mRNA_H-elongata_contig94745.16887.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94745.16887.1
Unique NamemRNA_H-elongata_contig94745.16887.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig94745.16887.1 vs. uniprot
Match: D7G4R4_ECTSI (CAAX prenyl protease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R4_ECTSI)

HSP 1 Score: 386 bits (992), Expect = 7.290e-131
Identity = 195/230 (84.78%), Postives = 209/230 (90.87%), Query Frame = 1
Query:    4 PALVCVLKIIELGGRFFYVYVWGFMFIFSVVMLTIAPVLIMPLFNKYTPLEDGELKSGIEALAARVRFPLMKLFVVDGSKRSAHSNAYFYGFFKNKRIVLFDTLINQADTTEIVSILGHELGHWQMSHTLQGFVITQTYLLASFSAFALATELGEALRLSFGFSTTAPLITLYLFFAVMWAPVDHLLGVLMNVLSRRNEFQADAYAVKLGYSKGLQSGLVKLQLENLGNM 693
            P L CVLKIIELGG+ FYVYVW FMF FS++MLTI P +IMP+FN Y+PLEDGELKS IE LA RV FPL  LF VDGSKRSAHSNAYFYGFFKNKRIVL+DTLI QADT EIVSILGHELGHW+MSHTLQGFVI+QTYLLASF AF LATELGE+LRLSFG+ST+A LITLYLFFAVMWAPVDHLLGV MNVLSR+NEF+ADAYAVKLGYSKGLQSGLVKLQLENLGNM
Sbjct:  213 PVLSCVLKIIELGGKHFYVYVWAFMFCFSILMLTIVPTVIMPMFNTYSPLEDGELKSSIENLAKRVSFPLTNLFSVDGSKRSAHSNAYFYGFFKNKRIVLYDTLIKQADTNEIVSILGHELGHWKMSHTLQGFVISQTYLLASFCAFGLATELGESLRLSFGYSTSATLITLYLFFAVMWAPVDHLLGVFMNVLSRKNEFEADAYAVKLGYSKGLQSGLVKLQLENLGNM 442          
BLAST of mRNA_H-elongata_contig94745.16887.1 vs. uniprot
Match: A0A3F2RNA5_9STRA (CAAX prenyl protease n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RNA5_9STRA)

HSP 1 Score: 275 bits (704), Expect = 1.740e-87
Identity = 140/233 (60.09%), Postives = 180/233 (77.25%), Query Frame = 1
Query:    4 PALVCVLKIIELGGRFFYVYVWGFMFIFSVVMLTIAPVLIMPLFNKYTPLEDGELKSGIEALAARVRFPLMKLFVVDGSKRSAHSNAYFYGFFKNKRIVLFDTLINQADTTEIVSILGHELGHWQMSHTLQGFVITQTYLLASFSAFALATELGEALRLSFGFS--TTAPLITLYLFFA-VMWAPVDHLLGVLMNVLSRRNEFQADAYAVKLGYSKGLQSGLVKLQLENLGNM 693
            P    ++ +I  GG +FY+YVW F+F+FSV+M+T+ PVLIMPLFNK+TPLE+GEL++ IEALAA + FPL KLFV DGSKRS+HSNAYF+GFFK+KRIVLFDTL+ QA   EIV++LGHELGHW++ HT QGFVI Q Y+LASF  F L     E L +SFGF+  +  P+I  +L F+  MWAPV+H+L  L+ + +R+NEFQADA+AV LG+   L+SGL KL +ENL NM
Sbjct:  202 PVTAALIYVIRWGGEYFYMYVWAFLFVFSVIMMTLYPVLIMPLFNKFTPLEEGELRTRIEALAASLNFPLTKLFVTDGSKRSSHSNAYFFGFFKSKRIVLFDTLLEQATHDEIVAVLGHELGHWKLWHTAQGFVIQQAYILASFYVFGLCMNDAE-LFVSFGFAGDSAKPVIIGFLLFSQTMWAPVEHVLSFLITLNTRKNEFQADAFAVDLGHDIALKSGLTKLAIENLSNM 433          
BLAST of mRNA_H-elongata_contig94745.16887.1 vs. uniprot
Match: M4BVP2_HYAAE (CAAX prenyl protease n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVP2_HYAAE)

HSP 1 Score: 275 bits (703), Expect = 3.830e-87
Identity = 142/233 (60.94%), Postives = 179/233 (76.82%), Query Frame = 1
