mRNA_H-elongata_contig94023.16834.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94023.16834.1
Unique NamemRNA_H-elongata_contig94023.16834.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig94023.16834.1 vs. uniprot
Match: D8LTJ6_ECTSI (Myosin IA, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTJ6_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 5.890e-59
Identity = 144/192 (75.00%), Postives = 161/192 (83.85%), Query Frame = 1 
Query:    1 LVPEQATFALLDEGRPKRWEARLTAGNPVVLHVPKHCADSGDIKMGKTKIFIKHPHTLFDLEDQRAPALFAVATIIQAKARGSICRWRYLKFQAVIGRVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEVAKGRPLRHYAIRIQRSYRGYRVRSKIPRRILAHARALGSSMLAASRNYQAA 576
            L   QATFALL+EGRPKRWE+  T G PV L+VP+ CADSGDIKMGKTKIFIK PHTLFDLEDQR PALFAVA IIQ+KARG + R RY++FQAVIGRVA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     K  AKGRPLR+YA+RIQR+YRGY+ RS +PRR L  ++ALG+ MLAASR Y+AA
Sbjct:  603 LSARQATFALLEEGRPKRWESHRTGGKPVTLNVPRLCADSGDIKMGKTKIFIKQPHTLFDLEDQRQPALFAVAVIIQSKARGFVRRSRYIRFQAVIGRVAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYKRLKIAAKGRPLRYYALRIQRNYRGYKGRSMVPRRTLKRSKALGAKMLAASRGYRAA 794
[Close]
BLAST of mRNA_H-elongata_contig94023.16834.1 vs. uniprot
Match: A0A6H5KZ38_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ38_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 7.310e-59
Identity = 146/192 (76.04%), Postives = 163/192 (84.90%), Query Frame = 1 
Query:    1 LVPEQATFALLDEGRPKRWEARLTAGNPVVLHVPKHCADSGDIKMGKTKIFIKHPHTLFDLEDQRAPALFAVATIIQAKARGSICRWRYLKFQAVIGRVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEVAKGRPLRHYAIRIQRSYRGYRVRSKIPRRILAHARALGSSMLAASRNYQAA 576
            L   QAT ALL+EGRPKRWE   T G PV L+VP+ CADSGDIKMGKTKIFIK PHTLFDLEDQR PAL+AVA IIQ+KARG + RWRY++FQAVIG+VA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  K  AKGRPLR+YA+RIQR+YRGY+ RS +PRR L  +RALG+ MLAASR Y+AA
Sbjct:  941 LSARQATVALLEEGRPKRWELHRTGGKPVTLNVPRLCADSGDIKMGKTKIFIKQPHTLFDLEDQRQPALYAVAVIIQSKARGFVRRWRYVRFQAVIGKVAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLKIAAKGRPLRYYALRIQRNYRGYKGRSMVPRRTLKRSRALGAKMLAASRGYRAA 1132
[Close]
BLAST of mRNA_H-elongata_contig94023.16834.1 vs. uniprot
Match: A0A835YR46_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR46_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.110e-17
Identity = 84/184 (45.65%), Postives = 108/184 (58.70%), Query Frame = 1 
Query:    1 LVPEQATFALLDEGRPKRWEARLTAGNPVVLHVPKHCADSGDIKMGKTKIFIKHPHTLFDLEDQRAPALFAVATIIQAKARGSICRWRYLKFQAVIGRVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEVAKGRPLRHYAIRIQRSYRGYRVRSKIPRRILAHARALGSSMLA 552
            L    A  ALL  G+PKRW+  LT G P+VL   K   DS ++ MG+TK+FI+HP TLF LE+Q A  L  VAT++Q   R    R  Y K  A   R       XXXXXXXXXXXXXXXXXXXXXXX          +   KG      A+++QR++RG+  R ++PR +L+    LG+S+LA
Sbjct:  838 LSDRDAVMALLSGGKPKRWDRGLTGGKPLVLPPLKVSLDSQEVVMGRTKVFIRHPDTLFALEEQWARTLAPVATLLQRCVRAYCRRRVYRKAVAAAPRAHALARGXXXXXXXXXXXXXXXXXXXXXXXRRQRCEYAELRVRFKGTTPCAEAMKLQRAWRGHAARGRLPRALLSRTLPLGASLLA 1021
[Close]
BLAST of mRNA_H-elongata_contig94023.16834.1 vs. uniprot
Match: UPI001AACB1BB (unconventional myosin-Ia isoform X1 n=2 Tax=Rana temporaria TaxID=8407 RepID=UPI001AACB1BB)

