mRNA_H-elongata_contig94751.16888.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94751.16888.1
Unique NamemRNA_H-elongata_contig94751.16888.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig94751.16888.1 vs. uniprot
Match: A0A6H5KWC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWC9_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 4.860e-31
Identity = 51/67 (76.12%), Postives = 58/67 (86.57%), Query Frame = 1
Query:    4 YYRDGSSCRHVANVRCPLLCINAEDDPICQMNLFPFDAARRNPFVIFVTTAAGGHIGFGEGFNPWGR 204
            Y+ DGSS R++A+VRCPLLCINAEDDP+CQ  LFP + A RNP+VIFV T AGGHIGFGEGFNPWGR
Sbjct:   47 YHGDGSSSRYLADVRCPLLCINAEDDPMCQTALFPLEEASRNPWVIFVITKAGGHIGFGEGFNPWGR 113          
BLAST of mRNA_H-elongata_contig94751.16888.1 vs. uniprot
Match: D7FVU4_ECTSI (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU4_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.110e-30
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 1
Query:    4 YYRDGSSCRHVANVRCPLLCINAEDDPICQMNLFPFDAARRNPFVIFVTTAAGGHIGFGEGFNPWGR 204
            Y+RDGSS R++A+VRCPLLCINAEDDPICQ  LFP + ARRNP+V+FV T AGGHIGFGEGFNPWGR
Sbjct:  328 YHRDGSSSRYLADVRCPLLCINAEDDPICQTALFPLEEARRNPWVMFVITKAGGHIGFGEGFNPWGR 394          
BLAST of mRNA_H-elongata_contig94751.16888.1 vs. uniprot
Match: A0A397UTY6_9GLOM (Alpha/Beta hydrolase protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397UTY6_9GLOM)

HSP 1 Score: 76.6 bits (187), Expect = 8.060e-15
Identity = 36/68 (52.94%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    4 YYRDGSSCRHVANVRCPLLCINAEDDPICQMNLFPFDAARRNPFVIFVTTAAGGHIGFGEGFNPWGRW 207
            YYRD SS  +V  VR PLLC+NAEDDPI      PFD +  NP+ I  TT  GGH+G+  GF    RW
Sbjct:  298 YYRDASSYFYVTKVRVPLLCLNAEDDPIVSAECLPFDESIYNPYCILATTYCGGHLGWFTGFRSPTRW 365          
BLAST of mRNA_H-elongata_contig94751.16888.1 vs. uniprot
Match: A0A1Y1WZN8_9FUNG (AB-hydrolase YheT n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1WZN8_9FUNG)

HSP 1 Score: 75.9 bits (185), Expect = 1.570e-14
Identity = 35/69 (50.72%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    1 DYYRDGSSCRHVANVRCPLLCINAEDDPICQMNLFPFDAARRNPFVIFVTTAAGGHIGFGEGFNPWGRW 207
            DYYRD S  R + +VR PLLC+NA DDP+      P++A R NP VI  TT  GGHIG+  G     RW
Sbjct:  315 DYYRDASCARFIPDVRVPLLCLNAIDDPVAYHECIPYEACRNNPNVILATTETGGHIGWFTGSTNVTRW 383          
BLAST of mRNA_H-elongata_contig94751.16888.1 vs. uniprot
Match: A0A4P9XWS5_9FUNG (Alpha/Beta hydrolase protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XWS5_9FUNG)