Query:    4 PALVCVLKIIELGGRFFYVYVWGFMFIFSVVMLTIAPVLIMPLFNKYTPLEDGELKSGIEALAARVRFPLMKLFVVDGSKRSAHSNAYFYGFFKNKRIVLFDTLINQADTTEIVSILGHELGHWQMSHTLQGFVITQTYLLASFSAFALATELGEALRLSFGFS--TTAPLITLYLFFA-VMWAPVDHLLGVLMNVLSRRNEFQADAYAVKLGYSKGLQSGLVKLQLENLGNM 693
            P    ++ +I  GG +FY+YVW F+F+FSVVM+T+ PVLIMPLFNK+TPLE+GEL++ IEALAA ++FPL KLFV DGSKRS+HSNAYF+G FK+KRIVLFDTL+ QA   EIV+ILGHELGHWQ+ HT+QGFVI Q Y LASF  F L     E L  SFGF+  +  P+I  +L F+  MWAPV+H+L  L+ + +R+NEFQADA+AV LG+   L+SGL KL +ENL NM
Sbjct:  218 PVTAVLIYMIRWGGEYFYMYVWAFLFVFSVVMMTLYPVLIMPLFNKFTPLEEGELRTRIEALAASLKFPLTKLFVTDGSKRSSHSNAYFFGLFKSKRIVLFDTLLEQATHDEIVAILGHELGHWQLWHTVQGFVIQQVYTLASFYMFGLCMNNAE-LFASFGFAGDSAKPVIIGFLLFSQTMWAPVEHVLSFLITLNTRKNEFQADAFAVDLGFDAALKSGLTKLAIENLSNM 449          
BLAST of mRNA_H-elongata_contig94745.16887.1 vs. uniprot
Match: A0A3M6VKJ5_9STRA (CAAX prenyl protease n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKJ5_9STRA)

HSP 1 Score: 273 bits (699), Expect = 5.420e-87
Identity = 141/233 (60.52%), Postives = 177/233 (75.97%), Query Frame = 1
Query:    4 PALVCVLKIIELGGRFFYVYVWGFMFIFSVVMLTIAPVLIMPLFNKYTPLEDGELKSGIEALAARVRFPLMKLFVVDGSKRSAHSNAYFYGFFKNKRIVLFDTLINQADTTEIVSILGHELGHWQMSHTLQGFVITQTYLLASFSAFALATELGEALRLSFGF--STTAPLITLYLFFA-VMWAPVDHLLGVLMNVLSRRNEFQADAYAVKLGYSKGLQSGLVKLQLENLGNM 693
            P    ++ +I  GG +FY+YVW F+F+FSV+M+T+ PVLIMPLFNK+TPLE+GEL++ IEALAA + FPL KLFV DGSKRS+HSNAYF+G FK+KRIVLFDTL+ QA   EIV+ILGHELGHWQ+SHT Q FVI Q Y+LASF  F L     E L  SFGF   +  P+I  +L F+  MWAP++H+L  L+ + +RRNEFQADA+AV LG+   L+SGL KL +ENL NM
Sbjct:  181 PVTAVLIYVIRWGGEYFYMYVWFFLFVFSVIMMTLYPVLIMPLFNKFTPLEEGELRTRIEALAASLHFPLTKLFVTDGSKRSSHSNAYFFGLFKSKRIVLFDTLLKQATYDEIVAILGHELGHWQLSHTAQSFVIQQVYILASFYMFGLCMNDAE-LFASFGFVGDSAKPVIIGFLLFSQTMWAPIEHVLSFLITLNTRRNEFQADAFAVDLGHDVALKSGLTKLAIENLSNM 412          
BLAST of mRNA_H-elongata_contig94745.16887.1 vs. uniprot
Match: W2QFZ3_PHYPN (CAAX prenyl protease n=16 Tax=Phytophthora TaxID=4783 RepID=W2QFZ3_PHYPN)

HSP 1 Score: 274 bits (700), Expect = 1.210e-86
Identity = 141/233 (60.52%), Postives = 179/233 (76.82%), Query Frame = 1
Query:    4 PALVCVLKIIELGGRFFYVYVWGFMFIFSVVMLTIAPVLIMPLFNKYTPLEDGELKSGIEALAARVRFPLMKLFVVDGSKRSAHSNAYFYGFFKNKRIVLFDTLINQADTTEIVSILGHELGHWQMSHTLQGFVITQTYLLASFSAFALATELGEALRLSFGFS--TTAPLITLYLFFA-VMWAPVDHLLGVLMNVLSRRNEFQADAYAVKLGYSKGLQSGLVKLQLENLGNM 693
            P    ++ +I  GG +FY+YVW F+F+FSVVM+T+ PVLIMPLFNK+TPLE+GEL++ IEALAA + FPL KLFV DGSKRS+HSNAYF+G FK+KRIVLFDTL+ QA   EIV+ILGHELGHW++ HT QGFVI Q Y+LASF  F L     E L  SFGF+  ++ P+I  +L F+  MWAPV+H+L  L+ + +R+NEFQADA+AV LG+   L+SGL KL +ENL NM