HSP 1 Score: 58.5 bits (140), Expect = 1.180e-6
Identity = 34/83 (40.96%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:   22 FALLDEGRPKRWEARLTAGNPVVLHVPKHCADSGDIKMGKTKIFIKHPHTLFDLEDQRAPALFAVATIIQAKARGSICRWRYL 270
            + LL      RWE    AG   VL+ PK      +I  G+TK+F++ P TLFDLE+ R   L  +AT+IQ   RG   R R+L
Sbjct:  642 YKLLSRVTWPRWEGDARAGVEAVLNDPKVSISKEEIAYGRTKVFVRTPKTLFDLEELRRQKLNELATLIQKIYRGWKQRKRFL 724
[Close]
BLAST of mRNA_H-elongata_contig94023.16834.1 vs. uniprot
Match: UPI001E276607 (unconventional myosin IC n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E276607)

HSP 1 Score: 58.2 bits (139), Expect = 1.580e-6
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:  124 DIKMGKTKIFIKHPHTLFDLEDQRAPALFAVATIIQAKARGSICRWRYLKFQ 279
            D KMGKTKIFI+HP TLF  EDQ       +A+IIQAK +G + R RYL+ +
Sbjct:  665 DYKMGKTKIFIRHPQTLFQTEDQFQEKKHDIASIIQAKWKGILQRRRYLRMR 716
[Close]
BLAST of mRNA_H-elongata_contig94023.16834.1 vs. uniprot
Match: A0A3Q0RVX7_AMPCI (Myosin ID n=3 Tax=Ovalentaria TaxID=1489908 RepID=A0A3Q0RVX7_AMPCI)

HSP 1 Score: 57.0 bits (136), Expect = 3.910e-6
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:   67 LTAGNPVVLHVPKHCADSGDIKMGKTKIFIKHPHTLFDLEDQRAPALFAVATIIQAKARGSICRWRYLKFQAVI 288
            L      V  + + C    D+  GKTK+FI+ P TLF+LEDQRA  +  +   +Q   RG+I R RY + +A +
Sbjct:  652 LPXDKDAVKRLLQGCGFDHDVAFGKTKVFIRTPRTLFNLEDQRAEMVQRIVLFLQKVWRGTIARMRYRRMRAAL 725
[Close]
BLAST of mRNA_H-elongata_contig94023.16834.1 vs. uniprot
Match: A0A195CLC6_9HYME (Myosin-IA n=11 Tax=Myrmicinae TaxID=34695 RepID=A0A195CLC6_9HYME)

HSP 1 Score: 56.2 bits (134), Expect = 7.140e-6
Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:  103 KHCADSGDIKMGKTKIFIKHPHTLFDLEDQRAPALFAVATIIQAKARGSICRWRYLKFQAVI 288
            KH +D  D+K G+TKIF++ P TLF+LE  R   +  V  ++Q + RG ICR +Y K +A +
Sbjct:  626 KHFSD--DVKYGRTKIFVRSPQTLFELEKMRNDLIPGVVILLQKQWRGYICRQKYKKMKAAL 685
[Close]
BLAST of mRNA_H-elongata_contig94023.16834.1 vs. uniprot
Match: UPI00188602F2 (unconventional myosin-Id n=2 Tax=Syngnathidae TaxID=72045 RepID=UPI00188602F2)

HSP 1 Score: 56.2 bits (134), Expect = 7.170e-6
Identity = 27/74 (36.49%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:   67 LTAGNPVVLHVPKHCADSGDIKMGKTKIFIKHPHTLFDLEDQRAPALFAVATIIQAKARGSICRWRYLKFQAVI 288
            L +    V  + + C    D+  GKTK+F++ P TLF+LE+QRA  L  +   +Q   RG+I R RY + +A +
Sbjct:  652 LPSDKEAVKKLLQGCRFDDDVAYGKTKVFVRTPRTLFNLEEQRAEVLLRIILFLQKIWRGTIARIRYRRMRAAL 725
[Close]
BLAST of mRNA_H-elongata_contig94023.16834.1 vs. uniprot
Match: A0A7M7T195_STRPU (Uncharacterized protein n=5 Tax=Echinacea TaxID=7674 RepID=A0A7M7T195_STRPU)

