mRNA_H-elongata_contig94076.16842.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig94076.16842.1 vs. uniprot
Match: D8LKR2_ECTSI (Sodium/hydrogen exchanger family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR2_ECTSI) HSP 1 Score: 322 bits (824), Expect = 2.640e-102 Identity = 171/273 (62.64%), Postives = 200/273 (73.26%), Query Frame = 1
Query: 1 GAVGLTLGLIVEEDENIDEETRSLVLFYVAGIAALTLIINGSLAGSLVHYLGLDSSTTAETEIFSRACAAIESRLEHKLDLLKGDRFLGDADWELVWRYIPVSTSKSYWHRIRHGNIHLSEREEEDVDEIFHRHVSSNEKSGGLAGIADFFAHRARKWFVRRVLRLPGGVRYDELPRRLRQTWYMYHKNFHFLRDGEAGAGGGAFLAASAAMEEERHRRDMEALHLNAEPRMIVEAEAWANLEEDGEED-VVNLTKRPVSSTQRDHLDSVGMV 816
GAVGLTL LIV ED+ E+ R LVLFYVAGIAALTLIINGSL G LV LGLD STTAETE+F++AC+AIE+RLEHKLDLLKGDRFLGDADWE+VWRY+PVSTSK+YWHRIRHGNI+LS EEED+ I R NE GL G F AH+ KWF RR+LRLPGGV Y ELP RLR TWY YHK FH +SA ++ +HR+DME LNAEPRM++EAEAW+NL + D +++ + PVS T R HLD+VGM+
Sbjct: 310 GAVGLTLALIVVEDDRFSEDVRDLVLFYVAGIAALTLIINGSLCGYLVSALGLDRSTTAETEVFTKACSAIEARLEHKLDLLKGDRFLGDADWEMVWRYLPVSTSKTYWHRIRHGNINLSVEEEEDIHMI--RDGIVNE--AGLHGDVAFRAHQVHKWFTRRILRLPGGVGYCELPSRLRVTWYTYHKKFHH---------------SSATGDDNQHRKDMELQRLNAEPRMMLEAEAWSNLNAGDDPDTLLHPNQTPVSHTLRKHLDNVGML 563
BLAST of mRNA_H-elongata_contig94076.16842.1 vs. uniprot
Match: A0A6H5L6F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F4_9PHAE) HSP 1 Score: 308 bits (788), Expect = 1.420e-95 Identity = 170/279 (60.93%), Postives = 198/279 (70.97%), Query Frame = 1
Query: 1 GAVGLTLGLIVEEDENIDEETRSLVLFYVAGIAALTLIINGSLAGSLVHYLGLDS---STTAETEIFSRACAAIESRLEHKLDLLKGDRFLGDADWELVWRYIPVSTSKSYWHRIRHGNIHLSEREEEDVDEIFHRHVSSNEKSGGLAGIADFFAHRARKWFVRRVLRLPGGVRYDELPRRLRQTWYMYHK---NFHFLRDGEAGAGGGAFLAASAAMEEERHRRDMEALHLNAEPRMIVEAEAWANLEEDGEED-VVNLTKRPVSSTQRDHLDSVGMV 816
GAVGLTL LIV ED+ E R LVLFYVAGIAALTLIINGSL G LV LGLD STTAETE+F++AC+AIE+RLEHKLDLLKGDRFLGDADWE+VWRY+PVSTSK YWHRIRHGNI+LS EEED+ I R NE GL G+ F AH+ KWF RR+LRL GGV Y +LP RLR TWY YHK FH +SA ++ +HR+DME LNAEPRMI+EAEAW+NL + D +++ + PVS T R HLD+VGM+
Sbjct: 3 GAVGLTLALIVVEDDRFSEHVRDLVLFYVAGIAALTLIINGSLCGYLVSALGLDRHVLSTTAETEVFTKACSAIEARLEHKLDLLKGDRFLGDADWEMVWRYLPVSTSKMYWHRIRHGNINLSVEEEEDIHMI--RDGIVNE--AGLHGVLAFRAHQVHKWFTRRILRLRGGVGYCDLPSRLRVTWYTYHKASVKFHH---------------SSATGDDNQHRKDMELQRLNAEPRMILEAEAWSNLNAGDDPDTLLHPNQTPVSHTLRKHLDNVGML 262
BLAST of mRNA_H-elongata_contig94076.16842.1 vs. uniprot
Match: A0A6H5L0H9_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H9_9PHAE) HSP 1 Score: 179 bits (454), Expect = 9.580e-48 Identity = 89/196 (45.41%), Postives = 126/196 (64.29%), Query Frame = 1
