mRNA_H-elongata_contig94486.16871.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig94486.16871.1 vs. uniprot
Match: D8LE02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE02_ECTSI) HSP 1 Score: 168 bits (426), Expect = 1.260e-46 Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 1
Query: 1 QHRRDLKLVVTSATLDAQRFSDFFGGVPVYNIPGRTFNVEKYFAKTPQEDYVDAAVKQALQIHLSSPPGDILIFMTGQEDIETTCEVMMQ 270
+ RRDLKLVVTSATLDA+RFSDFFGGVPVYNIPGRTF+VEKYF+KTPQEDYVDAAVKQALQIHLS PPGDILIFMTGQEDIETTCEV+ +
Sbjct: 936 EKRRDLKLVVTSATLDAKRFSDFFGGVPVYNIPGRTFHVEKYFSKTPQEDYVDAAVKQALQIHLSHPPGDILIFMTGQEDIETTCEVIAE 1025
BLAST of mRNA_H-elongata_contig94486.16871.1 vs. uniprot
Match: A0A835ZC27_9STRA (Asp-Glu-Ala-His box polypeptide 38, isoform CRA_d n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC27_9STRA) HSP 1 Score: 159 bits (401), Expect = 2.720e-43 Identity = 77/90 (85.56%), Postives = 82/90 (91.11%), Query Frame = 1
Query: 1 QHRRDLKLVVTSATLDAQRFSDFFGGVPVYNIPGRTFNVEKYFAKTPQEDYVDAAVKQALQIHLSSPPGDILIFMTGQEDIETTCEVMMQ 270
Q RRDL+LVVTSATLDA RFSDFFGGVPV+NIPGRTF V+ YFAKTPQEDYVDAAVKQALQIHLS PGDILIFMTGQEDIE TCEV+ +
Sbjct: 333 QRRRDLRLVVTSATLDATRFSDFFGGVPVFNIPGRTFKVDTYFAKTPQEDYVDAAVKQALQIHLSHGPGDILIFMTGQEDIEATCEVLAE 422
BLAST of mRNA_H-elongata_contig94486.16871.1 vs. uniprot
Match: A0A7S1CGU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CGU9_9STRA) HSP 1 Score: 138 bits (348), Expect = 4.490e-40 Identity = 64/90 (71.11%), Postives = 76/90 (84.44%), Query Frame = 1
Query: 1 QHRRDLKLVVTSATLDAQRFSDFFGGVPVYNIPGRTFNVEKYFAKTPQEDYVDAAVKQALQIHLSSPPGDILIFMTGQEDIETTCEVMMQ 270
Q RRDLKL+VTSAT+DA++F+ FFGGVP Y IPGRTF VE + AK+ +DYVDAAVKQ + IHLS PPGDIL+FMTGQEDIET CEV+ +
Sbjct: 50 QRRRDLKLIVTSATMDAEKFATFFGGVPTYTIPGRTFKVETFHAKSVFDDYVDAAVKQVMTIHLSFPPGDILVFMTGQEDIETVCEVLAE 139
BLAST of mRNA_H-elongata_contig94486.16871.1 vs. uniprot
Match: A0A7S3LB55_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LB55_9STRA) HSP 1 Score: 137 bits (344), Expect = 7.830e-40 Identity = 67/88 (76.14%), Postives = 75/88 (85.23%), Query Frame = 1
Query: 7 RRDLKLVVTSATLDAQRFSDFFGGVPVYNIPGRTFNVEKYFAKTPQEDYVDAAVKQALQIHLSSPPGDILIFMTGQEDIETTCEVMMQ 270
R DLKL+VTSATL A FSD+FGGVPV+ IPGRTF VE YFAK+ QEDYV AAVKQ LQIH +SPPGDILIFMTGQEDIE TC+V+ +
Sbjct: 8 RFDLKLIVTSATLSADIFSDYFGGVPVFRIPGRTFPVETYFAKSVQEDYVMAAVKQTLQIHFNSPPGDILIFMTGQEDIEGTCQVIAE 95
BLAST of mRNA_H-elongata_contig94486.16871.1 vs. uniprot
Match: A0A7S2R770_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R770_9STRA) HSP 1 Score: 147 bits (370), Expect = 8.600e-40 Identity = 67/90 (74.44%), Postives = 81/90 (90.00%), Query Frame = 1
Query: 1 QHRRDLKLVVTSATLDAQRFSDFFGGVPVYNIPGRTFNVEKYFAKTPQEDYVDAAVKQALQIHLSSPPGDILIFMTGQEDIETTCEVMMQ 270
Q RRDLKL+VTSAT++A+RFS+FFGGVPV++IPGRTF VEK +KTPQEDYV+AAVKQ L IH+ PPGDIL+FMTGQEDIETTCE++ +
Sbjct: 73 QRRRDLKLIVTSATMNAERFSEFFGGVPVFHIPGRTFPVEKLHSKTPQEDYVEAAVKQVLAIHMQYPPGDILVFMTGQEDIETTCEILAE 162
BLAST of mRNA_H-elongata_contig94486.16871.1 vs. uniprot
Match: A0A482UL54_9ARCH (ATP-dependent RNA helicase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UL54_9ARCH) HSP 1 Score: 144 bits (363), Expect = 9.200e-40 Identity = 66/88 (75.00%), Postives = 80/88 (90.91%), Query Frame = 1
Query: 7 RRDLKLVVTSATLDAQRFSDFFGGVPVYNIPGRTFNVEKYFAKTPQEDYVDAAVKQALQIHLSSPPGDILIFMTGQEDIETTCEVMMQ 270
RRDLKL+VTSAT+DA+RFS+FFGGVPV++IPGRTF VEK++A++ +DYVDAAVKQ L IHLS PPGD+L+FMTGQEDIE TCEV+ Q
