mRNA_H-elongata_contig94563.16877.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94563.16877.1
Unique NamemRNA_H-elongata_contig94563.16877.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig94563.16877.1 vs. uniprot
Match: D7G288_ECTSI (D-lactate dehydrogenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G288_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 1.910e-48
Identity = 82/91 (90.11%), Postives = 87/91 (95.60%), Query Frame = 1 
Query:    1 GYVELNEMLKEHGLWFPLDPGPGASLGGMTSCSCSGSTAVRYGTMKDNVLSMKVVLANGEVVKTSSRAKKSAAGYDLTRLFVGSEGTLGKI 273
            GY+ELNEMLKEHG+WFPLDPGPGASLGGM SCSCSGSTAVRYGTMKDNVLSM VVLA+G+ VKTSSRAKKS+AGYDLTRLFVGSEGTLG I
Sbjct:   75 GYLELNEMLKEHGMWFPLDPGPGASLGGMCSCSCSGSTAVRYGTMKDNVLSMTVVLADGQEVKTSSRAKKSSAGYDLTRLFVGSEGTLGII 165
[Close]
BLAST of mRNA_H-elongata_contig94563.16877.1 vs. uniprot
Match: A0A392M870_9FABA (D-lactate dehydrogenase (Cytochrome) mitochondrial-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M870_9FABA)

HSP 1 Score: 144 bits (362), Expect = 2.900e-42
Identity = 68/91 (74.73%), Postives = 83/91 (91.21%), Query Frame = 1 
Query:    1 GYVELNEMLKEHGLWFPLDPGPGASLGGMTSCSCSGSTAVRYGTMKDNVLSMKVVLANGEVVKTSSRAKKSAAGYDLTRLFVGSEGTLGKI 273
            G++ELNE L+ +GL+FPLDPGPGAS+GGM +  CSGS AVRYGTM+DNV+S+KVVLANG++VKT+SRA+KSAAGYDLTRL +GSEGTLG I
Sbjct:   19 GWMELNEYLEPYGLFFPLDPGPGASIGGMCATRCSGSLAVRYGTMRDNVISLKVVLANGDIVKTASRARKSAAGYDLTRLMIGSEGTLGVI 109
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BLAST of mRNA_H-elongata_contig94563.16877.1 vs. uniprot
Match: A0A835YUA6_9STRA (Putative d-lactate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUA6_9STRA)

HSP 1 Score: 150 bits (378), Expect = 3.280e-41
Identity = 68/91 (74.73%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:    1 GYVELNEMLKEHGLWFPLDPGPGASLGGMTSCSCSGSTAVRYGTMKDNVLSMKVVLANGEVVKTSSRAKKSAAGYDLTRLFVGSEGTLGKI 273
            GY+ELN+ L++HGLWFPLDPGPGAS+GGM++C CSGSTAVRYGTM++NV+SM  VL NG+++KT  RAKKSAAGYDLTRL VGSEGTL  I
Sbjct:  149 GYIELNDWLRDHGLWFPLDPGPGASVGGMSACRCSGSTAVRYGTMRENVVSMTAVLPNGDIIKTGGRAKKSAAGYDLTRLLVGSEGTLAVI 239
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BLAST of mRNA_H-elongata_contig94563.16877.1 vs. uniprot
Match: A0A4S8II81_MUSBA (FAD-binding PCMH-type domain-containing protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8II81_MUSBA)

HSP 1 Score: 142 bits (359), Expect = 1.050e-39
Identity = 67/91 (73.63%), Postives = 82/91 (90.11%), Query Frame = 1 
Query:    1 GYVELNEMLKEHGLWFPLDPGPGASLGGMTSCSCSGSTAVRYGTMKDNVLSMKVVLANGEVVKTSSRAKKSAAGYDLTRLFVGSEGTLGKI 273
            G++ELNE LK +GL+FPLDPGPGA++GGM +  CSGS AVRYGTM+DNV++++VVLANGEV+KT SRA+KSAAGYDLTRL +GSEGTLG I
Sbjct:  211 GWIELNEYLKPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLQVVLANGEVIKTGSRARKSAAGYDLTRLLIGSEGTLGII 301
[Close]
BLAST of mRNA_H-elongata_contig94563.16877.1 vs. uniprot
Match: A0A565CIS4_9BRAS (FAD-binding PCMH-type domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CIS4_9BRAS)