Query: 1 GAVGLTLGLIVEEDENIDEETRSLVLFYVAGIAALTLIINGSLAGSLVHYLGLDSSTTAETEIFSRACAAIESRLEHKLDLLKGDRFLGDADWELVWRYIPVSTSKSYWHRIRHGNIHLSEREEEDVDEIFHRHVSSNEKSGGLAGIADFFAHRARKWFVRRVLRLPGGV-----RYDELPRRLRQTWYMYHKNFH 573
GAVGLTL L+V+E+E ID++ +V+F +AG+A +TL+ING+ G L+ Y +D +T A+TEIF RAC+A+ES+LEH ++ LK DRFLGDA+W +VWRY+P+ TS+ YWHRIR+G++ L+ E+E++ S K GL+ +L LPG R+ LP RLR TW YH+ FH
Sbjct: 414 GAVGLTLALVVQENEAIDDDVGDMVMFMMAGLAIMTLLINGTTCGKLLSYFRMDRATKAQTEIFIRACSAVESKLEHVVEELKKDRFLGDAEWPIVWRYVPIMTSRVYWHRIRYGSVVLANGEDEEI---------SQSKPSGLSSAT-----------ASAILSLPGNGGGGAGRFAHLPPRLRATWQSYHRKFH 589
BLAST of mRNA_H-elongata_contig94076.16842.1 vs. uniprot
Match: D7G372_ECTSI (Sodium/hydrogen exchanger family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G372_ECTSI) HSP 1 Score: 175 bits (444), Expect = 4.430e-46 Identity = 86/191 (45.03%), Postives = 125/191 (65.45%), Query Frame = 1
Query: 1 GAVGLTLGLIVEEDENIDEETRSLVLFYVAGIAALTLIINGSLAGSLVHYLGLDSSTTAETEIFSRACAAIESRLEHKLDLLKGDRFLGDADWELVWRYIPVSTSKSYWHRIRHGNIHLSEREEEDVDEIFHRHVSSNEKSGGLAGIADFFAHRARKWFVRRVLRLPGGVRYDELPRRLRQTWYMYHKNFH 573
G GLTLGLIV+E+E ID++ +V+F +AG+A +TL+ING+ G L+ Y +D +T A+TEIF RAC+A+ES+LEH ++ LK DRFLGDA+W +VWRY+P+ TS+ YWHRIR+G++ L++ E+E++ + +SS S L+ + G R+ LP RLR TW YH+ FH
Sbjct: 320 GGGGLTLGLIVQENEAIDDDVGDMVMFMIAGLAIMTLLINGTTCGKLLSYFRMDRATKAQTEIFIRACSAVESKLEHVVEELKKDRFLGDAEWPVVWRYVPIMTSRVYWHRIRYGSVVLAKGEDEEISQSQPSGLSSATASAMLSLLPGNGGG--------------GAGRFTHLPPRLRATWQSYHRKFH 496
BLAST of mRNA_H-elongata_contig94076.16842.1 vs. uniprot
Match: A0A836CH43_9STRA (Sodium/hydrogen exchanger family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH43_9STRA) HSP 1 Score: 167 bits (424), Expect = 2.070e-43 Identity = 85/177 (48.02%), Postives = 118/177 (66.67%), Query Frame = 1
Query: 1 GAVGLTLGLIVEEDENIDEETRSLVLFYVAGIAALTLIINGSLAGSLVHYLGLDSSTTAETEIFSRACAAIESRLEHKLDLLKGDRFLGDADWELVWRYIPVSTSKSYWHRIRHGNIHLSEREEEDVDEIFHRHVSSNEKSGGLAGIA---------DFFAHRARKWFVRRVLRLPG 504
GA+GLTL LI+ +++D++TR L F+ G+ ALTLII+G+LA L+ LGLD S +ETE+F+RAC A+E+RL+H +DL+KGDRFLGDA WELVWRY+PV T+K+YWHRIR GNI LS+ EE+D+ + + + AG + H+A W + V+ PG
Sbjct: 339 GAIGLTLALILYRQQSLDQDTRDLAFFFTWGVTALTLIIDGALAKPLLSRLGLDRSVGSETEVFTRACWAMEARLQHAVDLIKGDRFLGDAHWELVWRYLPVLTAKTYWHRIRQGNIVLSDVEEQDLRRMADEQDEAEWSAAMSAGFSRGRRLQYDIGTALHKAIHWVIEHVM--PG 513
BLAST of mRNA_H-elongata_contig94076.16842.1 vs. uniprot
Match: A0A7S2WTE2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTE2_9STRA) HSP 1 Score: 135 bits (339), Expect = 8.940e-35 Identity = 71/139 (51.08%), Postives = 104/139 (74.82%), Query Frame = 1
