mRNA_H-elongata_contig94788.16891.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94788.16891.1
Unique NamemRNA_H-elongata_contig94788.16891.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig94788.16891.1 vs. uniprot
Match: D7FSH8_ECTSI (RHD3b, RHD3/Sey1 family GTPase involved in the ER-to-Golgi traffic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH8_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 1.960e-57
Identity = 108/160 (67.50%), Postives = 134/160 (83.75%), Query Frame = 1 
Query:    1 KGFAGASLEDVLDVKVSCLAHHSFASDQFLLEVERLKSSVVEGEAETPAAEVARLLQQISAYAGPATESFSIKALAASFVANAAAVKCMASFRSLVGRMGSAFAELNTDFGELCDGLMDTVLEEFEKEVEG-SGHQVVSGVVSRKQAELKRNMLRELGER 477
            +GFAG++L DVLDVKV  L HHSFASD++LL    LK+SV++G A TPA EVARLLQQ+S+YAGPATES    AL ASF++++AAVKCMASF+SLVGRMG+ F ELNTDFGELCDG++DTVL+E+++ V+G SG    SGV+SRK+AELKR+ LRELG R
Sbjct:  199 EGFAGSALSDVLDVKVFTLPHHSFASDEYLLGAGLLKNSVMDGAAGTPAVEVARLLQQVSSYAGPATESVGSNALTASFISSSAAVKCMASFKSLVGRMGAGFEELNTDFGELCDGVIDTVLQEYDEAVDGVSG---ASGVLSRKKAELKRHCLRELGLR 355
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BLAST of mRNA_H-elongata_contig94788.16891.1 vs. uniprot
Match: A0A6H5JWB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB1_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.600e-26
Identity = 62/93 (66.67%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:    1 KGFAGASLEDVLDVKVSCLAHHSFASDQFLLEVERLKSSVVEGEAETPAAEVARLLQQISAYAGPATESFSIKALAASFVANAAAVKCMASFR 279
            +GFAG++L DVLDVKV  L HHSFASD++LL    LK+SV+ G A TPA EVARLLQQ+S+YAGPATES    AL ASF++++AAVKCMASF+
Sbjct:  199 EGFAGSALSDVLDVKVFTLPHHSFASDEYLLGAGLLKNSVMNGAAGTPAVEVARLLQQVSSYAGPATESVGSNALTASFISSSAAVKCMASFK 291
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94788.16891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSH8_ECTSI1.960e-5767.50RHD3b, RHD3/Sey1 family GTPase involved in the ER-... [more]
A0A6H5JWB1_9PHAE1.600e-2666.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94788contigH-elongata_contig94788:407..2077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.6
Seed ortholog evalue1.4e-49
Seed eggNOG ortholog2880.D7FSH8
EggNOG OGs2E20I@1,2S99P@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size492
Cds size492
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94788.16891.1prot_H-elongata_contig94788.16891.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94788 407..2077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931342.8751864-CDS-H-elongata_contig94788:406..5801622931342.8751864-CDS-H-elongata_contig94788:406..580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94788 407..580 +
1691679797.6207354-CDS-H-elongata_contig94788:406..5801691679797.6207354-CDS-H-elongata_contig94788:406..580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94788 407..580 +
1622931342.8922966-CDS-H-elongata_contig94788:1097..12021622931342.8922966-CDS-H-elongata_contig94788:1097..1202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94788 1098..1202 +
1691679797.6310034-CDS-H-elongata_contig94788:1097..12021691679797.6310034-CDS-H-elongata_contig94788:1097..1202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94788 1098..1202 +
1622931342.9112182-CDS-H-elongata_contig94788:1864..20771622931342.9112182-CDS-H-elongata_contig94788:1864..2077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94788 1865..2077 +
1691679797.6396973-CDS-H-elongata_contig94788:1864..20771691679797.6396973-CDS-H-elongata_contig94788:1864..2077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94788 1865..2077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94788.16891.1

>prot_H-elongata_contig94788.16891.1 ID=prot_H-elongata_contig94788.16891.1|Name=mRNA_H-elongata_contig94788.16891.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