Sbjct:  222 PVTAALIYVIRWGGEYFYMYVWAFLFVFSVVMMTLYPVLIMPLFNKFTPLEEGELRTRIEALAASLNFPLTKLFVTDGSKRSSHSNAYFFGLFKSKRIVLFDTLLEQATHDEIVAILGHELGHWKLWHTAQGFVIQQVYILASFYVFGLCMNDAE-LFASFGFAGDSSKPVIIGFLLFSQTMWAPVEHVLSFLITLNTRKNEFQADAFAVDLGHDVALKSGLTKLAIENLSNM 453          
BLAST of mRNA_H-elongata_contig94745.16887.1 vs. uniprot
Match: A0A7S2RC14_9STRA (CAAX prenyl protease n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RC14_9STRA)

HSP 1 Score: 273 bits (698), Expect = 3.530e-86
Identity = 140/231 (60.61%), Postives = 170/231 (73.59%), Query Frame = 1
Query:    1 APALVCVLKIIELGGRFFYVYVWGFMFIFSVVMLTIAPVLIMPLFNKYTPLEDGELKSGIEALAARVRFPLMKLFVVDGSKRSAHSNAYFYGFFKNKRIVLFDTLINQADTTEIVSILGHELGHWQMSHTLQGFVITQTYLLASFSAFALATELGEALRLSFGFSTTAPLITLYLFFAVMWAPVDHLLGVLMNVLSRRNEFQADAYAVKLGYSKGLQSGLVKLQLENLGNM 693
            AP L  +LKII+ GG +FY+YVW FMF FS+  LTI PV I PLFNKYTPL+DGELK  I +LAA+ +FPL KLFVVDGSKRS+HSNAYFYGFFKNKRIVLFDTLI Q  T+E+ ++LGHE+GHW   H +QGFVITQ Y+LA+F+AF         L  SFGF++   L+ L LFF  +WAPVD  L  ++ V +RRNEF AD Y+V L Y   LQ GLVK+ +ENL  +
Sbjct:  238 APVLFALLKIIDWGGPYFYLYVWAFMFGFSLFFLTIFPVYIQPLFNKYTPLDDGELKDRIFSLAAKCKFPLTKLFVVDGSKRSSHSNAYFYGFFKNKRIVLFDTLIKQMSTSELEAVLGHEIGHWAHGHVIQGFVITQLYILAAFTAFGYFLH-DPQLYASFGFTSQPTLVGLLLFFQTIWAPVDKFLNFVLTVNTRRNEFMADRYSVALDYGALLQRGLVKMFIENLSGL 467          
BLAST of mRNA_H-elongata_contig94745.16887.1 vs. uniprot
Match: D0NKQ3_PHYIT (CAAX prenyl protease n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NKQ3_PHYIT)

HSP 1 Score: 272 bits (695), Expect = 7.000e-86
Identity = 139/233 (59.66%), Postives = 178/233 (76.39%), Query Frame = 1
Query:    4 PALVCVLKIIELGGRFFYVYVWGFMFIFSVVMLTIAPVLIMPLFNKYTPLEDGELKSGIEALAARVRFPLMKLFVVDGSKRSAHSNAYFYGFFKNKRIVLFDTLINQADTTEIVSILGHELGHWQMSHTLQGFVITQTYLLASFSAFALATELGEALRLSFGFS--TTAPLITLYLFFA-VMWAPVDHLLGVLMNVLSRRNEFQADAYAVKLGYSKGLQSGLVKLQLENLGNM 693
            P    ++ +I  GG +FY+YVW F+F FSV+M+T+ PVLIMPLFNK+TPLE+G+L++ IEALAA + FPL KLFV DGSKRS+HSNAYF+G FK+KRIVLFDTL+ QA   EIV++LGHELGHW++ HT QGFVI Q Y+LASF  F L     E L  SFGF+  +  P+I  +L F+  MWAPV+H+L  LM + +R+NEFQADA+AV LG++  L+SGL KL +ENL NM
Sbjct:  223 PVTAALIYVIRWGGEYFYMYVWAFLFAFSVIMMTLYPVLIMPLFNKFTPLEEGDLRTRIEALAASLNFPLTKLFVTDGSKRSSHSNAYFFGLFKSKRIVLFDTLLEQATHDEIVAVLGHELGHWKLWHTAQGFVIQQVYILASFYVFGLCMNDAE-LFASFGFAGDSAKPVIIGFLLFSQTMWAPVEHVLSFLMTLNTRKNEFQADAFAVDLGHAVALKSGLTKLAIENLSNM 454          
BLAST of mRNA_H-elongata_contig94745.16887.1 vs. uniprot
Match: A0A225VQY6_9STRA (CAAX prenyl protease n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VQY6_9STRA)