HSP 1 Score: 75.9 bits (185), Expect = 1.660e-14
Identity = 36/69 (52.17%), Postives = 43/69 (62.32%), Query Frame = 1
Query:    1 DYYRDGSSCRHVANVRCPLLCINAEDDPICQMNLFPFDAARRNPFVIFVTTAAGGHIGFGEGFNPWGRW 207
            DYYRD SS R +  VR PLLC+NA DDP+  +   PF+  + NPFVI   T  GGHIG+ EG     RW
Sbjct:  324 DYYRDASSSRWMTRVRVPLLCLNAHDDPVTDVEGAPFEEVKFNPFVIMALTGCGGHIGWFEGTLRPRRW 392          
BLAST of mRNA_H-elongata_contig94751.16888.1 vs. uniprot
Match: A0A485K8V6_9STRA (Aste57867_2374 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K8V6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.660e-13
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 DYYRDGSSCRHVANVRCPLLCINAEDDPICQMNLFPFDAARRNPFVIFVTTAAGGHIGF--GEGFNPW 198
            +Y+RD S  +++ NVR PLLCI+A DDP C   + P    R+NP +I V TA+GGH+GF  G G   W
Sbjct:  249 EYFRDASCVKYMHNVRVPLLCISALDDPFCPPGIIPGKLCRQNPKIILVKTASGGHLGFLQGNGMTMW 316          
BLAST of mRNA_H-elongata_contig94751.16888.1 vs. uniprot
Match: UPI001CB8F6A5 (embryogenesis-associated protein EMB8-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8F6A5)

HSP 1 Score: 72.0 bits (175), Expect = 4.000e-13
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    4 YYRDGSSCRHVANVRCPLLCINAEDDPICQMNLFPFDAARRNPFVIFVTTAAGGHIGFGEGFNPWGRW 207
            ++R  SS R V NV+ PLLCINA DDP+C     PFD  R+N  ++  TT  GGH+GF EG +    W
Sbjct:  335 FHRWASSVRLVMNVKVPLLCINAIDDPVCTEEAIPFDECRKNKNIVLATTQHGGHLGFFEGMSGKNLW 402          
BLAST of mRNA_H-elongata_contig94751.16888.1 vs. uniprot
Match: A0A8H7UCD0_MORIS (AB hydrolase-1 domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7UCD0_MORIS)

HSP 1 Score: 71.2 bits (173), Expect = 7.390e-13
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    1 DYYRDGSSCRHVANVRCPLLCINAEDDPICQMNLFPFDAARRNPFVIFVTTAAGGHIGFGEGFNPWGRW 207
            DYYRD SS   + NV+ PLLC NA DDPI  +   P+D  + NP V+  TT  GGH+G+ EG     RW
Sbjct:  317 DYYRDASSSVVIKNVKIPLLCFNALDDPISPLESIPYDEIKINPNVVLATTQHGGHLGWFEGIWSPTRW 385          
BLAST of mRNA_H-elongata_contig94751.16888.1 vs. uniprot
Match: UPI001CB8F521 (embryogenesis-associated protein EMB8-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8F521)

HSP 1 Score: 71.2 bits (173), Expect = 7.410e-13
Identity = 34/68 (50.00%), Postives = 40/68 (58.82%), Query Frame = 1
Query:    4 YYRDGSSCRHVANVRCPLLCINAEDDPICQMNLFPFDAARRNPFVIFVTTAAGGHIGFGEGFNPWGRW 207
            Y+R  SS R V NV+ PLLCINA DDP+C     PFD  R+N  ++  TT  GGHI F EG      W
Sbjct:  332 YHRWASSARLVMNVKVPLLCINAMDDPVCTNEAIPFDECRKNKNIVLATTQHGGHIAFFEGMAGKDLW 399          
BLAST of mRNA_H-elongata_contig94751.16888.1 vs. uniprot
Match: A0A397TBR9_9GLOM (Alpha/Beta hydrolase protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TBR9_9GLOM)