Sbjct: 238 RRDLKLIVTSATMDAERFSNFFGGVPVFHIPGRTFPVEKHYARSVPDDYVDAAVKQVLAIHLSMPPGDVLVFMTGQEDIEATCEVLAQ 325
BLAST of mRNA_H-elongata_contig94486.16871.1 vs. uniprot
Match: A0A4D9DB89_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DB89_9STRA) HSP 1 Score: 149 bits (375), Expect = 9.640e-40 Identity = 71/90 (78.89%), Postives = 80/90 (88.89%), Query Frame = 1
Query: 1 QHRRDLKLVVTSATLDAQRFSDFFGGVPVYNIPGRTFNVEKYFAKTPQEDYVDAAVKQALQIHLSSPPGDILIFMTGQEDIETTCEVMMQ 270
Q RRDLKL+VTSATLD++RFSDFFGGVPV+ IPGRTF VE+ +AKT EDYVDAAVKQAL IHLS PPGDIL+FMTGQEDIET CEV+ +
Sbjct: 899 QRRRDLKLIVTSATLDSKRFSDFFGGVPVFEIPGRTFPVERVYAKTSVEDYVDAAVKQALAIHLSHPPGDILVFMTGQEDIETVCEVIAE 988
BLAST of mRNA_H-elongata_contig94486.16871.1 vs. uniprot
Match: A0A482RQU9_9ARCH (ATP-dependent RNA helicase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RQU9_9ARCH) HSP 1 Score: 137 bits (346), Expect = 1.710e-38 Identity = 64/88 (72.73%), Postives = 78/88 (88.64%), Query Frame = 1
Query: 7 RRDLKLVVTSATLDAQRFSDFFGGVPVYNIPGRTFNVEKYFAKTPQEDYVDAAVKQALQIHLSSPPGDILIFMTGQEDIETTCEVMMQ 270
RRDLKL+VTSATL+A++FS FFGGVPV+ IPGRTF VEK+FAK+P EDY++AAVKQ L IHLS P GDIL+FMTGQEDIE+ CE++ +
Sbjct: 82 RRDLKLIVTSATLNAEKFSAFFGGVPVFTIPGRTFPVEKFFAKSPPEDYLEAAVKQVLTIHLSYPVGDILVFMTGQEDIESCCEIIAE 169
BLAST of mRNA_H-elongata_contig94486.16871.1 vs. uniprot
Match: A0A425D8Z6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D8Z6_9STRA) HSP 1 Score: 135 bits (341), Expect = 2.260e-38 Identity = 62/90 (68.89%), Postives = 75/90 (83.33%), Query Frame = 1
Query: 1 QHRRDLKLVVTSATLDAQRFSDFFGGVPVYNIPGRTFNVEKYFAKTPQEDYVDAAVKQALQIHLSSPPGDILIFMTGQEDIETTCEVMMQ 270
Q RRD KL+VTSATLDA++F+ FFGGVP++ IPGRTF V+ +AK+P EDYVDAAVKQ + IHLS P GDIL+FMTGQEDIE TC V+ +
Sbjct: 63 QRRRDFKLIVTSATLDAEKFASFFGGVPLFTIPGRTFKVDTMYAKSPAEDYVDAAVKQVMTIHLSHPKGDILVFMTGQEDIEATCYVLAE 152
BLAST of mRNA_H-elongata_contig94486.16871.1 vs. uniprot
Match: A0A7S1YN02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YN02_9STRA) HSP 1 Score: 138 bits (348), Expect = 5.450e-38 Identity = 68/88 (77.27%), Postives = 74/88 (84.09%), Query Frame = 1
Query: 7 RRDLKLVVTSATLDAQRFSDFFGGVPVYNIPGRTFNVEKYFAKTPQEDYVDAAVKQALQIHLSSPPGDILIFMTGQEDIETTCEVMMQ 270
R DLKL+VTSATL A FS FFGGVPV+ IPGRTF VE YFAK QEDYV AAVKQA+QIH +SPPGDILIFMTGQEDIE TC+V+ Q
Sbjct: 99 RSDLKLIVTSATLSADTFSSFFGGVPVFRIPGRTFPVETYFAKGVQEDYVMAAVKQAIQIHFNSPPGDILIFMTGQEDIEGTCQVLAQ 186 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94486.16871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig94486.16871.1 >prot_H-elongata_contig94486.16871.1 ID=prot_H-elongata_contig94486.16871.1|Name=mRNA_H-elongata_contig94486.16871.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp QHRRDLKLVVTSATLDAQRFSDFFGGVPVYNIPGRTFNVEKYFAKTPQEDback to top mRNA from alignment at H-elongata_contig94486:79..1676- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig94486.16871.1 ID=mRNA_H-elongata_contig94486.16871.1|Name=mRNA_H-elongata_contig94486.16871.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1598bp|location=Sequence derived from alignment at H-elongata_contig94486:79..1676- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig94486:79..1676- >mRNA_H-elongata_contig94486.16871.1 ID=mRNA_H-elongata_contig94486.16871.1|Name=mRNA_H-elongata_contig94486.16871.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig94486:79..1676- (Himanthalia elongata Himel1 dioecious)back to top |