCCTGGAGTTTCAGGCACAGTCGACTTGGACGCTGAG
GAAGATCAAAGCTACGTACAAGCGTCCGAGCGATTCCTGGAGTTTCAGGC
ACAGCTGGGTATGGTCCTGCATCACGCAGAGGCGTTCCGGAAATCTCTCG
AGGAGTCGTTACAGCAGGGGGTGGAGCTGGCGGATGACTTCGGGAGGATC
TCCTCCGGGCACGGGGGAGGGCGGATCCTGGAGCCATGGGCGCAAAAGGC
TGGGGGGCAGGCGTTCTTTCTGAAGGGGATGCTGGAGGAAAGCGTAGCGT
CCCTTCGACACTGGGTATGGTCCTGCATCACGCAGAGGCGTTCCGGAAAT
CTCTCGAGGAGTCGTTACAGCAGGGGGTGGAGCTGGCGGATGACTTCGGG
AGGATCTCCTCCGGGCACGGGGGAGGGCGGATCCTGGAGCCATGGGCGCA
AAAGGCTGGGGGGCAGGCGTTCTTTCTGAAGGGGATGCTGGAGGAAAGCG
TAGCGTCCCTTCGACAGTACTTATATACCGACTTGGAGGAGAGGATGGTT
CGCCCTCTACGGGAAGAGTTCAACAACTTTAGCGGGGTGCAAGCGCGAAT
GGTCGAGCGCTCCAATATGAAGGTACTTATATACCGACTTGGAGGAGAGG
ATGGTTCGCCCTCTACGGGAAGAGTTCAACAACTTTAGCGGGGTGCAAGC
GCGAATGGTCGAGCGCTCCAATATGAAGATGGAGATGCTTCACTACTCGA
ACAAGGTGCACGAACTGAAGGCTAACCAGAAGGCGACGGACGAGAAGAAG
GACCGCAACAAGGAAAAGTATGCCCAGGCTTCGCAGGCGCTGAGGGACCA
GACCAATCAGCTGATGTCAATATTCGCACACGCGGAGCAGGTCCGACAGA
GATTATTGACCCAGGATTTGCCAACTCTCGTCCTCACGGAGAGAAACGCC
TTCGATGCTTTCGCGATCAACCTCAACAAAGCCGCTGCCGAGGCCACCGA
TGGAGAGCCTCGTCCACCTAGAATGTCAGATGCCGCGCGAGCTCCCCACA
GATGGAGATGCTTCACTACTCGAACAAGGTGCACGAACTGAAGGCTAACC
AGAAGGCGACGGACGAGAAGAAGGACCGCAACAAGGAAAAGTATGCCCAG
GCTTCGCAGGCGCTGAGGGACCAGACCAATCAGCTGATGTCAATATTCGC
ACACGCGGAGCAGGTCCGACAGAGATTATTGACCCAGGATTTGCCAACTC
TCGTCCTCACGGAGAGAAACGCCTTCGATGCTTTCGCGATCAACCTCAAC
AAAGCCGCTGCCGAGGCCACCGATGGAGAGCCTCGTCCACCTAGAATGTC
AGATGCCGCGCGAGCTCCCCACAGGGTGATGCCTCCGAGCGACTTTCCGA
CGACCCCGAGAGAAACTTCTCTGGCGGAGGTTTCGCTGGAAGATGGATCG
CCGAAAAACACCCCCCCCGTCTACTCGTCGCCCTTTCCGGTCAAAGTCGA
ACCGCCGCCGCCGGCGGAGGACGCGAAGCCGACCATCGTCAAGAAGCGGA
GTCCGGTGATGCCTCCGAGCGACTTTCCGACGACCCCGAGAGAAACTTCT
CTGGCGGAGGTTTCGCTGGAAGATGGATCGCCGAAAAACACCCCCCCCGT
CTACTCGTCGCCCTTTCCGGTCAAAGTCGAACCGCCGCCGCCGGCGGAGG
ACGCGAAGCCGACCATCGTCAAGAAGCGGAGTCCACTGCCTGTGAGCCCG
AAGGAAAGCGGGGCGCCCTGGTCGAGCAGTAACGGGGGAGGCGAATTCGG
TGCAGAGCTTAAGCGTGCCCAGGAGCACCAAAACAGCAAGATGGCCGCCG
AGTCTGCCGCGGCGACGACTTCATCTGCGAATACGGCCGAAACCGTCGTG
TCTGTGCCACCAGGAGCCGAGGAAAACGCGGACGAAAGCGTGGCACCCGC
GGGAGTGGATGCAGGGGCGACAATGACGACAAACGCATCAGCTGCAGAGA
ACCCGGATCCTGTGGCGGCTCCAGAAGACGAGTCGTTGCCTACAAACGCC
AACACCGCGCATTCCCCTCCGTACGAAGAGTCCGTCGACGTTGACGAAAG
TACGCCGACCGAACAGGCTGCGGGGATAGGAATGCCGGAACTGGCATCGG
GAAAAGTGCGCGTGCGCGCGCTGTATGACTACGATGCTACCCAAGATGGT
GACCTCAGTTTCCGTGCCGGAGACATGATCATTACCGACGGTGGATCATT
CTCTGGGGACGGGTGGGTTTCGGGGGAGTGCAACGGGAGCACGGGGATTT
TCCCTGCAAACTACACGGAACCGTGGTGAACTGCCTGTGAGCCCGAAGGA
AAGCGGGGCGCCCTGGTCGAGCAGTAACGGGGGAGGCGAATTCGGTGCAG
AGCTTAAGCGTGCCCAGGAGCACCAAAACAGCAAGATGGCCGCCGAGTCT
GCCGCGGCGACGACTTCATCTGCGAATACGGCCGAAACCGTCGTGTCTGT
GCCACCAGGAGCCGAGGAAAACGCGGACGAAAGCGTGGCACCCGCGGGAG
TGGATGCAGGGGCGACAATGACGACAAACGCATCAGCTGCAGAGAACCCG
GATCCTGTGGCGGCTCCAGAAGACGAGTCGTTGCCTACAAACGCCAACAC
CGCGCATTCCCCTCCGTACGAAGAGTCCGTCGACGTTGACGAAAGTACGC
CGACCGAACAGGCTGCGGGGATAGGAATGCCGGAACTGGCATCGGGAAAA
GTGCGCGTGCGCGCGCTGTATGACTACGATGCTACCCAAGATGGTGACCT
CAGTTTCCGTGCCGGAGACATGATCATTACCGACGGTGGATCATTCTCTG
GGGACGGGTGGGTTTCGGGGGAGTGCAACGGGAGCACGGGGATTTTCCCT
GCAAACTACACGGAACCGTGGTGA
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