HSP 1 Score: 139 bits (351), Expect = 1.290e-39
Identity = 67/91 (73.63%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:    1 GYVELNEMLKEHGLWFPLDPGPGASLGGMTSCSCSGSTAVRYGTMKDNVLSMKVVLANGEVVKTSSRAKKSAAGYDLTRLFVGSEGTLGKI 273
            G +ELNE L+++GL+FPLDPGPGA+ GGM +  CSGS AVRYGTM+DNV+S+KVVL NG+VVKT+SRA+KSAAGYDLTRL +GSEGTLG I
Sbjct:   94 GXLELNEYLEQYGLFFPLDPGPGATKGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLIIGSEGTLGVI 184
[Close]
BLAST of mRNA_H-elongata_contig94563.16877.1 vs. uniprot
Match: UPI000D17E04B (D-lactate dehydrogenase [cytochrome], mitochondrial-like isoform X7 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=UPI000D17E04B)

HSP 1 Score: 144 bits (362), Expect = 1.650e-39
Identity = 67/91 (73.63%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:    1 GYVELNEMLKEHGLWFPLDPGPGASLGGMTSCSCSGSTAVRYGTMKDNVLSMKVVLANGEVVKTSSRAKKSAAGYDLTRLFVGSEGTLGKI 273
            G++ELNE LK HGL+FPLDPGPGAS+GGM +  CSGS AVRYGTM+DNV+S+K +L NG+VVKT++RA+KSAAGYDLTRL +GSEGTLG I
Sbjct:  178 GWIELNEFLKPHGLFFPLDPGPGASIGGMCATRCSGSLAVRYGTMRDNVISLKCILPNGDVVKTAARARKSAAGYDLTRLLIGSEGTLGLI 268
[Close]
BLAST of mRNA_H-elongata_contig94563.16877.1 vs. uniprot
Match: A0A6U4CM34_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CM34_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.470e-39
Identity = 67/91 (73.63%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:    1 GYVELNEMLKEHGLWFPLDPGPGASLGGMTSCSCSGSTAVRYGTMKDNVLSMKVVLANGEVVKTSSRAKKSAAGYDLTRLFVGSEGTLGKI 273
            GY+ELNE LK  GLWFPLDPGPGAS+GGM SC CSGSTAVRYGTM++NV+++ VV+A+G +VKT  R KKSAAGYDLTRL +G+EGTLG I
Sbjct:  158 GYLELNEYLKPKGLWFPLDPGPGASIGGMASCRCSGSTAVRYGTMRENVINLTVVMADGSIVKTQPRTKKSAAGYDLTRLMIGAEGTLGVI 248
[Close]
BLAST of mRNA_H-elongata_contig94563.16877.1 vs. uniprot
Match: A0A1S3TQK0_VIGRR (D-lactate dehydrogenase [cytochrome], mitochondrial isoform X4 n=2 Tax=Vigna TaxID=3913 RepID=A0A1S3TQK0_VIGRR)

HSP 1 Score: 144 bits (362), Expect = 2.650e-39
Identity = 68/91 (74.73%), Postives = 83/91 (91.21%), Query Frame = 1 
Query:    1 GYVELNEMLKEHGLWFPLDPGPGASLGGMTSCSCSGSTAVRYGTMKDNVLSMKVVLANGEVVKTSSRAKKSAAGYDLTRLFVGSEGTLGKI 273
            G++ELNE L+ +GL+FPLDPGPGAS+GGM +  CSGS AVRYGTM+DNV+S+KVVLANG++VKT+SRA+KSAAGYDLTRL +GSEGTLG I
Sbjct:  208 GWMELNEYLEPYGLFFPLDPGPGASIGGMCATRCSGSLAVRYGTMRDNVISLKVVLANGDIVKTASRARKSAAGYDLTRLMIGSEGTLGLI 298
[Close]
BLAST of mRNA_H-elongata_contig94563.16877.1 vs. uniprot
Match: A0A7S3M4Q2_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M4Q2_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.980e-39
Identity = 63/88 (71.59%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:    1 GYVELNEMLKEHGLWFPLDPGPGASLGGMTSCSCSGSTAVRYGTMKDNVLSMKVVLANGEVVKTSSRAKKSAAGYDLTRLFVGSEGTL 264
            GYVELNE+LK  GLWFPLDPGPGAS+GGM +C CSGSTAVRYG+M++NVL++  VL +G ++KT SRA+KS+AGYD+TRL +GSEGTL
Sbjct:   85 GYVELNEILKSKGLWFPLDPGPGASIGGMCACRCSGSTAVRYGSMRENVLNLTAVLPDGSIIKTGSRARKSSAGYDITRLLIGSEGTL 172
[Close]
BLAST of mRNA_H-elongata_contig94563.16877.1 vs. uniprot
Match: UPI001C4F1931 (D-lactate dehydrogenase [cytochrome], mitochondrial-like isoform X1 n=2 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4F1931)

