mRNA_H-elongata_contig9464.16881.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI) HSP 1 Score: 209 bits (531), Expect = 1.600e-58 Identity = 129/203 (63.55%), Postives = 151/203 (74.38%), Query Frame = 1
Query: 13 QVEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGN------RYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVDPRGGVPLLCAKPRGERLGHPAMFLSVGDVHIV-QLQQALEQAGVSVKFLARTLRCEG 600
++EVLCRVV+VDSEGLSDG S+KNT LAPKMLIV GGSRRAKA+LVS+VR ++ A A R+A XXXXXXXXXXXX R+VVV++A+EP+PV LDSGAFDVLLHDSLH+ LKWKQL NY VAH ECRVDPRG VPLLCAKPR ER+GHPAMFLSVG V++ Q+ Q +S F++ RC G
Sbjct: 798 ELEVLCRVVYVDSEGLSDGTSVKNTAVTLAPKMLIVTGGSRRAKAELVSYVRHAVEPAA--AGRRAXXXXXXXXXXXXXXXXXXXXXXXXXDVACRFVVVNKAMEPVPVALDSGAFDVLLHDSLHTHLKWKQLDNYGVAHVECRVDPRGDVPLLCAKPRAERVGHPAMFLSVGKVNVTPQILQVNWLETISQSFMSHH-RCLG 997
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: A0A836CFV8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA) HSP 1 Score: 124 bits (312), Expect = 5.360e-29 Identity = 81/247 (32.79%), Postives = 125/247 (50.61%), Query Frame = 1
Query: 13 QVEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVDPR---GGV---------PLLCA---KPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVRMEGTRL-ELEGPLCDAYFRVRQVVYQQYTIV 705
++ V RV ++D EGLSDGRS++N + + P+ L+++GGS +A + L R + A V R+ + + LD+ FDVL+HDSL+++L+W+ +K YE+A + V P+ GV P+L + GE G PA+F+S GDV + QL AL +AG++ A L G + V L +++GPL D YF VR ++Y+QYTIV
Sbjct: 641 ELVVRARVAYIDMEGLSDGRSVRNLLATVGPRQLVLVGGSVKAVSALSEDARDRHICSA--------------------------------VFTPRSGDTVRAALDTDVFDVLVHDSLYTRLRWQSVKGYELAQVDSAVAPQPRPSGVLGKRERPPPPILFPPQDREEGET-GRPAVFVSFGDVQLTQLSTALRKAGMTTALAAAKLTVSGTIVVTKGADGLLKIDGPLSDTYFAVRSIMYRQYTIV 854
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: UPI001F043033 (cleavage and polyadenylation specificity factor subunit 2-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F043033) HSP 1 Score: 94.0 bits (232), Expect = 2.270e-18 Identity = 66/248 (26.61%), Postives = 109/248 (43.95%), Query Frame = 1
Query: 16 VEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECR-----------------VDPRGGVPLLCAKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTV--RMEGTRLELEGPLCDAYFRVRQVVYQQYTI 702
+ + C +++D EG SDG SIK V + P+ L+V+ GS A L + RK +D + + V E + +S + ++L DSL S L++ Q ++ E+A + + VD VP+L P E GH +F++ D + +Q L++ G+ +F L C GGV R E R+ L+G +CD Y+ +RQ++Y Q+ I
Sbjct: 536 INIKCSYLYIDFEGRSDGESIKRIVSIVKPRQLVVIHGSPDATKHLAEYCRKNIDMEV------------------------------KTVFTPNTGETVDATRESHIYQIILRDSLVSSLQFSQTRDAEIAWVDGQLVREQLKSLVHDQENMDVDTFDSVPVLEQLPLAEIPGHDQVFIN--DPRLSDFKQILQKNGIQAEFNGGVLVCCGGVIAITRNEAGRIGLDGAICDEYYVIRQMLYDQFAI 751
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: A0A0A9Q413_ARUDO (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9Q413_ARUDO) HSP 1 Score: 89.7 bits (221), Expect = 1.380e-17 Identity = 63/240 (26.25%), Postives = 109/240 (45.42%), Query Frame = 1
Query: 16 VEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVDPRGGVPLLCAKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVR----------MEGTRLELEGPLCDAYFRVRQVVYQQYTIV 705
V+V C + ++D EG SDGRS+K+ + ++AP L+++ GS A L K D +V + E + V D A+ V L D L S + K+L +E+A + + + L+ P H ++ VGD+ + +Q LE G+ V+F+ LRC +TVR M ++ +EGPLC+ Y+++R+++Y Q+ ++
Sbjct: 107 VQVKCSLAYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMLFAKNPD---------------------------------LHVYAPQIEETIDVTSDLCAYKVQLSDKLMSNIISKKLGEHEIAWIDAEIG-KEDEKLILLPPSSTPPPHKSVL--VGDLKLADFKQFLENKGLQVEFVGGALRCGEYITVRKIGDSSQKGSMGSQQIVIEGPLCEDYYKIRELLYSQFYLL 310
