mRNA_H-elongata_contig94075.16841.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94075.16841.1
Unique NamemRNA_H-elongata_contig94075.16841.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig94075.16841.1 vs. uniprot
Match: D8LJM7_ECTSI (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM7_ECTSI)

HSP 1 Score: 316 bits (810), Expect = 2.770e-104
Identity = 148/198 (74.75%), Postives = 168/198 (84.85%), Query Frame = 1 
Query:   13 FAQLAQMEDHVRAVTSFLYTASNGMLWSASVDSTIRIWNTSSNVCEHIITQDNGGHSMAVVTLVLGQSAAEGTLKDYVISGSKDGTVGVFQVADGVLTYKHKCGDGISTLAVFDPTPGASALLLVGYEDGTIAVRNFPEFALAFELHPEATHIGHATPVRALLPFNNPSIDDSYFLSAAEEGSMICWKVHKLTDPSPS 606
            FAQLAQ+E H RA+TS + TASNGMLWS+S D TIRIWNT +N C H IT+DNGGH   V  L +GQSAAEGTL +YVISGSKDGT+GVFQ ADG LTYKHKCG G+S +A FDPTPG SALLLVGYEDGTIAVRNFPEFALAFE+HP + ++GH+ PV ALLPFNNPSIDD YFLSA E+G+M+CW VHKLTDPSP+
Sbjct:  245 FAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNACVHTITKDNGGHEGPVAALAIGQSAAEGTLAEYVISGSKDGTMGVFQAADGGLTYKHKCGTGVSAIAAFDPTPGTSALLLVGYEDGTIAVRNFPEFALAFEIHPTSLYVGHSKPVLALLPFNNPSIDDGYFLSAGEDGTMMCWNVHKLTDPSPA 442
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BLAST of mRNA_H-elongata_contig94075.16841.1 vs. uniprot
Match: A0A835YKE1_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKE1_9STRA)

HSP 1 Score: 117 bits (293), Expect = 9.860e-28
Identity = 70/183 (38.25%), Postives = 101/183 (55.19%), Query Frame = 1 
Query:   31 MEDHVRAVTSFLYTASNGMLWSASVDSTIRIWNTSSNVCEHIITQDNGGHSMAVVTLVLGQSAAEGTLKDYVISGSKDGTVGVFQVADGVLTYKHKCGDGISTLAVFDPTPGASALLLVGYEDGTIAVRNFPEFALAFELHPEATHIGHATPVRALLPFNNPSIDDSYFLSAAEEGSMICWKV 579
            +E HVR VT      +  MLWSAS D T+R+W+T++  C  II    G      VT + G  + EG   +Y+++GS D +V                    + L  F  +P +  LLL+G +DG+IA+R+FP F+LAFEL     ++GH TPVRALLP   P   + YF+S AE+G M+ W++
Sbjct:  227 LEGHVRGVTCLCMVGN--MLWSASKDHTVRVWDTATMACLGIIGSTGGLGHKGAVTCMAGPLSIEGEQGEYMVTGSADKSV--------------------TALTCFKTSP-SGPLLLIGSDDGSIALRDFPGFSLAFELSAAVLNVGHRTPVRALLPLEIPG-PNLYFMSGAEDGKMMMWQM 385
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BLAST of mRNA_H-elongata_contig94075.16841.1 vs. uniprot
Match: A0A7S3HF87_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HF87_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.960e-16
Identity = 62/196 (31.63%), Postives = 101/196 (51.53%), Query Frame = 1 
Query:    4 EGAFAQLAQMEDHVRAVTSFLYTASNGMLWSASVDSTIRIWNTSSNVCEHIITQDNGG--HSMAVVTL-VLGQSAAEGTLKDYVISGSKDGTVGVFQVADGVL-TYKHKCGDGISTLAVFDPTPGASALLLVGYEDGTIAVRNFPEFALAFELHPEATHIGHATPVRALLPFNNPSIDDSYFLSAAEEGSMICWKV 579
            +G F Q+  +E H+RAVT+ L   +  +LWS SVDST+R+W+ +S  C   +   NGG  H+ AV  L  +  + AE     ++ SG+ D  V ++     +L T  H  G  +++L  F  T G   +LL+G  DGTI VR+     + F L      I H   + +++      +  S F + +++G ++ WKV
Sbjct:  244 KGGFEQIMVLEGHIRAVTTVLLNGA--LLWSGSVDSTLRVWDLASGKCLATLAAANGGPGHTQAVTCLEFVPNTGAE----PFIASGAADNAVKLWGTTGSLLHTVTH--GAMVTSLKAFKDTLGGIQVLLIGLLDGTIHVRSCMSMKILFTLD---ASICHTKAIWSIV-----DLGQSCFGAGSDDGQIVVWKV 423