Query: 1 GAVGLTLGLIVEEDENI-DEETRS-LVLFYVAGIAALTLIINGSLAGSLVHYLGLDSSTTAETEIFSRACAAIESRLEHKLDL-LKGDRFLGDADWELVWRYIPVSTSKSYWHRIRHGNIHLSEREEEDVDEIFHRHVS 408
GA+GL+L LI+E+ E++ D ET + V+F++AGIA LTLIING+ L++YLGLD + AE+E+F +CA IE++LEH ++ LK DRFLGDAD+ +VWRYIPV +++ YWHRI+ + L++RE+E + RHV+
Sbjct: 77 GAIGLSLALIIEDTEDVQDTETNADRVVFHMAGIALLTLIINGTFMKPLINYLGLDRVSKAESEMFEHSCAVIEAKLEHFVENELKPDRFLGDADYSVVWRYIPVLSAQQYWHRIKSHKLILTQREKEVM-----RHVN 210
BLAST of mRNA_H-elongata_contig94076.16842.1 vs. uniprot
Match: A0A835Z8G2_9STRA (Sodium/hydrogen exchanger family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G2_9STRA) HSP 1 Score: 140 bits (354), Expect = 4.500e-34 Identity = 77/194 (39.69%), Postives = 111/194 (57.22%), Query Frame = 1
Query: 1 GAVGLTLGLIVEEDENIDEETRSLVLFYVAGIAALTLIINGSLAGSLVHYLGLDSSTTAE--TEIFSRACAAIESRLEHKLDLLKGDRFLGDADWELVWRYIPVSTSKSYWHRIRHGNIHLSEREEEDVDEIFHRHVSSNEKSGGLAGIADFFAHRAR----KWFVRRVLRLPGGVRYDELPRRLRQTWYMYHK 564
G + LTL L+V+++ + E + ++F+V G+ AL L+ING ++ +G+D S E +E+F+RACAAIE++LE + LK DRFLGDADW +VWRYIPV T+ SYWHRIR+G I L+ EE+ F+ G +A + R FVR L ++ LP RLR W +H+
Sbjct: 398 GILALTLALLVQQNVELPEAAGNRIMFHVCGLVALGLLINGGALWPVLRLIGMDRSAGDELASEVFARACAAIEAKLEQVAEELKQDRFLGDADWPIVWRYIPVMTAHSYWHRIRYGTIMLANGEEQ-----FNSAGDGGGAGGARGRLAPLWGVLRRIGRGLLFVRAAADLASASKFAHLPPRLRDVWQRFHR 586
BLAST of mRNA_H-elongata_contig94076.16842.1 vs. uniprot
Match: A0A7S2WUH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUH1_9STRA) HSP 1 Score: 135 bits (339), Expect = 6.390e-33 Identity = 71/139 (51.08%), Postives = 104/139 (74.82%), Query Frame = 1
Query: 1 GAVGLTLGLIVEEDENI-DEETRS-LVLFYVAGIAALTLIINGSLAGSLVHYLGLDSSTTAETEIFSRACAAIESRLEHKLDL-LKGDRFLGDADWELVWRYIPVSTSKSYWHRIRHGNIHLSEREEEDVDEIFHRHVS 408
GA+GL+L LI+E+ E++ D ET + V+F++AGIA LTLIING+ L++YLGLD + AE+E+F +CA IE++LEH ++ LK DRFLGDAD+ +VWRYIPV +++ YWHRI+ + L++RE+E + RHV+
Sbjct: 77 GAIGLSLALIIEDTEDVQDTETNADRVVFHMAGIALLTLIINGTFMKPLINYLGLDRVSKAESEMFEHSCAVIEAKLEHFVENELKPDRFLGDADYSVVWRYIPVLSAQQYWHRIKSHKLILTQREKEVM-----RHVN 210
BLAST of mRNA_H-elongata_contig94076.16842.1 vs. uniprot
Match: W7T4P8_9STRA (Salt overly sensitive 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4P8_9STRA) HSP 1 Score: 129 bits (323), Expect = 4.700e-30 Identity = 80/212 (37.74%), Postives = 113/212 (53.30%), Query Frame = 1
Query: 1 GAVGLTLGLIVEEDENIDEETRSLVLFYVAGIAALTLIINGSLAGSLVHYLGLDSSTTAETEIFSRACAAIESRLEHKLDLLKGDRFLGDADWELVWRYIPVSTSKSYWHRIRHGNIHLSEREEEDVDEIFHRHVSSNEKSGGLAGIADFFAHRARKWFVRRVL-----RLPGGV----------------RYDELPRRLRQTWYMYHKNFH 573