HSP 1 Score: 271 bits (694), Expect = 7.310e-86
Identity = 140/233 (60.09%), Postives = 178/233 (76.39%), Query Frame = 1
Query:    4 PALVCVLKIIELGGRFFYVYVWGFMFIFSVVMLTIAPVLIMPLFNKYTPLEDGELKSGIEALAARVRFPLMKLFVVDGSKRSAHSNAYFYGFFKNKRIVLFDTLINQADTTEIVSILGHELGHWQMSHTLQGFVITQTYLLASFSAFALATELGEALRLSFGFS--TTAPLITLYLFFA-VMWAPVDHLLGVLMNVLSRRNEFQADAYAVKLGYSKGLQSGLVKLQLENLGNM 693
            P    ++ +I  GG +FY+YVW F+F FSVVM+T+ PV IMPLFNK+TPLE+GEL++ IEALAA++ FPL KLFV DGSKRS+HSNAYF+G FK+KRIVLFDTL+ QA   EIV+ILGHELGHW++ HT+QGFVI Q Y+LASF  F L     E L  SFGF+  +  P+I  +L F+  MWAPV+H+L  L+ + +R+NEFQADA+AV LG+   L+SGL KL +ENL NM
Sbjct:  212 PVTAVLIYVIRWGGEYFYMYVWAFLFTFSVVMMTLYPVFIMPLFNKFTPLEEGELRTRIEALAAKLHFPLAKLFVTDGSKRSSHSNAYFFGLFKSKRIVLFDTLLEQATHDEIVAILGHELGHWKLWHTMQGFVIQQVYVLASFYVFGLCMNDAE-LFTSFGFAGDSAKPVIIGFLLFSQTMWAPVEHVLSFLITLNTRKNEFQADAFAVGLGHDVALKSGLTKLAIENLSNM 443          
BLAST of mRNA_H-elongata_contig94745.16887.1 vs. uniprot
Match: A0A0P1ABC5_PLAHL (CAAX prenyl protease n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ABC5_PLAHL)

HSP 1 Score: 268 bits (685), Expect = 1.060e-84
Identity = 139/233 (59.66%), Postives = 175/233 (75.11%), Query Frame = 1
Query:    4 PALVCVLKIIELGGRFFYVYVWGFMFIFSVVMLTIAPVLIMPLFNKYTPLEDGELKSGIEALAARVRFPLMKLFVVDGSKRSAHSNAYFYGFFKNKRIVLFDTLINQADTTEIVSILGHELGHWQMSHTLQGFVITQTYLLASFSAFALATELGEALRLSFGFSTTA--PLITLYLFFA-VMWAPVDHLLGVLMNVLSRRNEFQADAYAVKLGYSKGLQSGLVKLQLENLGNM 693
            P    ++ +I  GG +FY+YVW F+F+FSV+M+T+ PVLIMPLFNK+TPLE+G L++ IEALA+ + FPL KLFV DGSKRS+HSNAYF+G F +KRIVLFDTL+ QA   EIV+ILGHELGHW++ HT Q FVI Q Y+LASF  F       E L  SFGF+  A  P+I  +L F+  MWAPV+H+L  LM + +R+NEFQADA+AV LGYS  L+SGL KL +ENL NM
Sbjct:  196 PVTSALIYVIRWGGEYFYMYVWAFLFVFSVIMMTLYPVLIMPLFNKFTPLEEGVLRTRIEALASSLNFPLTKLFVTDGSKRSSHSNAYFFGLFNSKRIVLFDTLLEQATNDEIVAILGHELGHWKLWHTAQSFVIQQLYILASFYVFGRCMNDAE-LFASFGFADDAAKPVIIGFLLFSQTMWAPVEHVLSFLMTLNTRKNEFQADAFAVDLGYSVSLKSGLTKLAIENLSNM 427          
BLAST of mRNA_H-elongata_contig94745.16887.1 vs. uniprot
Match: A0A484EA69_BRELC (CAAX prenyl protease n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EA69_BRELC)

HSP 1 Score: 267 bits (683), Expect = 5.350e-84
Identity = 138/233 (59.23%), Postives = 177/233 (75.97%), Query Frame = 1
Query:    4 PALVCVLKIIELGGRFFYVYVWGFMFIFSVVMLTIAPVLIMPLFNKYTPLEDGELKSGIEALAARVRFPLMKLFVVDGSKRSAHSNAYFYGFFKNKRIVLFDTLINQADTTEIVSILGHELGHWQMSHTLQGFVITQTYLLASFSAFALATELGEALRLSFGFS--TTAPLITLYLFFA-VMWAPVDHLLGVLMNVLSRRNEFQADAYAVKLGYSKGLQSGLVKLQLENLGNM 693
