mRNA_H-elongata_contig94751.16889.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94751.16889.1
Unique NamemRNA_H-elongata_contig94751.16889.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig94751.16889.1 vs. uniprot
Match: D7FVU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU9_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 6.410e-29
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    1 RTKPVMSASTPSSDWPRNGTLLKGWYVHEHPGWVKIHHPKSYWLPIMQHGKAVLHEI 171
            RTKP M ++T SSDWPRNGT+LKGWYV EHPGWVKI HP+ YW+P+ QHGKAV+HE+
Sbjct:   24 RTKPEMGSTTSSSDWPRNGTMLKGWYVTEHPGWVKIDHPEGYWMPVEQHGKAVMHEV 80
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BLAST of mRNA_H-elongata_contig94751.16889.1 vs. uniprot
Match: A0A835ZIY5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIY5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.300e-21
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 RTKPVMSASTPSSDWPRNGTLLKGWYVHEHPGWVKIHHPKSYWLPIMQHGKAVLHE 168
            R++P M A+  +SDWPRNG++L GWYV EHPGWV+I HP  YW+P+ Q G  VLHE
Sbjct:   24 RSEPRMGATASASDWPRNGSVLHGWYVQEHPGWVRIDHPNGYWMPVEQDGHTVLHE 79
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BLAST of mRNA_H-elongata_contig94751.16889.1 vs. uniprot
Match: A0A835XUH0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XUH0_9CHLO)

HSP 1 Score: 87.8 bits (216), Expect = 2.120e-21
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 RTKPVMSASTPSSDWPRNGTLLKGWYVHEHPGWVKIHHPKSYWLPIMQHGKAVLH 165
            R+KP M+AS  + DWPRNG   KGW   EHPGWVK+ HPK YWLPI QHGK V H
Sbjct:   30 RSKPEMNASVQAPDWPRNGATFKGWKSVEHPGWVKVDHPKDYWLPIEQHGKPVCH 84
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BLAST of mRNA_H-elongata_contig94751.16889.1 vs. uniprot
Match: A0A8J4FZJ0_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FZJ0_9CHLO)

HSP 1 Score: 86.7 bits (213), Expect = 1.340e-20
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 RTKPVMSASTPSSDWPRNGTLLKGWYVHEHPGWVKIHHPKSYWLPIMQHGKAVLH 165
            R+KP M+AS  + DWPRNGT+ KGW   EHPGWVK+ HPK YWLPI Q+G  V H
Sbjct:   59 RSKPEMNASVSAPDWPRNGTVFKGWKSLEHPGWVKVDHPKGYWLPIQQYGNDVCH 113
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BLAST of mRNA_H-elongata_contig94751.16889.1 vs. uniprot
Match: A0A8J4G156_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4G156_9CHLO)

HSP 1 Score: 86.7 bits (213), Expect = 1.530e-20
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 RTKPVMSASTPSSDWPRNGTLLKGWYVHEHPGWVKIHHPKSYWLPIMQHGKAVLH 165
            R+KP M+AS  + DWPRNGT+ KGW   EHPGWVK+ HPK YWLPI Q+G  V H
Sbjct:   64 RSKPEMNASVSAPDWPRNGTVFKGWKSLEHPGWVKVDHPKGYWLPIQQYGNDVCH 118
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BLAST of mRNA_H-elongata_contig94751.16889.1 vs. uniprot
Match: A0A150GII6_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GII6_GONPE)