HSP 1 Score: 55.8 bits (133), Expect = 9.710e-6
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:  124 DIKMGKTKIFIKHPHTLFDLEDQRAPALFAVATIIQAKARGSICRWRYLKFQAV 285
            D+K GKTKIFI+ P T+  LE+ R   L A+AT +Q   RG++ RWR  K +A+
Sbjct:  683 DVKYGKTKIFIRTPRTIVQLEEARTRLLPALATFLQKLWRGTLARWRVKKIRAI 736
[Close]
BLAST of mRNA_H-elongata_contig94023.16834.1 vs. uniprot
Match: A0A8J9TC41_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9TC41_BRAAE)

HSP 1 Score: 55.8 bits (133), Expect = 9.730e-6
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:  121 GDIKMGKTKIFIKHPHTLFDLEDQRAPALFAVATIIQAKARGSICRWRYLKFQ 279
            GD +MGKTKIFI+HP TLFD ED        VA IIQA  +G + R R+LK +
Sbjct:  670 GDYQMGKTKIFIRHPKTLFDTEDAFQERKNFVAAIIQASWKGVVQRRRFLKMR 722
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94023.16834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D8LTJ6_ECTSI5.890e-5975.00Myosin IA, putative n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KZ38_9PHAE7.310e-5976.04Myosin motor domain-containing protein n=1 Tax=Ect... [more]
A0A835YR46_9STRA2.110e-1745.65P-loop containing nucleoside triphosphate hydrolas... [more]
UPI001AACB1BB1.180e-640.96unconventional myosin-Ia isoform X1 n=2 Tax=Rana t... [more]
UPI001E2766071.580e-655.77unconventional myosin IC n=1 Tax=Harmonia axyridis... [more]
A0A3Q0RVX7_AMPCI3.910e-637.84Myosin ID n=3 Tax=Ovalentaria TaxID=1489908 RepID=... [more]
A0A195CLC6_9HYME7.140e-643.55Myosin-IA n=11 Tax=Myrmicinae TaxID=34695 RepID=A0... [more]
UPI00188602F27.170e-636.49unconventional myosin-Id n=2 Tax=Syngnathidae TaxI... [more]
A0A7M7T195_STRPU9.710e-648.15Uncharacterized protein n=5 Tax=Echinacea TaxID=76... [more]
A0A8J9TC41_BRAAE9.730e-654.72Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94023contigH-elongata_contig94023:679..2457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.5
Seed ortholog evalue1.4e-51
Seed eggNOG ortholog2880.D8LTJ6
Preferred nameMYO19
KEGG rclassRC00005
KEGG koko:K00698,ko:K10352,ko:K10356,ko:K10357,ko:K17481
KEGG ReactionR02335
KEGG Pathwayko00520,ko04530,map00520,map04530
GOsGO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759,KOG0164@2759
EC2.4.1.16
COG Functional cat.Z
CAZyGT2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003,ko01009,ko03019,ko03029,ko03036,ko04131,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMyosin head, motor domain
Ec32 orthologEc-02_005850.1
Exons4
Model size576
Cds size576
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94023.16834.1prot_H-elongata_contig94023.16834.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94023 679..2457 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931336.4324615-CDS-H-elongata_contig94023:678..7891622931336.4324615-CDS-H-elongata_contig94023:678..789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94023 679..789 -
1691679795.0303829-CDS-H-elongata_contig94023:678..7891691679795.0303829-CDS-H-elongata_contig94023:678..789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94023 679..789 -
1622931336.4550776-CDS-H-elongata_contig94023:1233..13451622931336.4550776-CDS-H-elongata_contig94023:1233..1345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94023 1234..1345 -
1691679795.045643-CDS-H-elongata_contig94023:1233..13451691679795.045643-CDS-H-elongata_contig94023:1233..1345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94023 1234..1345 -
1622931336.472269-CDS-H-elongata_contig94023:1661..18821622931336.472269-CDS-H-elongata_contig94023:1661..1882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94023 1662..1882 -
1691679795.0576358-CDS-H-elongata_contig94023:1661..18821691679795.0576358-CDS-H-elongata_contig94023:1661..1882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94023 1662..1882 -
1622931336.484241-CDS-H-elongata_contig94023:2325..24571622931336.484241-CDS-H-elongata_contig94023:2325..2457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94023 2326..2457 -
1691679795.0668175-CDS-H-elongata_contig94023:2325..24571691679795.0668175-CDS-H-elongata_contig94023:2325..2457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94023 2326..2457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94023.16834.1