            P    ++ +I  GG +FY+YVW F+F+FSVVM+T+ PVLIMPLFNK+TPL+  EL++ IEALAA + FPL KLFV DGSKRS+HSNAYF+GFFK+KRIVLFDTL+ QA   EIV+ILGHELGHW++ HT QGFVI Q Y+LASF  F L     E L  SFGF+  +  P+I  +L F+  +WAPV+H+L  L+ + +R+NEF+ADA+AV LG+   L+SGL KL +ENL NM
Sbjct:  230 PVTAALIYVIRWGGAYFYMYVWAFLFVFSVVMMTLYPVLIMPLFNKFTPLDQSELRTRIEALAASLNFPLTKLFVTDGSKRSSHSNAYFFGFFKSKRIVLFDTLLEQATHDEIVAILGHELGHWKLWHTAQGFVIQQMYILASFYVFGLCMNDAE-LFASFGFAGDSAKPIIIGFLLFSQTVWAPVEHVLSFLITLNTRKNEFEADAFAVDLGHDIPLKSGLTKLAIENLSNM 461          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94745.16887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4R4_ECTSI7.290e-13184.78CAAX prenyl protease n=1 Tax=Ectocarpus siliculosu... [more]
A0A3F2RNA5_9STRA1.740e-8760.09CAAX prenyl protease n=3 Tax=Phytophthora kernovia... [more]
M4BVP2_HYAAE3.830e-8760.94CAAX prenyl protease n=2 Tax=Hyaloperonospora arab... [more]
A0A3M6VKJ5_9STRA5.420e-8760.52CAAX prenyl protease n=1 Tax=Peronospora effusa Ta... [more]
W2QFZ3_PHYPN1.210e-8660.52CAAX prenyl protease n=16 Tax=Phytophthora TaxID=4... [more]
A0A7S2RC14_9STRA3.530e-8660.61CAAX prenyl protease n=1 Tax=Rhizochromulina marin... [more]
D0NKQ3_PHYIT7.000e-8659.66CAAX prenyl protease n=2 Tax=Phytophthora infestan... [more]
A0A225VQY6_9STRA7.310e-8660.09CAAX prenyl protease n=1 Tax=Phytophthora megakary... [more]
A0A0P1ABC5_PLAHL1.060e-8459.66CAAX prenyl protease n=1 Tax=Plasmopara halstedii ... [more]
A0A484EA69_BRELC5.350e-8459.23CAAX prenyl protease n=1 Tax=Bremia lactucae TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94745contigH-elongata_contig94745:263..2515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score384.8
Seed ortholog evalue2.9e-104
Seed eggNOG ortholog2880.D7G4R4
Preferred nameZMPSTE24
KEGG rclassRC00037,RC00094,RC00141
KEGG koko:K06013,ko:K11450,ko:K16342
KEGG ReactionR01315,R01317,R02053,R07064,R07379,R07387,R07859,R09845
KEGG Pathwayko00564,ko00565,ko00590,ko00591,ko00592,ko00900,ko01100,ko01110,ko01130,ko04010,ko04014,ko04072,ko04217,ko04270,ko04370,ko04611,ko04664,ko04714,ko04724,ko04726,ko04730,ko04750,ko04912,ko04913,ko04921,ko05231,map00564,map00565,map00590,map00591,map00592,map00900,map01100,map01110,map01130,map04010,map04014,map04072,map04217,map04270,map04370,map04611,map04664,map04714,map04724,map04726,map04730,map04750,map04912,map04913,map04921,map05231