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BLAST of mRNA_H-elongata_contig94075.16841.1 vs. uniprot
Match: A0A7R9WQC1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQC1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.020e-11
Identity = 66/207 (31.88%), Postives = 98/207 (47.34%), Query Frame = 1 
Query:    4 EGAFAQLAQMEDHVRAVTSFLYTASNGMLWSASVDSTIRIWNTSSNVCEHIIT------QDNG--------GHSMAVVTLVLGQSAAEGTLKDYVISGSKDGTVGVFQVADGVLTYKHKCGDGISTLAVFDPTPGASALLLVGYEDGTIAVRNF------PEFALAFELHPEATHIGHATPVRALLPFNNPSIDDSYFLSAAEEGSM 564
            +G F     +  H R VT  L  A N +LWS+S+D +IRIW+ +S  C+H IT      Q +G        GH  AV  L+   S + GT   ++++ S DG +  +  + G        G+G+ T+A+       + +LL+G E G I VRN       P F L   L  + + +GH  PV+AL     PS   S F S   +G +
Sbjct:   59 KGGFVLSKTLAGHAREVTG-LAVAEN-VLWSSSIDGSIRIWDLASGNCQHAITNSGTNAQQSGQPPAGGGQGHKDAVTCLIPFPSPS-GT---FILTSSLDGDIKAWNGSTGQCVASESHGEGVVTIAMAADQKN-NQVLLIGLESGNIMVRNLLQTPNMPAFTLIMMLSLQYS-VGHRGPVKALA--QGPS---STFYSGGGDGKV 252
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BLAST of mRNA_H-elongata_contig94075.16841.1 vs. uniprot
Match: A0A7S0A247_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0A247_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.450e-6
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:   10 AFAQLAQMEDHVRAVTSF--LYTASNGMLWSASVDSTIRIWNTSSNVCEHIITQD---------NGGHSMAVVTLVLGQSAAEGTLKDYVISGSKDG 267
            AF     +  HVRAVT    + +AS  MLWS SVD TIR+W+ ++  C+H+I+ +         + GH  A+ +L+  +S   G   ++V+SGS DG
Sbjct:  236 AFTLRKTLAGHVRAVTGMTVVSSASLNMLWSCSVDETIRLWDLNTGDCKHLISSETTKNQQTGQSAGHQAAITSLINFESKGMG---NFVLSGSFDG 329
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94075.16841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LJM7_ECTSI2.770e-10474.75C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YKE1_9STRA9.860e-2838.25WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7S3HF87_9STRA5.960e-1631.63Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7R9WQC1_9STRA3.020e-1131.88Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S0A247_9STRA1.450e-637.11Hypothetical protein (Fragment) n=1 Tax=Rhizosolen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94075contigH-elongata_contig94075:28..2319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.9
Seed ortholog evalue4.5e-85
Seed eggNOG ortholog2880.D8LJM7
KEGG koko:K10267,ko:K10646
EggNOG free text desc.SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
EggNOG OGsKOG0274@1,KOG0274@2759
EC2.3.2.27
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons4
Model size618
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94075.16841.1prot_H-elongata_contig94075.16841.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94075 28..2319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931337.2458742-CDS-H-elongata_contig94075:27..1901622931337.2458742-CDS-H-elongata_contig94075:27..190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94075 28..190 +
1691679795.4033518-CDS-H-elongata_contig94075:27..1901691679795.4033518-CDS-H-elongata_contig94075:27..190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94075 28..190 +