>prot_H-elongata_contig94023.16834.1 ID=prot_H-elongata_contig94023.16834.1|Name=mRNA_H-elongata_contig94023.16834.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp
LVPEQATFALLDEGRPKRWEARLTAGNPVVLHVPKHCADSGDIKMGKTKI
FIKHPHTLFDLEDQRAPALFAVATIIQAKARGSICRWRYLKFQAVIGRVA
AVARGFLARLRFHRLLEGVMLAQAAVRGKLQRARYLRLKEVAKGRPLRHY
AIRIQRSYRGYRVRSKIPRRILAHARALGSSMLAASRNYQAA
back to top

mRNA from alignment at H-elongata_contig94023:679..2457-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94023.16834.1 ID=mRNA_H-elongata_contig94023.16834.1|Name=mRNA_H-elongata_contig94023.16834.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1779bp|location=Sequence derived from alignment at H-elongata_contig94023:679..2457- (Himanthalia elongata Himel1 dioecious)
CTCGTTCCCGAACAGGCGACCTTCGCGCTTCTCGATGAAGGCCGACCAAA
GAGATGGGAGGCACGCCTTACCGCTGGAAACCCCGTCGTTCTTCACGTTC
CCAAGCACTGTGCTGACTCAGGGGATATCAAGGTAAAATAAATAAATAAT
ATAGGGTTTCTACGTAATAAAACAAAGCAATGAAAAAAATGCACGAAAGT
TAAAAGGACCTGAATTAGTTCCGCCACTGGCGGAACCAGTTGCGGTACTT
TTCACTTGATGCGTTCATTTTTTAATGCATTTTTTCATTACGTGGAAACC
CTATAATTAAGCTTCGAACTCGGAACACTGCCCCAACAGCAGCAATAGCA
GTTAACGTTGGCAGGGCGGGGTAGGGGGAGGGGGAGGGGGGTGGTCAAGC
AGAATTCATAGAGAGCAGAATAAAAATCAGCGCGTCCTCCCACCTAGGAA
TTATCACCGCGAGGCACATGATGCTGACTGACGATGCATTTTGTCTTTGT
TGGGATGTGAAGCGATAGTTCACGGACGTCGTCCTACCCCTATACCCTCC
CTTTTCCTTGACCCACACACATTAGATGGGCAAGACGAAAATCTTCATCA
AGCACCCTCACACGCTGTTCGACCTGGAGGACCAGCGGGCGCCGGCGCTC
TTCGCCGTGGCGACGATCATCCAGGCCAAGGCTCGGGGATCCATTTGCCG
TTGGAGGTACCTGAAGTTCCAGGCGGTGATCGGCCGGGTGGCCGCGGTCG
CGCGAGGGTTCCTGGCGCGGCTTCGGTTCCACCGTCTTCTGGAAGGGTGA
GGATCATCCACGGAAGGAGTTTATTCTTTATTTTGTTTTGCTTTTGCTTT
TAGGGAGGCGTGTGAGATGTCGCTGCAAGGCGTTCGGTGTTACTTATTTT
CCCTACTGTTGCAGTATCGATCGATATAATTCGTAAAGCGGCGATTAAGC
TTGCTAGCCAACTAGCCAGGCGCGGCCGCCTTTTGTTTCTTTTACTTGGT
TTTAGCATGAAACTGATAATGTGGTGAAACTGATAAAATTGCTGAGTAGT
CTGGTCTTTTTGTCGCGCTGTTTTTTTGTTTTTTTTTGCTGCCTTGCCTT
CGATCGGGACAGAGTGATGCTCGCCCAGGCAGCCGTGAGGGGGAAGCTGC
AGAGGGCACGCTACCTGAGGCTGAAGGAGGTCGCCAAGGGACGCCCCCTG
CGACACTACGCGATTCGAATACAGGTGAGACAGCCGCCTCACGACCTTCG
CGTGTACGAACGGTAAGAACCAATCAATTACTGGTTACGGATAATCCAAA
CAGCGCAACACAACACAGCACAGTACCTGGCGCGCAGTCGAGTGGGGTTA
TAATAGCGGGTTGCAGCTTCACCAATCCATCCCCTACCCAAACATGCCAA
CAGCAACCAGCAAAACATAACGGATTTGTGTAAGGATCTCGCGACTGTAC
GAGACGATGTAATAAAAAAAAAAGTGGAGGGGGGTTAGAGTGATTCACAT
CCGTGGGATGTGTGTTAAACACTAAATTGGAAACCCTGTGCTCTGTGTAA
TAAAATATACGGTACACGAGTCTTATCCTTGAAATAATCGCTGTCCGAGT
ATTTCTGAGCATCCTGCCCCTCATTTTGCCGCGAACCGATTCTGCGTGCT
GCCTTCTCGTGTGAACAGCGGAGTTACCGAGGATATCGCGTTCGCAGCAA
GATTCCCCGTCGAATTCTCGCCCACGCCCGTGCCCTCGGTAGTAGCATGT
TAGCCGCGTCGCGCAACTATCAGGCTGCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig94023:679..2457-

