mRNA_H-elongata_contig9449.16872.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE) HSP 1 Score: 119 bits (298), Expect = 2.030e-31 Identity = 59/107 (55.14%), Postives = 76/107 (71.03%), Query Frame = 1
Query: 1 DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALRYVFVQELVKEGPV 321
DNGK TSSY+ +L N +SF+ GLQ LTA STMEAELV +A +KE++FC NM+ ELG +EF +PV D T+ L N +FS R KHIALR+ F++ELV EG +
Sbjct: 70 DNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKI 176
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 121 bits (304), Expect = 6.270e-30 Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 1
Query: 1 DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALRYVFVQELVKEGPV 321
DNGK TSSY+ +L N +SF+ GLQ LTA STMEAELV +A +KE++FC NM+ ELGS +EF +PV D T+ L N +FS R KHIALR+ F++ELV EG +
Sbjct: 516 DNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKI 622
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 119 bits (298), Expect = 1.200e-29 Identity = 59/107 (55.14%), Postives = 76/107 (71.03%), Query Frame = 1
Query: 1 DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALRYVFVQELVKEGPV 321
DNGK TSSY+ +L N +SF+ GLQ LTA STMEAELV +A +KE++FC NM+ ELG +EF +PV D T+ L N +FS R KHIALR+ F++ELV EG +
Sbjct: 295 DNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKI 401
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 119 bits (298), Expect = 4.650e-29 Identity = 59/107 (55.14%), Postives = 76/107 (71.03%), Query Frame = 1
Query: 1 DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALRYVFVQELVKEGPV 321
DNGK TSSY+ +L N +SF+ GLQ LTA STMEAELV +A +KE++FC NM+ ELG +EF +PV D T+ L N +FS R KHIALR+ F++ELV EG +
Sbjct: 855 DNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKI 961
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 114 bits (284), Expect = 3.680e-27 Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = 1
Query: 1 DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALRYVFVQELVKEGPV 321
DNGK TSSY+ +L N +SF+ GLQ LTA STMEAELV +A + E++F NM+ ELG +EF +PV D T+ L N +FS R KHIALR+ F++ELV EG +
Sbjct: 1524 DNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKI 1630
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 113 bits (282), Expect = 6.710e-27 Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = 1
Query: 1 DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALRYVFVQELVKEGPV 321
DN K SSYI+++ +SFK GLQSLTA ST+EAELV AA +KE++FC NM+ ELG EFRS P+ I+ T+ L V N FS R KH+ALR+ +++E+VKEG +
Sbjct: 549 DNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYIN-TATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRI 654
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5KCX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX7_9PHAE) HSP 1 Score: 105 bits (263), Expect = 1.270e-25 Identity = 53/95 (55.79%), Postives = 67/95 (70.53%), Query Frame = 1
Query: 1 DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALRY 285
DNGK TSSY+ +L N +SF+ GLQ LTA STMEAELV +A +KE++FC NM+ ELG +EF +PV D T+ L N +FS R KHIALR+
Sbjct: 41 DNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRF 135
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.480e-25 Identity = 55/107 (51.40%), Postives = 73/107 (68.22%), Query Frame = 1
Query: 1 DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALRYVFVQELVKEGPV 321
DNGK SSYI+++ S K GLQSLTA ST+EAELV +A +KE +FC NM+ ELG EF S P+ ID T+ L V N FS KH+ALR+ +++++VKEG +
Sbjct: 636 DNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRI 742
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE) HSP 1 Score: 104 bits (260), Expect = 3.860e-25 Identity = 53/94 (56.38%), Postives = 66/94 (70.21%), Query Frame = 1
Query: 1 DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALR 282
DNGK TSSY+ +L N +SF+ GLQ LTA STMEAELV +A +KE++FC NM+ ELG +EF +PV D T+ L N +FS R KHIALR
Sbjct: 172 DNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALR 265
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 1.350e-22 Identity = 50/96 (52.08%), Postives = 68/96 (70.83%), Query Frame = 1
Query: 34 ILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCRNMIMELGSMEEFRSVPVDIDKTSALRVARNGAFSPRAKHIALRYVFVQELVKEGPV 321
+L + ++FK GLQSLTAQSTMEAELV AA +KE++FC N++ ELG +EF VP+ D T+ L N + S R KHIALR+ F+++LV EG +
Sbjct: 224 MLYDALMAFKSGLQSLTAQSTMEAELVAAALAMKEAVFCSNILTELGFGKEFAQVPLYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKI 319 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9449.16872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9449.16872.1 >prot_H-elongata_contig9449.16872.1 ID=prot_H-elongata_contig9449.16872.1|Name=mRNA_H-elongata_contig9449.16872.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp DNGKPTSSYIVILVNGTISFKVGLQSLTAQSTMEAELVTAATPIKESLFCback to top mRNA from alignment at H-elongata_contig9449:2442..2762- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig9449.16872.1 ID=mRNA_H-elongata_contig9449.16872.1|Name=mRNA_H-elongata_contig9449.16872.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at H-elongata_contig9449:2442..2762- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig9449:2442..2762- >mRNA_H-elongata_contig9449.16872.1 ID=mRNA_H-elongata_contig9449.16872.1|Name=mRNA_H-elongata_contig9449.16872.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig9449:2442..2762- (Himanthalia elongata Himel1 dioecious)back to top |