HSP 1 Score: 70.9 bits (172), Expect = 9.330e-13
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    4 YYRDGSSCRHVANVRCPLLCINAEDDPICQMNLFPFDAARRNPFVIFVTTAAGGHIGFGEGFNPWGRW 207
            YYRD SS  ++  V+ PLLC+NAEDDP+      P+D    NP +I  TT  GGH+G+  G+    RW
Sbjct:  298 YYRDASSSPYITKVKIPLLCLNAEDDPVASQECIPYDECIYNPNIILATTYYGGHLGWFTGWRNPTRW 365          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94751.16888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWC9_9PHAE4.860e-3176.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVU4_ECTSI1.110e-3079.10Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
A0A397UTY6_9GLOM8.060e-1552.94Alpha/Beta hydrolase protein n=2 Tax=Gigaspora Tax... [more]
A0A1Y1WZN8_9FUNG1.570e-1450.72AB-hydrolase YheT n=1 Tax=Basidiobolus meristospor... [more]
A0A4P9XWS5_9FUNG1.660e-1452.17Alpha/Beta hydrolase protein n=1 Tax=Thamnocephali... [more]
A0A485K8V6_9STRA1.660e-1348.53Aste57867_2374 protein n=1 Tax=Aphanomyces stellat... [more]
UPI001CB8F6A54.000e-1348.53embryogenesis-associated protein EMB8-like n=1 Tax... [more]
A0A8H7UCD0_MORIS7.390e-1349.28AB hydrolase-1 domain-containing protein n=1 Tax=M... [more]
UPI001CB8F5217.410e-1350.00embryogenesis-associated protein EMB8-like n=1 Tax... [more]
A0A397TBR9_9GLOM9.330e-1345.59Alpha/Beta hydrolase protein n=1 Tax=Glomus cerebr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94751contigH-elongata_contig94751:250..456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue1.3e-25
Seed eggNOG ortholog2880.D7FVU4
KEGG koko:K13696
EggNOG free text desc.poly(3-hydroxybutyrate) depolymerase activity
EggNOG OGsCOG0429@1,KOG1838@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-01_002180.1
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931342.6987653-CDS-H-elongata_contig94751:249..4561622931342.6987653-CDS-H-elongata_contig94751:249..456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94751 250..456 +
1691679797.5489626-CDS-H-elongata_contig94751:249..4561691679797.5489626-CDS-H-elongata_contig94751:249..456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94751 250..456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94751.16888.1prot_H-elongata_contig94751.16888.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94751 250..456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94751.16888.1

>prot_H-elongata_contig94751.16888.1 ID=prot_H-elongata_contig94751.16888.1|Name=mRNA_H-elongata_contig94751.16888.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
DYYRDGSSCRHVANVRCPLLCINAEDDPICQMNLFPFDAARRNPFVIFVT
TAAGGHIGFGEGFNPWGRW
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mRNA from alignment at H-elongata_contig94751:250..456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94751.16888.1 ID=mRNA_H-elongata_contig94751.16888.1|Name=mRNA_H-elongata_contig94751.16888.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig94751:250..456+ (Himanthalia elongata Himel1 dioecious)
GATTACTACCGCGACGGCTCGAGCTGTCGTCACGTGGCGAACGTGCGGTG CCCTCTTCTGTGCATCAACGCGGAGGACGATCCGATTTGTCAGATGAACC TGTTCCCTTTCGACGCGGCTCGTCGCAACCCCTTCGTGATCTTCGTCACC ACCGCCGCGGGTGGACACATCGGATTCGGAGAGGGCTTCAATCCATGGGG AAGGTGG
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Coding sequence (CDS) from alignment at H-elongata_contig94751:250..456+

>mRNA_H-elongata_contig94751.16888.1 ID=mRNA_H-elongata_contig94751.16888.1|Name=mRNA_H-elongata_contig94751.16888.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig94751:250..456+ (Himanthalia elongata Himel1 dioecious)
GATTACTACCGCGACGGCTCGAGCTGTCGTCACGTGGCGAACGTGCGGTG
CCCTCTTCTGTGCATCAACGCGGAGGACGATCCGATTTGTCAGATGAACC
TGTTCCCTTTCGACGCGGCTCGTCGCAACCCCTTCGTGATCTTCGTCACC
ACCGCCGCGGGTGGACACATCGGATTCGGAGAGGGCTTCAATCCATGGGG
AAGGTGGGATTACTACCGCGACGGCTCGAGCTGTCGTCACGTGGCGAACG
TGCGGTGCCCTCTTCTGTGCATCAACGCGGAGGACGATCCGATTTGTCAG
ATGAACCTGTTCCCTTTCGACGCGGCTCGTCGCAACCCCTTCGTGATCTT
CGTCACCACCGCCGCGGGTGGACACATCGGATTCGGAGAGGGCTTCAATC
CATGGGGAAGGTGG
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