>mRNA_H-elongata_contig94023.16834.1 ID=mRNA_H-elongata_contig94023.16834.1|Name=mRNA_H-elongata_contig94023.16834.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at H-elongata_contig94023:679..2457- (Himanthalia elongata Himel1 dioecious)
CTCGTTCCCGAACAGGCGACCTTCGCGCTTCTCGATGAAGGCCGACCAAA
GAGATGGGAGGCACGCCTTACCGCTGGAAACCCCGTCGTTCTTCACGTTC
CCAAGCACTGTGCTGACTCAGGGGATATCAAGCTCGTTCCCGAACAGGCG
ACCTTCGCGCTTCTCGATGAAGGCCGACCAAAGAGATGGGAGGCACGCCT
TACCGCTGGAAACCCCGTCGTTCTTCACGTTCCCAAGCACTGTGCTGACT
CAGGGGATATCAAGATGGGCAAGACGAAAATCTTCATCAAGCACCCTCAC
ACGCTGTTCGACCTGGAGGACCAGCGGGCGCCGGCGCTCTTCGCCGTGGC
GACGATCATCCAGGCCAAGGCTCGGGGATCCATTTGCCGTTGGAGGTACC
TGAAGTTCCAGGCGGTGATCGGCCGGGTGGCCGCGGTCGCGCGAGGGTTC
CTGGCGCGGCTTCGGTTCCACCGTCTTCTGGAAGGATGGGCAAGACGAAA
ATCTTCATCAAGCACCCTCACACGCTGTTCGACCTGGAGGACCAGCGGGC
GCCGGCGCTCTTCGCCGTGGCGACGATCATCCAGGCCAAGGCTCGGGGAT
CCATTTGCCGTTGGAGGTACCTGAAGTTCCAGGCGGTGATCGGCCGGGTG
GCCGCGGTCGCGCGAGGGTTCCTGGCGCGGCTTCGGTTCCACCGTCTTCT
GGAAGGAGTGATGCTCGCCCAGGCAGCCGTGAGGGGGAAGCTGCAGAGGG
CACGCTACCTGAGGCTGAAGGAGGTCGCCAAGGGACGCCCCCTGCGACAC
TACGCGATTCGAATACAGAGTGATGCTCGCCCAGGCAGCCGTGAGGGGGA
AGCTGCAGAGGGCACGCTACCTGAGGCTGAAGGAGGTCGCCAAGGGACGC
CCCCTGCGACACTACGCGATTCGAATACAGCGGAGTTACCGAGGATATCG
CGTTCGCAGCAAGATTCCCCGTCGAATTCTCGCCCACGCCCGTGCCCTCG
GTAGTAGCATGTTAGCCGCGTCGCGCAACTATCAGGCTGCCCGGAGTTAC
CGAGGATATCGCGTTCGCAGCAAGATTCCCCGTCGAATTCTCGCCCACGC
CCGTGCCCTCGGTAGTAGCATGTTAGCCGCGTCGCGCAACTATCAGGCTG
CC
back to top