mRNA_H-elongata_contig94031.16836.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94031.16836.1
Unique NamemRNA_H-elongata_contig94031.16836.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig94031.16836.1 vs. uniprot
Match: A0A6H5L4D5_9PHAE (PFU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4D5_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.710e-17
Identity = 55/100 (55.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:  220 GFVPDSGTPPLVDVATGSADHAVRVFTPDPERALRGDSLKEAEEAAAGRVEEYKCSGRVSEV--------------SSLPSVSEMGVMVGEEDGQLSAFA 477
            G + D G+  + DVATGSADHAVRVFTPD ER LRGD LKEA EA  G      C G  + V               +LPS SEM VMVG EDGQLSAFA
Sbjct:  405 GGISDEGS--VADVATGSADHAVRVFTPDSERFLRGDRLKEALEAVGGGSSSDACGGDAAAVPGSGALFGGRSGGGENLPSTSEMSVMVGAEDGQLSAFA 502
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94031.16836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4D5_9PHAE1.710e-1755.00PFU domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94031contigH-elongata_contig94031:58..1064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue7.6e-32
Seed eggNOG ortholog2880.D8LHW3
Preferred namePLAA
KEGG rclassRC00002,RC00010,RC00043,RC02750,RC02798,RC03314
KEGG koko:K01090,ko:K01955,ko:K11412,ko:K14018
KEGG ReactionR00256,R00575,R01395,R10948,R10949
KEGG Pathwayko00240,ko00250,ko01100,ko04141,map00240,map00250,map01100,map04141
KEGG ModuleM00051
GOsGO:0000726,GO:0001558,GO:0002237,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006325,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006631,GO:0006644,GO:0006690,GO:0006692,GO:0006693,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006914,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009987,GO:0010033,GO:0010498,GO:0010517,GO:0010518,GO:0010605,GO:0010720,GO:0010975,GO:0010976,GO:0010992,GO:0016004,GO:0016005,GO:0016043,GO:0016236,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0019222,GO:0019538,GO:0019637,GO:0019725,GO:0019752,GO:0019941,GO:0022008,GO:0022603,GO:0022604,GO:0023052,GO:0030154,GO:0030163,GO:0030234,GO:0030307,GO:0030334,GO:0030335,GO:0031323,GO:0031324,GO:0031344,GO:0031346,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031982,GO:0032182,GO:0032268,GO:0032269,GO:0032429,GO:0032430,GO:0032446,GO:0032496,GO:0032501,GO:0032502,GO:0032787,GO:0032879,GO:0033554,GO:0033559,GO:0033993,GO:0034517,GO:0034641,GO:0035973,GO:0036211,GO:0040008,GO:0040012,GO:0040017,GO:0042221,GO:0042592,GO:0043085,GO:0043130,GO:0043161,GO:0043162,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043230,GO:0043231,GO:0043412,GO:0043436,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044421,GO:0044424,GO:0044464,GO:0045202,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045927,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048638,GO:0048639,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051270,GO:0051272,GO:0051276,GO:0051336,GO:0051345,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0051960,GO:0051962,GO:0060191,GO:0060193,GO:0060229,GO:0060255,GO:0060284,GO:0060341,GO:0061912,GO:0061919,GO:0065007,GO:0065008,GO:0065009,GO:0070062,GO:0070647,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071396,GO:0071704,GO:0071840,GO:0072671,GO:0080090,GO:0090304,GO:0098693,GO:0098772,GO:0120035,GO:1900044,GO:1900045,GO:1901360,GO:1901564,GO:1901565,GO:1901568,GO:1901575,GO:1901700,GO:1901701,GO:1902914,GO:1902915,GO:1903320,GO:1903321,GO:1903421,GO:1903423,GO:1903561,GO:1903859,GO:1903861,GO:2000026,GO:2000145,GO:2000147,GO:2001222,GO:2001224
EggNOG free text desc.phospholipase A2 activator activity
EggNOG OGsKOG0301@1,KOG0301@2759
EC3.1.3.16,6.3.5.5
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size477
Cds size477
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931336.718779-CDS-H-elongata_contig94031:57..2731622931336.718779-CDS-H-elongata_contig94031:57..273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94031 58..273 +
