mRNA_H-elongata_contig94061.16839.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig94061.16839.1
Unique Name	mRNA_H-elongata_contig94061.16839.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig94061.16839.1 vs. uniprot
Match: D8LIL5_ECTSI (Cyclin D1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIL5_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 4.870e-16
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1

Query:    1 YMKKYVDFFANLCQQDYQFQRYRPSHIAAASILDARRALCI 123
            YM KYVDFFANLCQQ YQFQRY+PSHIAAA+IL ARRALCI
Sbjct:  205 YMNKYVDFFANLCQQGYQFQRYKPSHIAAAAILTARRALCI 245

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BLAST of mRNA_H-elongata_contig94061.16839.1 vs. uniprot
Match: A0A835ZBR6_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBR6_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.610e-15
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1

Query:    1 YMKKYVDFFANLCQQDYQFQRYRPSHIAAASILDARRALCI 123
            YMKKYV+FFANLCQQDY FQR+RPS IAAASIL ARRALCI
Sbjct:  146 YMKKYVEFFANLCQQDYSFQRHRPSTIAAASILAARRALCI 186

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BLAST of mRNA_H-elongata_contig94061.16839.1 vs. uniprot
Match: A0A7S2LEN5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LEN5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.180e-8
Identity = 25/41 (60.98%), Postives = 33/41 (80.49%), Query Frame = 1

Query:    1 YMKKYVDFFANLCQQDYQFQRYRPSHIAAASILDARRALCI 123
            Y++KY +FF NLC QDY F +YRPS +AAA I+ +R+ALCI
Sbjct:  216 YVRKYAEFFCNLCLQDYSFSQYRPSVLAAAIIVASRQALCI 256

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BLAST of mRNA_H-elongata_contig94061.16839.1 vs. uniprot
Match: A0A1E7FL21_9STRA (Cyclin-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FL21_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 8.910e-8
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1

Query:    1 YMKKYVDFFANLCQQDYQFQRYRPSHIAAASILDARRALCI 123
            YMKKY DFF NL  Q+Y FQ+Y PSH+AAA IL +R AL I
Sbjct:  160 YMKKYADFFCNLTLQEYSFQQYLPSHLAAAVILASRVALNI 200

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BLAST of mRNA_H-elongata_contig94061.16839.1 vs. uniprot
Match: K0RL28_THAOC (Cyclin N-terminal domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RL28_THAOC)

HSP 1 Score: 53.1 bits (126), Expect = 5.560e-7
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 1

Query:    1 YMKKYVDFFANLCQQDYQFQRYRPSHIAAASILDARRALCI 123
            Y+KKY DFF NL  Q+Y FQ+Y PSH+AAA +L +R AL I
Sbjct:  537 YIKKYADFFCNLTLQEYSFQKYLPSHLAAAILLASRVALQI 577

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BLAST of mRNA_H-elongata_contig94061.16839.1 vs. uniprot
Match: A0A7S2FS20_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FS20_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 6.230e-7
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1

Query:    1 YMKKYVDFFANLCQQDYQFQRYRPSHIAAASILDARRALCI 123
            Y++KY +FFANLC QDY +Q++ PS +AAA +  AR AL +
Sbjct:   68 YVQKYTEFFANLCMQDYLYQQFSPSLLAAAIVYSARHALSV 108

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BLAST of mRNA_H-elongata_contig94061.16839.1 vs. uniprot
Match: A0A7S0FMS6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FMS6_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 6.610e-7
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1

Query:    1 YMKKYVDFFANLCQQDYQFQRYRPSHIAAASILDARRALCI 123
            Y+KKY DFF NL  Q+Y FQ+Y PS +AAA ++ +R AL +
Sbjct:   61 YVKKYADFFCNLTMQEYSFQKYLPSQLAAAILMASREALSV 101

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BLAST of mRNA_H-elongata_contig94061.16839.1 vs. uniprot
Match: A0A1Z5JHV1_FISSO (Cyclin N-terminal domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHV1_FISSO)

HSP 1 Score: 52.8 bits (125), Expect = 7.420e-7
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1

Query:    1 YMKKYVDFFANLCQQDYQFQRYRPSHIAAASILDARRALCI 123
            Y+KKY +FF NL  QDY FQ+YRPS +AAA+++ +R AL I
Sbjct:  230 YLKKYAEFFCNLALQDYSFQQYRPSILAAAAVMASRVALQI 270

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BLAST of mRNA_H-elongata_contig94061.16839.1 vs. uniprot
Match: A0A8K1FAI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FAI4_PYTOL)

HSP 1 Score: 52.4 bits (124), Expect = 1.010e-6
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1

Query:    1 YMKKYVDFFANLCQQDYQFQRYRPSHIAAASILDARRAL 117
            Y KKY DFF +LC Q+YQFQ YRPS +AA+ +  +R+AL
Sbjct:  218 YYKKYADFFVDLCLQEYQFQAYRPSLVAASILAASRKAL 256