GOsGO:0000003,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005789,GO:0006508,GO:0006807,GO:0006996,GO:0006997,GO:0006998,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009056,GO:0009057,GO:0009987,GO:0010256,GO:0010467,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016485,GO:0016787,GO:0019538,GO:0019941,GO:0019953,GO:0022414,GO:0030163,GO:0030176,GO:0030327,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032504,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0048232,GO:0048609,GO:0051603,GO:0051604,GO:0051704,GO:0061024,GO:0070011,GO:0071586,GO:0071704,GO:0071840,GO:0080120,GO:0098827,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.CAAX-box protein processing
EggNOG OGsCOG0501@1,KOG2719@2759
EC3.1.1.4,3.4.24.84
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03036,ko04147
Hectar predicted targeting categorysignal anchor
Exons5
Model size714
Cds size714
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94745.16887.1prot_H-elongata_contig94745.16887.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94745 263..2515 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931342.5874596-CDS-H-elongata_contig94745:262..4391622931342.5874596-CDS-H-elongata_contig94745:262..439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94745 263..439 -
1691679797.4899857-CDS-H-elongata_contig94745:262..4391691679797.4899857-CDS-H-elongata_contig94745:262..439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94745 263..439 -
1622931342.6025424-CDS-H-elongata_contig94745:959..11721622931342.6025424-CDS-H-elongata_contig94745:959..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94745 960..1172 -
1691679797.5078945-CDS-H-elongata_contig94745:959..11721691679797.5078945-CDS-H-elongata_contig94745:959..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94745 960..1172 -
1622931342.6207337-CDS-H-elongata_contig94745:1575..16241622931342.6207337-CDS-H-elongata_contig94745:1575..1624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94745 1576..1624 -
1691679797.51807-CDS-H-elongata_contig94745:1575..16241691679797.51807-CDS-H-elongata_contig94745:1575..1624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94745 1576..1624 -
1622931342.6339972-CDS-H-elongata_contig94745:1858..19771622931342.6339972-CDS-H-elongata_contig94745:1858..1977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94745 1859..1977 -
1691679797.5280328-CDS-H-elongata_contig94745:1858..19771691679797.5280328-CDS-H-elongata_contig94745:1858..1977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94745 1859..1977 -
1622931342.6533494-CDS-H-elongata_contig94745:2359..25151622931342.6533494-CDS-H-elongata_contig94745:2359..2515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94745 2360..2515 -