GAV LTL L+V ++E I EETR+L+LF+ AGI LT++INGS ++ L L++ T E E++ RA IE+ LE L LK D++LG+ADW +V+RY+PV + + YWHR+R G+I L E E V EK GG G R+ ++ +L G + +Y+ELP RLR W Y F+
Sbjct: 381 GAVSLTLALVVSQEEGIPEETRALILFFTAGIVLLTILINGSTCKLVLQKLKLNNPTRVEQELYIRAMNLIENELEVSLLKLKNDKYLGNADWNVVYRYLPVFSPQIYWHRVREGHICLDEAEIALVGRYVRE--EEEEKEGGEEGGWKEGRKRSHSLMGPTMVGSGPGKLLGPLFSCCGXXXXXXXXXXSKYEELPPRLRHRWREYTTRFN 590
BLAST of mRNA_H-elongata_contig94076.16842.1 vs. uniprot
Match: A0A4D9CZX9_9STRA (Na_H_Exchanger domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZX9_9STRA) HSP 1 Score: 129 bits (323), Expect = 6.050e-30 Identity = 79/214 (36.92%), Postives = 113/214 (52.80%), Query Frame = 1
Query: 1 GAVGLTLGLIVEEDENIDEETRSLVLFYVAGIAALTLIINGSLAGSLVHYLGLDSSTTAETEIFSRACAAIESRLEHKLDLLKGDRFLGDADWELVWRYIPVSTSKSYWHRIRHGNIHLSEREEEDVDEIFHRHVSSNEKSGGLAGIADFFAHRARKWFVRRVLRL---PGGV--------------------RYDELPRRLRQTWYMYHKNFH 573
GAV LTL L+V ++E I EETR+L+LF+ AGI LT++INGS ++ L L++ T E E++ RA IE+ LE L LK D++LG+ADW +V+RY+PV + + YWHR+R G+I L E E V R+V E+ + R R + + PG + +Y+ELP RLR W Y F+
Sbjct: 381 GAVSLTLALVVSQEEGIPEETRALILFFTAGIVLLTILINGSTCKLVLQKLKLNNPTRVEQELYIRAMNLIENELEVSLLKLKNDKYLGNADWNVVYRYLPVFSPQIYWHRVREGHICLDEAEIALVG----RYVREEEEXXXXXXXGGWKEGRKRSHSLMGHTMVGSGPGSLLSPLFSCCGXXXXXXXXXXSKYEELPPRLRHRWREYTSRFN 590 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94076.16842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig94076.16842.1 >prot_H-elongata_contig94076.16842.1 ID=prot_H-elongata_contig94076.16842.1|Name=mRNA_H-elongata_contig94076.16842.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=272bp GAVGLTLGLIVEEDENIDEETRSLVLFYVAGIAALTLIINGSLAGSLVHYback to top mRNA from alignment at H-elongata_contig94076:184..2426- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig94076.16842.1 ID=mRNA_H-elongata_contig94076.16842.1|Name=mRNA_H-elongata_contig94076.16842.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2243bp|location=Sequence derived from alignment at H-elongata_contig94076:184..2426- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig94076:184..2426- >mRNA_H-elongata_contig94076.16842.1 ID=mRNA_H-elongata_contig94076.16842.1|Name=mRNA_H-elongata_contig94076.16842.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1632bp|location=Sequence derived from alignment at H-elongata_contig94076:184..2426- (Himanthalia elongata Himel1 dioecious)back to top |