KGFAGASLEDVLDVKVSCLAHHSFASDQFLLEVERLKSSVVEGEAETPAA
EVARLLQQISAYAGPATESFSIKALAASFVANAAAVKCMASFRSLVGRMG
SAFAELNTDFGELCDGLMDTVLEEFEKEVEGSGHQVVSGVVSRKQAELKR
NMLRELGERWWPV*
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mRNA from alignment at H-elongata_contig94788:407..2077+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94788.16891.1 ID=mRNA_H-elongata_contig94788.16891.1|Name=mRNA_H-elongata_contig94788.16891.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1671bp|location=Sequence derived from alignment at H-elongata_contig94788:407..2077+ (Himanthalia elongata Himel1 dioecious)
AAGGGGTTCGCAGGCGCCTCTCTAGAGGACGTGTTGGATGTGAAGGTCTC
GTGTCTGGCTCACCACAGCTTCGCCAGCGATCAGTTCTTGCTGGAGGTCG
AACGGCTCAAGTCGAGCGTCGTGGAGGGGGAGGCCGAGACGCCGGCGGCG
GAAGTCGCGCGCTTGCTCCAGCAGGTGCAGCACGAACGCCTCTCTCATTT
TTTCTCTCTAGATATTATGACATTGATGCATTGATGCATTGATCTACAGT
GTCCGCAAAAAGACAGACCGGTTTATTTACGCGGGCTTCGTTTTTACACA
CCCTAGTATCAGAGTTTTATCAAGCACGTATGCGTGTTGGGTCTAGCCAG
TTTAATCTGTCCTCCCGTGTTCGTTTTAATCTTGTTCTAACTATAAGGAT
GCAACACTTCTCTCGGGACTTCTAGCTCTAACCATCGAGCCCCCCCCCCC
CCCCCCCCCCCCCCCAAAAAACAAAAACCCGCCAACAAAAAATAATTTGT
ATTTTTGTTTTTCGGGAGCCGCCCCCGGGTCCCTCACAAACANNNNNNNN
NNCCCCCGTTTTTTTTTTATTTTTTTTTAACTATAAAGGATCAACCCCTT
CCTCGGGGCTTCTTGCCTCAACCCCCCGGCCCCCCCCCCCCCCCCATCTC
CCATCACAAATGATGATCACCGGCAATCAATATATGATTAGATTTCTGCG
TACGCGGGACCTGCCACGGAGTCCTTCAGCATCAAGGCCCTGGCCGCGTC
ATTCGTCGCCAACGCTGCCGCTGTCAAGTGCATGGCGAGCTTCAGGGTGT
GTATAAGAAACCCCCCCACACACACGAGTATGTAGCACAAAGCTGTTCCA
TGAAACAGGTTTTGATGTCTCGAGATGAGGTCAGGCATTCCTTTCGTGCA
GAGAAGGAAAGGGACATACTTCCACTGGTCAGTAGTGGGGCTGACTTCAT
TGGGGCTGTGCTGTGCTGTGCTGTTTGCTTCGTTCGGGGAGGGAGATACG
AAGACTCCCGGGGTGAAACGAAGACAAGTTACCTGCTCCAGCACGATGGT
CCTGGTGTGGCTGGACTGGGCTGGGCGCCTGCCGCTGCCGCTGCCGCTGA
TCTCACATTGCAGGACAAGGAGTTTTTCCTTTTTCCTCCCTCCGTGCCTC
CCTCCCTCCGACACCGAGAGAAGTGTTTTTCTTGCCCATGAGCGCTCTTA
TTAATATTAATAGTAATAGTAGCATTACAGTATTACATGTTACCAGGTAG
TAGTTAATAGTAATATTAATAGTAGCATTACAGTATTGCATTTGCAGCAG
CTAGTGTTAATACTAGCAGCAGGATATCTTGATGGAAGAGGAAGAGATAG
ATGGCTGGCCGCAAGCATCCGTTGCTTGACTCCTTGCGAATCCTTAAACA
ACGAAACAACCCCCCCCCCTCCCCCCAATAACCGCAAACCGTCTTCTTGC
GTGCCAAGTCGCTCGTGGGGCGCATGGGATCCGCGTTCGCGGAGCTCAAC
ACCGACTTCGGCGAGCTCTGCGACGGCCTCATGGATACAGTGCTGGAGGA
ATTTGAAAAGGAGGTGGAAGGGTCTGGCCATCAGGTGGTGTCGGGGGTCG
TGTCTCGCAAGCAGGCGGAGCTGAAGAGGAACATGTTGCGAGAGCTGGGC
GAAAGGTGGTGGCCTGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig94788:407..2077+

>mRNA_H-elongata_contig94788.16891.1 ID=mRNA_H-elongata_contig94788.16891.1|Name=mRNA_H-elongata_contig94788.16891.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig94788:407..2077+ (Himanthalia elongata Himel1 dioecious)
AAGGGGTTCGCAGGCGCCTCTCTAGAGGACGTGTTGGATGTGAAGGTCTC
GTGTCTGGCTCACCACAGCTTCGCCAGCGATCAGTTCTTGCTGGAGGTCG
AACGGCTCAAGTCGAGCGTCGTGGAGGGGGAGGCCGAGACGCCGGCGGCG
GAAGTCGCGCGCTTGCTCCAGCAGAAGGGGTTCGCAGGCGCCTCTCTAGA
GGACGTGTTGGATGTGAAGGTCTCGTGTCTGGCTCACCACAGCTTCGCCA
GCGATCAGTTCTTGCTGGAGGTCGAACGGCTCAAGTCGAGCGTCGTGGAG
GGGGAGGCCGAGACGCCGGCGGCGGAAGTCGCGCGCTTGCTCCAGCAGAT
TTCTGCGTACGCGGGACCTGCCACGGAGTCCTTCAGCATCAAGGCCCTGG
CCGCGTCATTCGTCGCCAACGCTGCCGCTGTCAAGTGCATGGCGAGCTTC
AGGATTTCTGCGTACGCGGGACCTGCCACGGAGTCCTTCAGCATCAAGGC
CCTGGCCGCGTCATTCGTCGCCAACGCTGCCGCTGTCAAGTGCATGGCGA
GCTTCAGGTCGCTCGTGGGGCGCATGGGATCCGCGTTCGCGGAGCTCAAC
ACCGACTTCGGCGAGCTCTGCGACGGCCTCATGGATACAGTGCTGGAGGA
ATTTGAAAAGGAGGTGGAAGGGTCTGGCCATCAGGTGGTGTCGGGGGTCG
TGTCTCGCAAGCAGGCGGAGCTGAAGAGGAACATGTTGCGAGAGCTGGGC
GAAAGGTGGTGGCCTGTGTGATCGCTCGTGGGGCGCATGGGATCCGCGTT
CGCGGAGCTCAACACCGACTTCGGCGAGCTCTGCGACGGCCTCATGGATA
CAGTGCTGGAGGAATTTGAAAAGGAGGTGGAAGGGTCTGGCCATCAGGTG
GTGTCGGGGGTCGTGTCTCGCAAGCAGGCGGAGCTGAAGAGGAACATGTT
GCGAGAGCTGGGCGAAAGGTGGTGGCCTGTGTGA
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