HSP 1 Score: 142 bits (359), Expect = 3.400e-39
Identity = 68/91 (74.73%), Postives = 82/91 (90.11%), Query Frame = 1 
Query:    1 GYVELNEMLKEHGLWFPLDPGPGASLGGMTSCSCSGSTAVRYGTMKDNVLSMKVVLANGEVVKTSSRAKKSAAGYDLTRLFVGSEGTLGKI 273
            G++ELNE L+ +GL+FPLDPGPGAS+GGM +  CSGS AVRYGTM+DNV+++KVVLANG+VVKT SRA+KSAAGYDLTRL +GSEGTLG I
Sbjct:  221 GWMELNEYLEPYGLFFPLDPGPGASIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTGSRARKSAAGYDLTRLIIGSEGTLGVI 311
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94563.16877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G288_ECTSI1.910e-4890.11D-lactate dehydrogenase, putative n=1 Tax=Ectocarp... [more]
A0A392M870_9FABA2.900e-4274.73D-lactate dehydrogenase (Cytochrome) mitochondrial... [more]
A0A835YUA6_9STRA3.280e-4174.73Putative d-lactate dehydrogenase n=1 Tax=Tribonema... [more]
A0A4S8II81_MUSBA1.050e-3973.63FAD-binding PCMH-type domain-containing protein n=... [more]
A0A565CIS4_9BRAS1.290e-3973.63FAD-binding PCMH-type domain-containing protein n=... [more]
UPI000D17E04B1.650e-3973.63D-lactate dehydrogenase [cytochrome], mitochondria... [more]
A0A6U4CM34_9STRA2.470e-3973.63Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1S3TQK0_VIGRR2.650e-3974.73D-lactate dehydrogenase [cytochrome], mitochondria... [more]
A0A7S3M4Q2_9STRA2.980e-3971.59Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
UPI001C4F19313.400e-3974.73D-lactate dehydrogenase [cytochrome], mitochondria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94563contigH-elongata_contig94563:289..1143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.2
Seed ortholog evalue1.3e-35
Seed eggNOG ortholog2880.D7G288
Preferred nameDLD1
KEGG rclassRC00044
KEGG koko:K00102
KEGG ReactionR00197
KEGG Pathwayko00620,map00620
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003973,GO:0004457,GO:0004458,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006081,GO:0006082,GO:0006089,GO:0008144,GO:0008150,GO:0008152,GO:0008720,GO:0008891,GO:0009056,GO:0009438,GO:0009987,GO:0016020,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0016898,GO:0016899,GO:0017076,GO:0019154,GO:0019752,GO:0019866,GO:0030554,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0035639,GO:0036094,GO:0042180,GO:0042182,GO:0042802,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046185,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0051596,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901575,GO:1901615,GO:1901616,GO:1903457
EggNOG free text desc.cytokinin dehydrogenase activity
EggNOG OGsCOG0277@1,KOG1231@2759
EC1.1.2.4
COG Functional cat.C
BiGG ReactioniMM904.YDL174C,iND750.YDL174C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94563.16877.1prot_H-elongata_contig94563.16877.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94563 310..1143 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931341.7277925-UTR-H-elongata_contig94563:288..3091622931341.7277925-UTR-H-elongata_contig94563:288..309Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94563 289..309 +
1691679797.082392-UTR-H-elongata_contig94563:288..3091691679797.082392-UTR-H-elongata_contig94563:288..309Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94563 289..309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931341.7451062-CDS-H-elongata_contig94563:309..4101622931341.7451062-CDS-H-elongata_contig94563:309..410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94563 310..410 +
1691679797.0983002-CDS-H-elongata_contig94563:309..4101691679797.0983002-CDS-H-elongata_contig94563:309..410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94563 310..410 +
1622931341.763417-CDS-H-elongata_contig94563:992..11431622931341.763417-CDS-H-elongata_contig94563:992..1143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94563 993..1143 +
1691679797.106893-CDS-H-elongata_contig94563:992..11431691679797.106893-CDS-H-elongata_contig94563:992..1143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94563 993..1143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94563.16877.1