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: B6U1S6_MAIZE (Cleavage and polyadenylation specificity factor subunit 2 n=8 Tax=Zea mays TaxID=4577 RepID=B6U1S6_MAIZE) HSP 1 Score: 91.3 bits (225), Expect = 1.860e-17 Identity = 66/240 (27.50%), Postives = 108/240 (45.00%), Query Frame = 1
Query: 16 VEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVDPRGGVPLLCAKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVRMEGT----------RLELEGPLCDAYFRVRQVVYQQYTIV 705
V+V C +V++D EG SDGRS+K+ + ++AP LI++ GS A L H K LD +V + E + V D A+ V L + L S + K+L +E+A + V + L+ P H + VGD+ + +Q LE G V+F LRC + VR G ++ +EGPLC+ Y+++R+++Y Q+ ++
Sbjct: 470 VQVKCSLVYMDFEGRSDGRSVKSIIAHVAPLKLILVHGSAEATEHLKMHCAKNLD---------------------------------LHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNIISKKLGEHEIAWVDAEVG-KEDEKLILLPPSSTPPPHKPVL--VGDLKLSDFKQFLENKGWQVEFAGGALRCGEYIMVRKVGDSILKGSTGSQQIVIEGPLCEDYYKIRELLYSQFYLL 673
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: A0A1E1XLS1_9ACAR (Cleavage and polyadenylation specificity factor subunit 2 n=18 Tax=Ixodidae TaxID=6939 RepID=A0A1E1XLS1_9ACAR) HSP 1 Score: 91.3 bits (225), Expect = 1.910e-17 Identity = 70/255 (27.45%), Postives = 114/255 (44.71%), Query Frame = 1
Query: 1 EWAVQVEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRV-------------------DPRGGVPLLCAKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVRM-EGTRLELEGPLCDAYFRVRQVVYQQYTIV 705
E ++Q++V + F+D EG SDG S++ V+ + P+ +I++ GS A + + R GA G V R E + +S + V L DSL S L++ + KN E+A + + +PR + +L P + GH +F V ++ + +Q L + GV +F L C G V VR E R+ +EG LC+ YF+VR+++YQQY I+
Sbjct: 517 ETSLQLDVNASLQFIDFEGRSDGESVRKIVQMMKPQRVILVRGSPEATQAMAAFCRSS--------------GAVQGR-----------------VFTPRMNELVDATTESHIYQVKLRDSLVSSLQFSRAKNAELAWLDGEIATEEHLAPDGMQEDILDVDEPRDSMYILQPLPPSQVPGHATIF--VNELKLSDFKQVLLRNGVQAEFSGGVLYCNGIVAVRRNEAGRINIEGCLCEDYFKVREILYQQYAII 738
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: A0A0E0CG53_9ORYZ (Cleavage and polyadenylation specificity factor subunit 2 n=3 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0CG53_9ORYZ) HSP 1 Score: 88.2 bits (217), Expect = 2.270e-16 Identity = 61/240 (25.42%), Postives = 107/240 (44.58%), Query Frame = 1
Query: 16 VEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVDPRGGVPLLCAKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVRMEGT----------RLELEGPLCDAYFRVRQVVYQQYTIV 705
V+V C + ++D EG SDGRS+K+ + ++AP L+++ GS A L H K D +V + E + V D ++ V L + L S + K+L +E+A + V + L P H ++ VGD+ + +Q L G+ V+F LRC +T+R G ++ +EGPLC+ Y+++R+++Y Q+ ++
Sbjct: 661 VQVKCSLAYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCSKSSD---------------------------------LHVYAPQIEETIDVTSDLCSYKVQLSEKLMSNVISKKLGEHEIAWVDAEVG-KADDKLTLLPPSSTPAAHKSVL--VGDLKLADFKQFLANKGLQVEFAGGALRCGEYITLRKIGDAGQKGSTGSQQIVIEGPLCEDYYKIRELLYSQFYLL 864
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: K3WHC0_GLOUD (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHC0_GLOUD) HSP 1 Score: 87.0 bits (214), Expect = 5.450e-16 Identity = 58/234 (24.79%), Postives = 112/234 (47.86%), Query Frame = 1
Query: 16 VEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHT--ECRVDPRGGVPLLCAK-PRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTV-RMEGTRLELEGPLCDAYFRVRQVVYQQYTIV 705