1691679797.5383618-CDS-H-elongata_contig94745:2359..25151691679797.5383618-CDS-H-elongata_contig94745:2359..2515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94745 2360..2515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94745.16887.1

>prot_H-elongata_contig94745.16887.1 ID=prot_H-elongata_contig94745.16887.1|Name=mRNA_H-elongata_contig94745.16887.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=238bp
APALVCVLKIIELGGRFFYVYVWGFMFIFSVVMLTIAPVLIMPLFNKYTP
LEDGELKSGIEALAARVRFPLMKLFVVDGSKRSAHSNAYFYGFFKNKRIV
LFDTLINQADTTEIVSILGHELGHWQMSHTLQGFVITQTYLLASFSAFAL
ATELGEALRLSFGFSTTAPLITLYLFFAVMWAPVDHLLGVLMNVLSRRNE
FQADAYAVKLGYSKGLQSGLVKLQLENLGNMVKYYPV*
back to top

mRNA from alignment at H-elongata_contig94745:263..2515-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94745.16887.1 ID=mRNA_H-elongata_contig94745.16887.1|Name=mRNA_H-elongata_contig94745.16887.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2253bp|location=Sequence derived from alignment at H-elongata_contig94745:263..2515- (Himanthalia elongata Himel1 dioecious)
GCCCCGGCATTGGTGTGCGTGTTGAAGATCATCGAGCTCGGTGGGCGCTT CTTCTACGTGTACGTGTGGGGCTTCATGTTCATCTTCTCTGTCGTCATGT TGACCATCGCGCCCGTCCTCATAATGCCTCTCTTCAATAAGTACACCCCA CTCGAGGTGGGGAACAAACCGGAAGTAGTTCGGAAATATGCTCAAGATGT TATTATTGCTGGGTTGGTGCAGAGCACGACGTTGGCTCGACGAAGAGAAG AGAAGAGTACCGCGTGCCTTTTTATAGCCTCTATGAGCTTCGCGGTACTC TTCTCTTCTCTGCTGAAATTGCTGCACCAACCGAACGTTTGTTTCCCCCC CCGCCGGGCTATTTACCATTTTGCCTCGATTTTGGGATATTTCCGTTTGA GAACGTCTTCCCCCCTTGCAACCTCTGAGGGTGTTTTGTGTGCAGTCACA AATGCGAATATAACAATCTAACAATATAGCAATCTAACAATATAGCCATA TAACCATCTAGCCATATGTATACCGGTATACAATACAGGATGGAGAACTC AAGTCCGGCATCGAGGCTCTTGCTGCAAGGGTTAGGTTTCCCCTGATGAA GTTGTTCGTTGTCGATGGCTCCAAGCGCTCTGCGCACAGCAACGCCTACT TTTATGGGTGAGAAACTCGGAGATTCCGCGACTATTTGTAGTTGTATGTA TATGGTATATACAGTGACCAGCGGAGGAGCGGTCGGATCCAATTGCCTTT TGAATATTATACCCGACTTCACGTTCGCCGATGCTGCCGCTATGCTCGAC ATAAATTTCTGTGATGAGATAATAAGTTGGAGTCGGCGGAATAAGATGTT GTTGTTTACACATTTGTCGTGACGTCTCGATCCTGCCTTAGGTTCTTCAA AAACAAGAGGATTGTCCTCTTCGACACTCTAATAAATCAGGTGATCCAAA CGAAATCGATCGCTAAAGCTCTCTCTCTAGGGATTAAAATCACGGCATGA ATAGCATGGCATGGCATAATATAGGAGTGATCCTGGTGGTGACGAAACGC TCGTAGTGTTACTATTTAGTACCGTATTTACTATGTAGTCGTTAATATAT GATAGTAGTTAGTATGGTAGTTACTAGATGGAGGTTAGCGAAGGGAAACA GCATTTGACGGCTACAGTCTTAACCATGCATCGATGCTTCGAACTTGTCT TTTATAGTGTTGTCTGTTGTCAAGGTCAACAGAAGGTGATGTCTTGTTTG CCGCGCCTTCATAGGAATACCGTAGCGGTCAATTGATCAACCTTCCGTGC ACTTGTTGCAATCGCTTGGCGTTTATTGGTCACTTGTCGGAAGGCGGACA CTACGGAGATCGTGTCCATCCTAGGCCACGAACTGGGCCACTGGCAGATG TCCCACACGCTACAGGGCTTTGTGATCACGCAGACGTACCTCTTGGCGTC CTTTTCGGCCTTCGCCTTGGCCACCGAGCTCGGCGAGGCCCTTCGACTTT CATTCGGCTTCTCCACCACGGCCCCTTTGATCACACTCTACCTTTTCTTC