1691679795.1728563-CDS-H-elongata_contig94031:57..2731691679795.1728563-CDS-H-elongata_contig94031:57..273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94031 58..273 +
1622931336.7326632-CDS-H-elongata_contig94031:803..10641622931336.7326632-CDS-H-elongata_contig94031:803..1064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94031 804..1064 +
1691679795.1923454-CDS-H-elongata_contig94031:803..10641691679795.1923454-CDS-H-elongata_contig94031:803..1064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94031 804..1064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94031.16836.1prot_H-elongata_contig94031.16836.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94031 58..1064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94031.16836.1

>prot_H-elongata_contig94031.16836.1 ID=prot_H-elongata_contig94031.16836.1|Name=mRNA_H-elongata_contig94031.16836.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
MTNQEFRSLTDHESGIRDLCKVEGGSPRYAAGSSKCLLPVAFCSASNDGT
VRAWSANGDCQGVFVIPGGCGVTGFVPDSGTPPLVDVATGSADHAVRVFT
PDPERALRGDSLKEAEEAAAGRVEEYKCSGRVSEVSSLPSVSEMGVMVGE
EDGQLSAFA
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mRNA from alignment at H-elongata_contig94031:58..1064+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94031.16836.1 ID=mRNA_H-elongata_contig94031.16836.1|Name=mRNA_H-elongata_contig94031.16836.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1007bp|location=Sequence derived from alignment at H-elongata_contig94031:58..1064+ (Himanthalia elongata Himel1 dioecious)
ATGACGAACCAGGAGTTTCGCAGTTTGACGGACCACGAGTCGGGCATCCG
CGACCTTTGCAAGGTCGAAGGGGGATCCCCTCGGTACGCCGCGGGGAGTT
CCAAGTGTCTCCTTCCGGTGGCGTTTTGCAGCGCGTCAAACGATGGCACC
GTGCGCGCGTGGAGCGCAAACGGCGACTGCCAAGGAGTGTTCGTGATTCC
CGGTGGGTGTGGGGTGGTTATGAATCGGGGGACCGCCGGGGGATTGGTGG
GGGCGGCTCTGCCCAAACAGAGCAAAGAGCCGACTGTATTTTTTGATCCC
ATCGCTGCTGTACATACATAAGGATTCACGTGCACGCACTGCATGCAGCT
TGTGTGACCAAGTTGTTATGGTATGCCAGAAGAAGTGCACCGAAGGTGGT
TGTTGACGCACATGCCTCCCCCCCCTCCTTTTTTATACGTTTGCGTGTAC
TCAGTTTTTTTATAGTGTCCCCATCCCCGCCCATCATATGTGTCTGATGG
GAACCCCTCGCCGTCGACACTCGCTACCCCATCTCCACAACAGACCAGAG
CTTCGTATTCAGCGTGCGGGATGTAGGCGACGGCTTGATCGTTTCCGGTG
ACGACGCCGGCAACCTCTGCGCCTTCCGCCTTCCGCCCTCCGGCTCAGCC
ACGCCTCCGTACACCAAGCACGCTTCCGTGCTGTACAAACACCCGAAGAC
CGTGTGGGCCGTGGTGGCGCTGCCGCGGCCGGATGGTAGGGGACAGACGG
GTTTCGTCCCCGATTCCGGAACGCCTCCCTTGGTGGACGTGGCCACGGGG
TCCGCCGACCACGCGGTCAGGGTCTTCACGCCCGATCCGGAGCGGGCCCT
TCGAGGCGATAGCTTGAAGGAGGCGGAGGAGGCCGCCGCTGGGCGGGTAG
AGGAATACAAGTGCTCGGGGAGAGTAAGCGAGGTGTCCTCCCTGCCGTCC
GTGTCAGAGATGGGCGTCATGGTGGGGGAAGAAGACGGGCAGCTAAGCGC
GTTCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig94031:58..1064+

>mRNA_H-elongata_contig94031.16836.1 ID=mRNA_H-elongata_contig94031.16836.1|Name=mRNA_H-elongata_contig94031.16836.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig94031:58..1064+ (Himanthalia elongata Himel1 dioecious)
ATGACGAACCAGGAGTTTCGCAGTTTGACGGACCACGAGTCGGGCATCCG
CGACCTTTGCAAGGTCGAAGGGGGATCCCCTCGGTACGCCGCGGGGAGTT
CCAAGTGTCTCCTTCCGGTGGCGTTTTGCAGCGCGTCAAACGATGGCACC
GTGCGCGCGTGGAGCGCAAACGGCGACTGCCAAGGAGTGTTCGTGATTCC
CGGTGGGTGTGGGGTGATGACGAACCAGGAGTTTCGCAGTTTGACGGACC
ACGAGTCGGGCATCCGCGACCTTTGCAAGGTCGAAGGGGGATCCCCTCGG
TACGCCGCGGGGAGTTCCAAGTGTCTCCTTCCGGTGGCGTTTTGCAGCGC
GTCAAACGATGGCACCGTGCGCGCGTGGAGCGCAAACGGCGACTGCCAAG
GAGTGTTCGTGATTCCCGGTGGGTGTGGGGTGACGGGTTTCGTCCCCGAT
TCCGGAACGCCTCCCTTGGTGGACGTGGCCACGGGGTCCGCCGACCACGC
GGTCAGGGTCTTCACGCCCGATCCGGAGCGGGCCCTTCGAGGCGATAGCT
TGAAGGAGGCGGAGGAGGCCGCCGCTGGGCGGGTAGAGGAATACAAGTGC
TCGGGGAGAGTAAGCGAGGTGTCCTCCCTGCCGTCCGTGTCAGAGATGGG
CGTCATGGTGGGGGAAGAAGACGGGCAGCTAAGCGCGTTCGCCACGGGTT
TCGTCCCCGATTCCGGAACGCCTCCCTTGGTGGACGTGGCCACGGGGTCC
GCCGACCACGCGGTCAGGGTCTTCACGCCCGATCCGGAGCGGGCCCTTCG
AGGCGATAGCTTGAAGGAGGCGGAGGAGGCCGCCGCTGGGCGGGTAGAGG
AATACAAGTGCTCGGGGAGAGTAAGCGAGGTGTCCTCCCTGCCGTCCGTG
TCAGAGATGGGCGTCATGGTGGGGGAAGAAGACGGGCAGCTAAGCGCGTT
CGCC
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