1622931337.2641265-CDS-H-elongata_contig94075:756..9891622931337.2641265-CDS-H-elongata_contig94075:756..989Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94075 757..989 +
1691679795.4156659-CDS-H-elongata_contig94075:756..9891691679795.4156659-CDS-H-elongata_contig94075:756..989Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94075 757..989 +
1622931337.3031392-CDS-H-elongata_contig94075:1397..14801622931337.3031392-CDS-H-elongata_contig94075:1397..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94075 1398..1480 +
1691679795.4241579-CDS-H-elongata_contig94075:1397..14801691679795.4241579-CDS-H-elongata_contig94075:1397..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94075 1398..1480 +
1622931337.3273783-CDS-H-elongata_contig94075:2180..23191622931337.3273783-CDS-H-elongata_contig94075:2180..2319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94075 2181..2319 +
1691679795.432602-CDS-H-elongata_contig94075:2180..23191691679795.432602-CDS-H-elongata_contig94075:2180..2319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94075 2181..2319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94075.16841.1

>prot_H-elongata_contig94075.16841.1 ID=prot_H-elongata_contig94075.16841.1|Name=mRNA_H-elongata_contig94075.16841.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
MEGAFAQLAQMEDHVRAVTSFLYTASNGMLWSASVDSTIRIWNTSSNVCE
HIITQDNGGHSMAVVTLVLGQSAAEGTLKDYVISGSKDGTVGVFQVADGV
LTYKHKCGDGISTLAVFDPTPGASALLLVGYEDGTIAVRNFPEFALAFEL
HPEATHIGHATPVRALLPFNNPSIDDSYFLSAAEEGSMICWKVHKLTDPS
PSARS*
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mRNA from alignment at H-elongata_contig94075:28..2319+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94075.16841.1 ID=mRNA_H-elongata_contig94075.16841.1|Name=mRNA_H-elongata_contig94075.16841.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2292bp|location=Sequence derived from alignment at H-elongata_contig94075:28..2319+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGGGGCATTCGCGCAGCTCGCTCAGATGGAGGACCACGTGCGAGC
GGTGACATCTTTCCTGTATACGGCCAGCAACGGGATGCTGTGGTCGGCTT
CTGTGGACTCCACCATCCGCATCTGGAACACCAGCTCCAATGTCTGCGAG
CACATCATCACTCGTGAGTAGCCTTTTGTTTTGTAGTGTCCCCAGAAGGC
CAGGGGTAAAAATTGTCAAATGTCATGCTTGAACCGTCAGGGTCAAAACA
CTGTGAGATTCCCGTTTTCAGTGTTTTTTTTCTAACATGAGCAGTATATC
ATTTCCCTGTCCTGATAAAAAGGGTGACAGTCCGTCATCCCTTTTAAAAA
TCAAAACCTCCCGAATACTGCCTTCTAGCTCGACTCGGTACACGTGTCAC
CCTTCCTATCTGCGTGAGTTGCCTCTCCGCCCCGCTTAAGTACCCACAAT
GCAGGATTCTCGCGGCGTACATTATATTTCATCGCACTGGCCGCTCCACA
AACGGTGTGCGGCACCATCTTTTTACCCTGACTAGCGTTTGCGTTTGTTC
TCGGTGAGGGGGGCAGGGGTGGATCGACCTTTGCTTTTACTGCTTTTAAG
CGCAGTCCTGCGCATTCTCGAGAGCCCCCCGTTCGCGCCTGTCTGGTCTG
TCAATCCCAGTCCCTTCCCCAGTGTAACCCCATCTCTTATCCCAATGTGT
TTTTCTTTTTCGCCGCCCCCGCCGTTAAGAGGACAATGGGGGGCACTCGA
TGGCGGTCGTGACGCTGGTTTTGGGACAGAGCGCGGCCGAGGGTACCCTT
AAAGACTACGTCATCAGCGGCAGCAAGGACGGCACCGTGGGCGTTTTCCA
GGTTGCCGACGGGGTGCTCACGTACAAGCACAAATGCGGCGACGGGATTT
CCACGTTAGCGGTGTTCGATCCCACCCCAGGGGCTAGTGCTCTCTTGCTC