+ V R+ VD +G++DGR+I+N + N+ P+ LI++ G+ ++L V + P+ V +E + + D+ + + + +SL++ + ++++ +EVA+ + V VP+L G R H + LS G + + ++Q L +AG + KF L C GV + R + +EG L +Y+R+RQ++Y+Q+T+V
Sbjct: 541 IHVAARITHVDFDGVADGRAIRNCLSNVKPRKLILVHGTEDTTSELKRFVESSI---------------PM----------------CEAVFTPNVMECIDIESDTNVYKLAVKESLYTSVVFRKVGTHEVAYVTGQLAVTENSSVPVLQNMGEHGGRTLHEPILLSDGKMKLDVMKQVLGKAGFNAKFRGGMLVCNDGVVLKRALNNEIVMEGALSSSYYRIRQLLYEQFTLV 743
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: A0A8B8DS06_CRAVI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Crassostrea TaxID=6564 RepID=A0A8B8DS06_CRAVI) HSP 1 Score: 86.7 bits (213), Expect = 7.440e-16 Identity = 64/247 (25.91%), Postives = 112/247 (45.34%), Query Frame = 1
Query: 10 VQVEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLD-----------GDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVDPRGGVPLLCAKPRGERLGHPAMFLS---VGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVRM-EGTRLELEGPLCDAYFRVRQVVYQQYTIV 705
V +++ + ++D EG SDG SIK + + P+ LI++ G+ A L H RK G+ + R++ A +D L+ D+GA ++++ ++ ++ + DP VP L A P + +GH A+F++ + D +V LQ+ G+ +F+A L C V VR E R++LEG +C+ +F++RQ++Y QY IV
Sbjct: 527 VTLDINANIQYIDFEGRSDGESIKKILLQIKPRQLILVRGTTEATEALAEHCRKNEGVVQGNIFLPHIGEVVDVTRESHIFQVRLRDYVVSALEFAKAKETELAWIDGILDLSQGKADTGA----MYEAEEGEVTEEKSRKRTDGMLNGEEDPMEVVPTLEAMPHNQFVGHKAVFINEPKLSDFKLVLLQE-----GIQAEFIAGVLICNNNVAVRRNEAGRIQLEGTICEDFFKIRQILYNQYAIV 764
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Match: R7V1Z3_CAPTE (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Capitella teleta TaxID=283909 RepID=R7V1Z3_CAPTE) HSP 1 Score: 85.5 bits (210), Expect = 1.830e-15 Identity = 66/243 (27.16%), Postives = 106/243 (43.62%), Query Frame = 1
Query: 16 VEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADLVSHVRKQLDGDALRAARKAGGGAPLGXXXXXXXXXXXXADGNRYVVVDRALEPLPVGLDSGAFDVLLHDSLHSQLKWKQLKNYEVAHTECRVD------------PRGGVPLLCAKPRGERLGHPAMFLSVGDVHIVQLQQALEQAGVSVKFLARTLRCEGGVTVRM-EGTRLELEGPLCDAYFRVRQVVYQQYTIV 705
+E+ ++++D EG SDG S++ + + P+ LI++ GSR + L + R D +G V R E + +S F V L DS+ S L + + ++ E+A + +D P + P + H A+F V + + +Q L GV +F A L C V VR E RL+LEG LCD Y+R+RQ++Y+Q+ IV
Sbjct: 520 LELRANILYIDFEGRSDGDSMRKIISQVRPRQLILVRGSRESTESLAAFCRDAPD---------------IGK-----------------VYTPRLNELVDATTESKIFQVRLKDSVVSALNFSKARDAEIAWIDAMLDLNQAEAMEDGENPEDEEAVPVVIPTSQIRPHGAVF--VNEPKLSDFKQTLVNLGVQAEFSAGVLICNSVVAVRKNEAGRLQLEGTLCDDYYRIRQLLYEQFAIV 728 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9464.16881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9464.16881.1 >prot_H-elongata_contig9464.16881.1 ID=prot_H-elongata_contig9464.16881.1|Name=mRNA_H-elongata_contig9464.16881.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=236bp EWAVQVEVLCRVVFVDSEGLSDGRSIKNTVRNLAPKMLIVLGGSRRAKADback to top mRNA from alignment at H-elongata_contig9464:7931..9257- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig9464.16881.1 ID=mRNA_H-elongata_contig9464.16881.1|Name=mRNA_H-elongata_contig9464.16881.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1327bp|location=Sequence derived from alignment at H-elongata_contig9464:7931..9257- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig9464:7931..9257- >mRNA_H-elongata_contig9464.16881.1 ID=mRNA_H-elongata_contig9464.16881.1|Name=mRNA_H-elongata_contig9464.16881.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1416bp|location=Sequence derived from alignment at H-elongata_contig9464:7931..9257- (Himanthalia elongata Himel1 dioecious)back to top |