GCTGTGGTAAGTGTCCGGTCCGGTCCAGTTGTAGTACGGCACGGCACGGT CCAGTACGGCACGGTCCAGTCCAGTCCAGTTGTAGATGTTGTAGGTGTCT TGTGCGCCAAGGCGATAGGAACGATGACACGATTGCACGATAATCCAAAC ATCGGTTTTGGTGCTCCGCTTAAATATTGGTTTGTATTGTACCGTACCGT ACCGTATTGGAATATTGTACTATACCGCACCGTGTTTGAATATTGTACTG TACCGTACCGTGTTTGAATATTGTACCGTACCGTACCGTATTTGAATATT GTGCTGTATCGTGCTGTACCGGTAACCAAACCACGCCAAGTGGTTGGAGG CAGCTAAGTATTCATCGGTCCTGACCCACCAAATTATATTAATAGACTAG ACCACACTAGAATATACTATTAATAGACTAGAGTCAGTGCTCTGCCTTAG AACGATCGCTCAACCGCGGGGTCCCTTTTCCCAACATATGCTGGAACTAT GAAATACCATACCATACCAACCGTAGATGTGGGCACCGGTCGACCATTTG CTCGGAGTGCTGATGAACGTGCTGTCGAGGAGAAACGAGTTCCAGGCAGA CGCATACGCGGTCAAGCTGGGTTATTCCAAGGGTCTGCAGTCTGGCCTGG TGAAGCTTCAATTGGAGAACCTTGGGAACATGGTGAAGTATTACCCTGTT TGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig94745:263..2515-

>mRNA_H-elongata_contig94745.16887.1 ID=mRNA_H-elongata_contig94745.16887.1|Name=mRNA_H-elongata_contig94745.16887.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1428bp|location=Sequence derived from alignment at H-elongata_contig94745:263..2515- (Himanthalia elongata Himel1 dioecious)
GCCCCGGCATTGGTGTGCGTGTTGAAGATCATCGAGCTCGGTGGGCGCTT
CTTCTACGTGTACGTGTGGGGCTTCATGTTCATCTTCTCTGTCGTCATGT
TGACCATCGCGCCCGTCCTCATAATGCCTCTCTTCAATAAGTACACCCCA
CTCGAGGCCCCGGCATTGGTGTGCGTGTTGAAGATCATCGAGCTCGGTGG
GCGCTTCTTCTACGTGTACGTGTGGGGCTTCATGTTCATCTTCTCTGTCG
TCATGTTGACCATCGCGCCCGTCCTCATAATGCCTCTCTTCAATAAGTAC
ACCCCACTCGAGGATGGAGAACTCAAGTCCGGCATCGAGGCTCTTGCTGC
AAGGGTTAGGTTTCCCCTGATGAAGTTGTTCGTTGTCGATGGCTCCAAGC
GCTCTGCGCACAGCAACGCCTACTTTTATGGGATGGAGAACTCAAGTCCG
GCATCGAGGCTCTTGCTGCAAGGGTTAGGTTTCCCCTGATGAAGTTGTTC
GTTGTCGATGGCTCCAAGCGCTCTGCGCACAGCAACGCCTACTTTTATGG
GTTCTTCAAAAACAAGAGGATTGTCCTCTTCGACACTCTAATAAATCAGG
TTCTTCAAAAACAAGAGGATTGTCCTCTTCGACACTCTAATAAATCAGGC
GGACACTACGGAGATCGTGTCCATCCTAGGCCACGAACTGGGCCACTGGC
AGATGTCCCACACGCTACAGGGCTTTGTGATCACGCAGACGTACCTCTTG
GCGTCCTTTTCGGCCTTCGCCTTGGCCACCGAGCTCGGCGAGGCCCTTCG
ACTTTCATTCGGCTTCTCCACCACGGCCCCTTTGATCACACTCTACCTTT
TCTTCGCTGTGGCGGACACTACGGAGATCGTGTCCATCCTAGGCCACGAA
CTGGGCCACTGGCAGATGTCCCACACGCTACAGGGCTTTGTGATCACGCA
GACGTACCTCTTGGCGTCCTTTTCGGCCTTCGCCTTGGCCACCGAGCTCG
GCGAGGCCCTTCGACTTTCATTCGGCTTCTCCACCACGGCCCCTTTGATC
ACACTCTACCTTTTCTTCGCTGTGATGTGGGCACCGGTCGACCATTTGCT
CGGAGTGCTGATGAACGTGCTGTCGAGGAGAAACGAGTTCCAGGCAGACG
CATACGCGGTCAAGCTGGGTTATTCCAAGGGTCTGCAGTCTGGCCTGGTG
AAGCTTCAATTGGAGAACCTTGGGAACATGGTGAAGTATTACCCTGTTTG
AATGTGGGCACCGGTCGACCATTTGCTCGGAGTGCTGATGAACGTGCTGT
CGAGGAGAAACGAGTTCCAGGCAGACGCATACGCGGTCAAGCTGGGTTAT
TCCAAGGGTCTGCAGTCTGGCCTGGTGAAGCTTCAATTGGAGAACCTTGG
GAACATGGTGAAGTATTACCCTGTTTGA
back to top