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BLAST of mRNA_H-elongata_contig94061.16839.1 vs. uniprot
Match: A0A7S1YXT2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YXT2_TRICV)

HSP 1 Score: 51.2 bits (121), Expect = 2.570e-6
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1

Query:    1 YMKKYVDFFANLCQQDYQFQRYRPSHIAAASILDARRAL 117
            Y+KKYV+FF NL  Q+Y FQ+Y P+H+AAA +L +R AL
Sbjct:  206 YVKKYVEFFCNLTLQEYSFQQYLPTHLAAAILLASRVAL 244

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig94061.16839.1 vs. uniprot

BLAST of mRNA_H-elongata_contig94061.16839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19


Match Name	E-value	Identity	Description
D8LIL5_ECTSI	4.870e-16	87.80	Cyclin D1 n=1 Tax=Ectocarpus siliculosus TaxID=288...	[more]
A0A835ZBR6_9STRA	2.610e-15	87.80	Cyclin-like protein n=1 Tax=Tribonema minus TaxID=...	[more]
A0A7S2LEN5_9STRA	1.180e-8	60.98	Hypothetical protein n=1 Tax=Leptocylindrus danicu...	[more]
A0A1E7FL21_9STRA	8.910e-8	65.85	Cyclin-like protein n=1 Tax=Fragilariopsis cylindr...	[more]
K0RL28_THAOC	5.560e-7	60.98	Cyclin N-terminal domain-containing protein n=1 Ta...	[more]
A0A7S2FS20_9STRA	6.230e-7	53.66	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S0FMS6_9STRA	6.610e-7	53.66	Hypothetical protein n=1 Tax=Minutocellus polymorp...	[more]
A0A1Z5JHV1_FISSO	7.420e-7	58.54	Cyclin N-terminal domain-containing protein n=2 Ta...	[more]
A0A8K1FAI4_PYTOL	1.010e-6	58.97	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A7S1YXT2_TRICV	2.570e-6	58.97	Hypothetical protein n=1 Tax=Trieres chinensis Tax...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig94061	contig	H-elongata_contig94061:1894..2016 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	123
Cds size	120
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931337.0955136-CDS-H-elongata_contig94061:1893..2013	1622931337.0955136-CDS-H-elongata_contig94061:1893..2013	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig94061 1894..2013 -
1691679795.3594904-CDS-H-elongata_contig94061:1893..2013	1691679795.3594904-CDS-H-elongata_contig94061:1893..2013	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig94061 1894..2013 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931337.1088178-UTR-H-elongata_contig94061:2013..2016	1622931337.1088178-UTR-H-elongata_contig94061:2013..2016	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig94061 2014..2016 -
1691679795.3671236-UTR-H-elongata_contig94061:2013..2016	1691679795.3671236-UTR-H-elongata_contig94061:2013..2016	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig94061 2014..2016 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig94061.16839.1	prot_H-elongata_contig94061.16839.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig94061 1894..2013 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig94061:1894..2016-
coding sequence from alignment at H-elongata_contig94061:1894..2016-

protein sequence of mRNA_H-elongata_contig94061.16839.1

>prot_H-elongata_contig94061.16839.1 ID=prot_H-elongata_contig94061.16839.1|Name=mRNA_H-elongata_contig94061.16839.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
MKKYVDFFANLCQQDYQFQRYRPSHIAAASILDARRALCI

mRNA from alignment at H-elongata_contig94061:1894..2016-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig94061.16839.1 ID=mRNA_H-elongata_contig94061.16839.1|Name=mRNA_H-elongata_contig94061.16839.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig94061:1894..2016- (Himanthalia elongata Himel1 dioecious)
TACATGAAGAAGTATGTGGACTTCTTCGCCAACCTCTGCCAGCAAGACTA
CCAGTTCCAGCGCTATCGACCTTCGCATATCGCAGCGGCATCGATCCTCG
ACGCGCGTAGGGCTCTGTGCATA

Coding sequence (CDS) from alignment at H-elongata_contig94061:1894..2016-

>mRNA_H-elongata_contig94061.16839.1 ID=mRNA_H-elongata_contig94061.16839.1|Name=mRNA_H-elongata_contig94061.16839.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig94061:1894..2016- (Himanthalia elongata Himel1 dioecious)
ATGAAGAAGTATGTGGACTTCTTCGCCAACCTCTGCCAGCAAGACTACCA
GTTCCAGCGCTATCGACCTTCGCATATCGCAGCGGCATCGATCCTCGACG
CGCGTAGGGCTCTGTGCATAATGAAGAAGTATGTGGACTTCTTCGCCAAC
CTCTGCCAGCAAGACTACCAGTTCCAGCGCTATCGACCTTCGCATATCGC
AGCGGCATCGATCCTCGACGCGCGTAGGGCTCTGTGCATA