GTCGGATACGAGGTATGTGTGCGTTTTGCACGGCGTCTTTATTTCTGGGT
CAGGGGTTATTCGTATAATGAGGGTTTGAACGGGAGGGGTTGAGGCAGGG
CAAGGGCAACGAAGCACGGGGAGGGGGTGGCGGCGGCGGGCGTTCGAGGA
AAGATGCCTTTGATTTGTTCTTTGGCGAACAGTGGACGACGCTGTTGTCG
TCCCTTCGAAGGGTATCGCTACGTTTTTACGAGGGCTGCACTAGGTTGTT
GATTGGCGAAAGAACCCTTCCACCCCCCCCCCCCCAGCCTTCCGGTACGG
ATCTTGGGAGATTGGGCTTGTTTGGCTCTCACATCGAAAATGATTTTAAA
CATTTAACAACAACTCCCATTTCGGCTCCCCTTGCTCCTCGCTCTCCCGA
TTCGAATTTTGCTCTCGAAGGATGGCACCATCGCGGTCCGAAACTTCCCG
GAATTCGCGCTGGCCTTTGAGTTGCACCCAGAGGCGACACACATCGGCCA
TGCGTGAGTAGTTTTTAGCCTGTCTTCCTAGGCGCGTTCCCATAGCATTT
TTTTTTGTTACCGTGTCAGGCACATACTACACATTACAGTGTAAGGCGGT
TGTGGAGTATAGGCACTTTTTTTCGTAGTCTAGAATCTAAAGCCGGGGGA
AAAAATCGAGCAGGGGGATTTTAAGTTACGCGGCGGTACGGTTTCAGTTA
TTATTAAATCGTGCGCGCGACTGAAGCGACACTTCGCGATGCAAGTGTCG
CCGTGACTCCCTAGCGCAGCAGAAAAATAATCCTGGCACACTCCAATAAA
TTATAGTGTGTCCATGTGCAGCTGAAGAAAGGGGACTCTCGCCGACCGAT
ATCAACTTTATTTCGTATCTCGAGCAAATCTTTTCACACACAAACCAGGT
TGACACACAAGATACGACCGCCCGCGAATTATCGATTCCGCGACGTTCCA
GATTTGATCGCTGTGTGTGGGGAGGGGTCGGTAATGTTCGAGACGGCCAG
CATTTTTGAAAATTCCATTTTCATCCCTCATCTCTTAAAAGTTTCATATT
GATATGTACAGTATATATACATAAAAAATATTGCGTTTTTTTTTTATATA
TATATATATATGGTACGTAAAAAATACCTGGTAATTTTTTTTGAGACACC
TCTCTCGCCTCTTTTCTCCATTTGAACTGGCTCTTTTGTTTCCCGATGCG
CAGGACACCCGTGCGCGCCCTCCTTCCATTCAACAACCCGTCCATCGACG
ATAGCTACTTTTTGTCGGCGGCCGAAGAGGGCTCGATGATATGCTGGAAA
GTACACAAGCTCACCGATCCATCACCCAGCGCTCGCTCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig94075:28..2319+

>mRNA_H-elongata_contig94075.16841.1 ID=mRNA_H-elongata_contig94075.16841.1|Name=mRNA_H-elongata_contig94075.16841.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig94075:28..2319+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGGGGCATTCGCGCAGCTCGCTCAGATGGAGGACCACGTGCGAGC
GGTGACATCTTTCCTGTATACGGCCAGCAACGGGATGCTGTGGTCGGCTT
CTGTGGACTCCACCATCCGCATCTGGAACACCAGCTCCAATGTCTGCGAG
CACATCATCACTCATGGAGGGGGCATTCGCGCAGCTCGCTCAGATGGAGG
ACCACGTGCGAGCGGTGACATCTTTCCTGTATACGGCCAGCAACGGGATG
CTGTGGTCGGCTTCTGTGGACTCCACCATCCGCATCTGGAACACCAGCTC
CAATGTCTGCGAGCACATCATCACTCAGGACAATGGGGGGCACTCGATGG
CGGTCGTGACGCTGGTTTTGGGACAGAGCGCGGCCGAGGGTACCCTTAAA
GACTACGTCATCAGCGGCAGCAAGGACGGCACCGTGGGCGTTTTCCAGGT
TGCCGACGGGGTGCTCACGTACAAGCACAAATGCGGCGACGGGATTTCCA
CGTTAGCGGTGTTCGATCCCACCCCAGGGGCTAGTGCTCTCTTGCTCGTC
GGATACGAGAGGACAATGGGGGGCACTCGATGGCGGTCGTGACGCTGGTT
TTGGGACAGAGCGCGGCCGAGGGTACCCTTAAAGACTACGTCATCAGCGG
CAGCAAGGACGGCACCGTGGGCGTTTTCCAGGTTGCCGACGGGGTGCTCA
CGTACAAGCACAAATGCGGCGACGGGATTTCCACGTTAGCGGTGTTCGAT
CCCACCCCAGGGGCTAGTGCTCTCTTGCTCGTCGGATACGAGGATGGCAC
CATCGCGGTCCGAAACTTCCCGGAATTCGCGCTGGCCTTTGAGTTGCACC
CAGAGGCGACACACATCGGCCATGCGATGGCACCATCGCGGTCCGAAACT
TCCCGGAATTCGCGCTGGCCTTTGAGTTGCACCCAGAGGCGACACACATC
GGCCATGCGACACCCGTGCGCGCCCTCCTTCCATTCAACAACCCGTCCAT
CGACGATAGCTACTTTTTGTCGGCGGCCGAAGAGGGCTCGATGATATGCT
GGAAAGTACACAAGCTCACCGATCCATCACCCAGCGCTCGCTCATGAGAC
ACCCGTGCGCGCCCTCCTTCCATTCAACAACCCGTCCATCGACGATAGCT
ACTTTTTGTCGGCGGCCGAAGAGGGCTCGATGATATGCTGGAAAGTACAC
AAGCTCACCGATCCATCACCCAGCGCTCGCTCATGA
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