HSP 1 Score: 84.7 bits (208), Expect = 7.090e-20
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 RTKPVMSASTPSSDWPRNGTLLKGWYVHEHPGWVKIHHPKSYWLPIMQHGKAVLH 165
            R+KP M+AS  + DWPRNGT+ KGW   EHPGWVK+ HP++YWLPI Q+G  V H
Sbjct:   56 RSKPDMNASVNAPDWPRNGTVFKGWKSVEHPGWVKVDHPQNYWLPIQQYGNDVCH 110
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BLAST of mRNA_H-elongata_contig94751.16889.1 vs. uniprot
Match: A0A6H5KXI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXI4_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.830e-10
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    1 RTKPVMSASTPSSDWPRNGTLLKGWYVHEHPG 96
            RTKP M ++T S DWPRNGT+LKGWYV EHPG
Sbjct:   24 RTKPEMGSTTSSPDWPRNGTMLKGWYVAEHPG 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94751.16889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FVU9_ECTSI6.410e-2973.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZIY5_9STRA1.300e-2160.71Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835XUH0_9CHLO2.120e-2165.45Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A8J4FZJ0_9CHLO1.340e-2063.64Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A8J4G156_9CHLO1.530e-2063.64Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A150GII6_GONPE7.090e-2061.82Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A6H5KXI4_9PHAE1.830e-1075.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94751contigH-elongata_contig94751:1719..2167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue1.3e-18
Seed eggNOG ortholog2880.D7FVU9
EggNOG OGs2C7IW@1,2SCDY@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002230.1
Exons2
Model size183
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94751.16889.1prot_H-elongata_contig94751.16889.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94751 1719..2152 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931342.743489-CDS-H-elongata_contig94751:1718..18271622931342.743489-CDS-H-elongata_contig94751:1718..1827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94751 1719..1827 -
1691679797.5607724-CDS-H-elongata_contig94751:1718..18271691679797.5607724-CDS-H-elongata_contig94751:1718..1827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94751 1719..1827 -
1622931342.7596436-CDS-H-elongata_contig94751:2093..21521622931342.7596436-CDS-H-elongata_contig94751:2093..2152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94751 2094..2152 -
1691679797.5724158-CDS-H-elongata_contig94751:2093..21521691679797.5724158-CDS-H-elongata_contig94751:2093..2152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94751 2094..2152 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931342.77349-UTR-H-elongata_contig94751:2152..21671622931342.77349-UTR-H-elongata_contig94751:2152..2167Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94751 2153..2167 -
1691679797.5826433-UTR-H-elongata_contig94751:2152..21671691679797.5826433-UTR-H-elongata_contig94751:2152..2167Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94751 2153..2167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94751.16889.1

>prot_H-elongata_contig94751.16889.1 ID=prot_H-elongata_contig94751.16889.1|Name=mRNA_H-elongata_contig94751.16889.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MSASTPSSDWPRNGTLLKGWYVHEHPGWVKIHHPKSYWLPIMQHGKAVLH
EIKEG*
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mRNA from alignment at H-elongata_contig94751:1719..2167-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94751.16889.1 ID=mRNA_H-elongata_contig94751.16889.1|Name=mRNA_H-elongata_contig94751.16889.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=449bp|location=Sequence derived from alignment at H-elongata_contig94751:1719..2167- (Himanthalia elongata Himel1 dioecious)
AGAACAAAGCCAGTGATGAGCGCGAGTACGCCCTCGTCCGACTGGCCACG
CAACGGGACTCTCCTGAAGGGTTGGTGAGCACAAGTGTTTCTACACAGAC
GGAACTTCCCGTTCGACCAGGGTGCTACAATACGAGTTGTACGCACCCGT
TCGGCCGGTACAGCGCAGCAAATAAATCGGTCCTCTTGTGGGCACCAATA
AATGCGTTGTTTCCGCCGGCGGTCTCGCGTGTACTGCGCGACAAGCGTTC
TCACCATATTCCATTATACGGTGGTACGATACGGCAACGCAAACGACATC
CTTGTTTTAAGTCAACAGAGCTAAAATTCCCCCACGACAGGTACGTCCAT
GAACACCCGGGTTGGGTCAAGATCCACCACCCTAAGAGCTACTGGCTGCC
GATCATGCAGCATGGGAAGGCTGTCTTGCACGAGATCAAGGAGGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig94751:1719..2167-

>mRNA_H-elongata_contig94751.16889.1 ID=mRNA_H-elongata_contig94751.16889.1|Name=mRNA_H-elongata_contig94751.16889.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig94751:1719..2167- (Himanthalia elongata Himel1 dioecious)
ATGAGCGCGAGTACGCCCTCGTCCGACTGGCCACGCAACGGGACTCTCCT
GAAGGGTTGATGAGCGCGAGTACGCCCTCGTCCGACTGGCCACGCAACGG
GACTCTCCTGAAGGGTTGGTACGTCCATGAACACCCGGGTTGGGTCAAGA
TCCACCACCCTAAGAGCTACTGGCTGCCGATCATGCAGCATGGGAAGGCT
GTCTTGCACGAGATCAAGGAGGGGTGAGTACGTCCATGAACACCCGGGTT
GGGTCAAGATCCACCACCCTAAGAGCTACTGGCTGCCGATCATGCAGCAT
GGGAAGGCTGTCTTGCACGAGATCAAGGAGGGGTGA
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