mRNA_H-elongata_contig9459.16880.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9459.16880.1
Unique NamemRNA_H-elongata_contig9459.16880.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig9459.16880.1 vs. uniprot
Match: D7FJI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI5_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 5.340e-30
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 1 
Query:    1 VRPYYGLYARSLQANGLEPKYFRTSQCSCNQYCRRVAGVSIAAGERGGAQSRSRAPTQGIPDRLEAGRIWVSLNRRAELLGTLPPTPLREKASWMGKPSDPQY 309
            VRPY GLYARSLQANG+EP +FR+S+CSC+    R    S+   +R  A +R+R+P  G+PDRLEAGR+  S  RRAELLG +PPT LR K +WM KP DPQY
Sbjct:  531 VRPYNGLYARSLQANGIEPAHFRSSRCSCHTTEHRQIDGSVLWPDRENA-ARTRSPVDGLPDRLEAGRVLDSFERRAELLGKMPPTTLRAKTAWMEKPGDPQY 632
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BLAST of mRNA_H-elongata_contig9459.16880.1 vs. uniprot
Match: A0A6H5L0G8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0G8_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 6.350e-29
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 1 
Query:    1 VRPYYGLYARSLQANGLEPKYFRTSQCSCNQYCRRVAGVSIAAGERGGAQSRSRAPTQGIPDRLEAGRIWVSLNRRAELLGTLPPTPLREKASWMGKPSDPQY 309
            +RPY+GLYARSLQANG+EP   R+S+CSC+    R    S+   +R  A +R+R+P  G+PDRLEAGR+  S  RRAELLG +PPT LR K +WM KP DPQY
Sbjct:  519 LRPYHGLYARSLQANGIEPAKIRSSRCSCHTTDNRQIDGSVLWPDRENA-ARTRSPVDGLPDRLEAGRVLDSFERRAELLGKMPPTTLRAKTAWMEKPGDPQY 620
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9459.16880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJI5_ECTSI5.340e-3059.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0G8_9PHAE6.350e-2957.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9459contigH-elongata_contig9459:37..420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931342.0131712-CDS-H-elongata_contig9459:36..1891622931342.0131712-CDS-H-elongata_contig9459:36..189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9459 37..189 +
1691679797.2275538-CDS-H-elongata_contig9459:36..1891691679797.2275538-CDS-H-elongata_contig9459:36..189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9459 37..189 +
1622931342.0340629-CDS-H-elongata_contig9459:264..4201622931342.0340629-CDS-H-elongata_contig9459:264..420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9459 265..420 +
1691679797.2452698-CDS-H-elongata_contig9459:264..4201691679797.2452698-CDS-H-elongata_contig9459:264..420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9459 265..420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9459.16880.1prot_H-elongata_contig9459.16880.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9459 37..420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9459.16880.1

>prot_H-elongata_contig9459.16880.1 ID=prot_H-elongata_contig9459.16880.1|Name=mRNA_H-elongata_contig9459.16880.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
VRPYYGLYARSLQANGLEPKYFRTSQCSCNQYCRRVAGVSIAAGERGGAQ
SRSRAPTQGIPDRLEAGRIWVSLNRRAELLGTLPPTPLREKASWMGKPSD
PQY
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mRNA from alignment at H-elongata_contig9459:37..420+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9459.16880.1 ID=mRNA_H-elongata_contig9459.16880.1|Name=mRNA_H-elongata_contig9459.16880.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=384bp|location=Sequence derived from alignment at H-elongata_contig9459:37..420+ (Himanthalia elongata Himel1 dioecious)
GTTCGGCCGTACTACGGCCTCTACGCGAGGTCTCTCCAGGCCAACGGTCT
CGAGCCGAAGTACTTCCGAACGTCGCAATGCAGCTGTAACCAGTACTGTC
GGCGTGTGGCCGGTGTCAGCATCGCAGCAGGTGAAAGAGGTGGCGCTCAG
TCCGTCGATTGTAAGCTGTTTTTAGACGAATCACTTCTCGAGAGGGGCAC
TCGCGCGGGGGATCCCCTGGCGGACGAGCGATCTAGAGCGCCTACTCAAG
GCATACCTGATAGGCTGGAAGCAGGTCGCATTTGGGTCTCCCTTAACCGA
CGCGCAGAGCTTCTCGGCACCCTACCACCAACGCCTCTCCGCGAGAAGGC
CTCTTGGATGGGGAAACCCAGTGACCCTCAATAC
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Coding sequence (CDS) from alignment at H-elongata_contig9459:37..420+

>mRNA_H-elongata_contig9459.16880.1 ID=mRNA_H-elongata_contig9459.16880.1|Name=mRNA_H-elongata_contig9459.16880.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig9459:37..420+ (Himanthalia elongata Himel1 dioecious)
GTTCGGCCGTACTACGGCCTCTACGCGAGGTCTCTCCAGGCCAACGGTCT
CGAGCCGAAGTACTTCCGAACGTCGCAATGCAGCTGTAACCAGTACTGTC
GGCGTGTGGCCGGTGTCAGCATCGCAGCAGGTGAAAGAGGTGGCGCTCAG
TCCGTTCGGCCGTACTACGGCCTCTACGCGAGGTCTCTCCAGGCCAACGG
TCTCGAGCCGAAGTACTTCCGAACGTCGCAATGCAGCTGTAACCAGTACT
GTCGGCGTGTGGCCGGTGTCAGCATCGCAGCAGGTGAAAGAGGTGGCGCT
CAGTCCCGATCTAGAGCGCCTACTCAAGGCATACCTGATAGGCTGGAAGC
AGGTCGCATTTGGGTCTCCCTTAACCGACGCGCAGAGCTTCTCGGCACCC
TACCACCAACGCCTCTCCGCGAGAAGGCCTCTTGGATGGGGAAACCCAGT
GACCCTCAATACCGATCTAGAGCGCCTACTCAAGGCATACCTGATAGGCT
GGAAGCAGGTCGCATTTGGGTCTCCCTTAACCGACGCGCAGAGCTTCTCG
GCACCCTACCACCAACGCCTCTCCGCGAGAAGGCCTCTTGGATGGGGAAA
CCCAGTGACCCTCAATAC
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