>prot_H-elongata_contig94563.16877.1 ID=prot_H-elongata_contig94563.16877.1|Name=mRNA_H-elongata_contig94563.16877.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MLKEHGLWFPLDPGPGASLGGMTSCSCSGSTAVRYGTMKDNVLSMKVVLA
NGEVVKTSSRAKKSAAGYDLTRLFVGSEGTLGKI
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mRNA from alignment at H-elongata_contig94563:289..1143+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94563.16877.1 ID=mRNA_H-elongata_contig94563.16877.1|Name=mRNA_H-elongata_contig94563.16877.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=855bp|location=Sequence derived from alignment at H-elongata_contig94563:289..1143+ (Himanthalia elongata Himel1 dioecious)
GGCTACGTGGAGCTGAACGAGATGCTGAAGGAGCACGGGCTATGGTTCCC
TCTGGATCCGGGACCCGGAGCGTCGCTTGGCGGAATGACCTCGTGCAGCT
GCTCAGGTTCGACGGCTGTGCGGTGAGTCGACCAACCTCTTTTTTCTTTT
TTTCACTAGTGGAAGTTGGTGTAGGGGGAGGGGATGTTTGGTCAGCCTCG
GGTAATTTGTTGAGGGGTTTTGTGACGAGAGAGGGGGGTTGGGAGGGAGG
GCGGCGTCACCCCCGAACTGCTGCTGTAATGTGCTGCGTTCGCATACCGG
TGTGCTCTTCTCTCTTTAAGGTCAGGGGCGGGGTAATCTGCCACGCCGTA
TTTTACCGTTAAATATTTTACCGTCAATAACGATTTTTTACCACCAGTGT
AATCTAGACTAATATTACAGTAGTAGAGCCTAGAGCTATAGGAATGCAAA
GTATCTGTGTTGGTGGAAACTCTCATGGATGTGGGAGTGAATGTTTGAGG
CAAGAGCAGCAAGACGATGTCTACGGAGGCGTGTGTGTTTTGTCGTGGCT
CTTTTACTTTAAAAAAATCATTGACTCATTCCAACCCTCCGAACCTTCAT
AGCACCATGAGAGGTGTAGTCCAGCGGACCAACTATCGTGAGATTCGAAT
GTGTGCTTATGATCCTACACAAGGCGCAAATACTAGGTACATGTTAACAC
ACAGGTACGGCACGATGAAAGACAACGTGCTGAGCATGAAGGTGGTGTTG
GCCAACGGAGAGGTGGTGAAGACCTCCAGCAGGGCCAAGAAGAGCGCCGC
AGGGTACGACCTCACGCGTCTCTTCGTCGGCAGCGAGGGCACTCTAGGTA
AGATA
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Coding sequence (CDS) from alignment at H-elongata_contig94563:289..1143+

>mRNA_H-elongata_contig94563.16877.1 ID=mRNA_H-elongata_contig94563.16877.1|Name=mRNA_H-elongata_contig94563.16877.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig94563:289..1143+ (Himanthalia elongata Himel1 dioecious)
ATGCTGAAGGAGCACGGGCTATGGTTCCCTCTGGATCCGGGACCCGGAGC
GTCGCTTGGCGGAATGACCTCGTGCAGCTGCTCAGGTTCGACGGCTGTGC
GATGCTGAAGGAGCACGGGCTATGGTTCCCTCTGGATCCGGGACCCGGAG
CGTCGCTTGGCGGAATGACCTCGTGCAGCTGCTCAGGTTCGACGGCTGTG
CGGTACGGCACGATGAAAGACAACGTGCTGAGCATGAAGGTGGTGTTGGC
CAACGGAGAGGTGGTGAAGACCTCCAGCAGGGCCAAGAAGAGCGCCGCAG
GGTACGACCTCACGCGTCTCTTCGTCGGCAGCGAGGGCACTCTAGGTAAG
ATAGTACGGCACGATGAAAGACAACGTGCTGAGCATGAAGGTGGTGTTGG
CCAACGGAGAGGTGGTGAAGACCTCCAGCAGGGCCAAGAAGAGCGCCGCA
GGGTACGACCTCACGCGTCTCTTCGTCGGCAGCGAGGGCACTCTAGGTAA
GATA
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