mRNA_H-elongata_contig9399.16832.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9399.16832.1
Unique NamemRNA_H-elongata_contig9399.16832.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig9399.16832.1 vs. uniprot
Match: D7FJG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG7_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 1.350e-53
Identity = 90/122 (73.77%), Postives = 104/122 (85.25%), Query Frame = 1 
Query:   28 QIISKRSTDLVVGEGGGADLPRRADMCINEIYDSALLGEGCLPALRHALADLLVDTPVMVPASAGIHGMLLNSASLRARHDLSTAKFSKEVPVARNARAAKCKGGRKAWPLQEAEVPDAAEL 393
            ++I+KRSTDL VGE G  DLPRRADMCINEIYDSALLGEGCLPA RHALA+LLVD PVMVPA A +HG+LL+S  LR+RHD+STA+FS+ VPVARN RAA C+GGR+A PLQ AE+ DA  L
Sbjct:   95 KVIAKRSTDLRVGESG--DLPRRADMCINEIYDSALLGEGCLPAFRHALANLLVDKPVMVPAGAEVHGVLLSSKFLRSRHDISTAEFSEGVPVARNPRAAACRGGRRALPLQGAELEDAVNL 214
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BLAST of mRNA_H-elongata_contig9399.16832.1 vs. uniprot
Match: A0A6H5KQS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQS2_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 3.770e-42
Identity = 82/122 (67.21%), Postives = 97/122 (79.51%), Query Frame = 1 
Query:   28 QIISKRSTDLVVGEGGGADLPRRADMCINEIYDSALLGEGCLPALRHALADLLVDTPVMVPASAGIHGMLLNSASLRARHDLSTAKFSKEVPVARNARAAKCKGGRKAWPLQEAEVPDAAEL 393
            ++++KRSTDL VGE G  DLPRRADMCINEIYDSALLGEGCLPA RHALA+LLV         A +HG+LL+S  LR+RHDLSTA+FS+ VPVARN RAA C+GGR+A PLQ AE+ DA  +
Sbjct:   37 KVVAKRSTDLSVGENG--DLPRRADMCINEIYDSALLGEGCLPAFRHALANLLVS-------GAEVHGVLLSSKFLRSRHDLSTAEFSEGVPVARNPRAAACRGGRRALPLQGAELEDAGTM 149
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BLAST of mRNA_H-elongata_contig9399.16832.1 vs. uniprot
Match: A0A367FU77_9ACTN (Uncharacterized protein n=1 Tax=Sphaerisporangium album TaxID=509200 RepID=A0A367FU77_9ACTN)

HSP 1 Score: 75.5 bits (184), Expect = 1.840e-13
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   31 IISKRSTDLVVGEGGGADLPRRADMCINEIYDSALLGEGCLPALRHALADLLVDTPVMVPASAGIHGMLLNSASL 255
            ++SKRSTDLVVG     DLPRRAD+ ++EI D  L+GEG LP + HA   LL    +++P SA ++G LL+S ++
Sbjct:  138 VVSKRSTDLVVG----VDLPRRADLIVSEIVDCGLIGEGVLPTVEHAREHLLAPGGLLLPESARLYGALLDSVAV 208
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BLAST of mRNA_H-elongata_contig9399.16832.1 vs. uniprot
Match: UPI00146C0FD4 (tetratricopeptide repeat protein n=1 Tax=Oceanospirillum beijerinckii TaxID=64976 RepID=UPI00146C0FD4)

HSP 1 Score: 71.6 bits (174), Expect = 5.990e-12
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:   31 IISKRSTDLVVGEGGGADLPRRADMCINEIYDSALLGEGCLPALRHALADLLVDTPVMVPASAGIHGMLLNSASL 255
            +I+KRST L VG+    D+ ++AD+ + EI DS LLGEG LP + HA  +LL D  +++P SA IH +L+ S SL
Sbjct:  343 VINKRSTSLQVGK----DIEQKADLLVCEILDSGLLGEGVLPTIYHARKNLLKDDAIIIPESADIHAVLIESDSL 413
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BLAST of mRNA_H-elongata_contig9399.16832.1 vs. uniprot
Match: UPI000A021C69 (50S ribosomal protein L11 methyltransferase n=1 Tax=Kitasatospora mediocidica TaxID=58352 RepID=UPI000A021C69)

HSP 1 Score: 69.7 bits (169), Expect = 2.290e-11
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   31 IISKRSTDLVVGEGGGADLPRRADMCINEIYDSALLGEGCLPALRHALADLLVDTPVMVPASAGIHGMLLNS 246
            +++KRST+LVVG+    DLP R D  I+EI D  L+GEG LP++RHA A+LL    V++P +A + G L+ S
Sbjct:  161 VLAKRSTELVVGQ----DLPDRVDAVISEIVDCGLIGEGLLPSVRHARAELLAPGGVLLPRTARVLGALVQS 228
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BLAST of mRNA_H-elongata_contig9399.16832.1 vs. uniprot
Match: UPI00166AF588 (tetratricopeptide repeat protein n=1 Tax=Terasakiella brassicae TaxID=1634917 RepID=UPI00166AF588)

HSP 1 Score: 67.8 bits (164), Expect = 1.220e-10
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:   31 IISKRSTDLVVGEGGGADLPRRADMCINEIYDSALLGEGCLPALRHALADLLVDTPVMVPASAGIHGMLLNSASLRARHDLST 279
            +I+K ST  V+G+    DLP++ D+ + EI+D AL+GEG LP++ HA A+LL     +VP  A ++G L+    L+  H + T
Sbjct:  202 VIAKHSTQAVLGQ----DLPQKCDVLVTEIFDRALVGEGALPSIAHAQAELLKPMARVVPQGARLYGALIECDHLQRFHHIET 280
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BLAST of mRNA_H-elongata_contig9399.16832.1 vs. uniprot
Match: A0A6J1PHA8_9HYME (Protein arginine N-methyltransferase n=5 Tax=Myrmicinae TaxID=34695 RepID=A0A6J1PHA8_9HYME)

HSP 1 Score: 64.7 bits (156), Expect = 1.640e-9
Identity = 29/76 (38.16%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:   28 QIISKRSTDLVVGEGGGADLPRRADMCINEIYDSALLGEGCLPALRHALADLLVDTPVMVPASAGIHGMLLNSASL 255
            ++I KRST ++VGEGG  D+P+RA++ + E++D+ L+GEG L   RHA   LL +  ++VP    +   ++ S  +
Sbjct:  134 KLIRKRSTKMIVGEGG--DMPKRANILVTEVFDTELIGEGALSTFRHAHEVLLEEDSIVVPHRGTVWAQVVESTKV 207
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BLAST of mRNA_H-elongata_contig9399.16832.1 vs. uniprot
Match: A0A1D3DTZ5_9ACTN (Uncharacterized protein n=2 Tax=Streptomyces thermolilacinus TaxID=285540 RepID=A0A1D3DTZ5_9ACTN)

HSP 1 Score: 63.5 bits (153), Expect = 3.040e-9
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:   31 IISKRSTDLVVGEGGGADLPRRADMCINEIYDSALLGEGCLPALRHALADLLVDTPVMVPASAGIHGMLLNSASLRARHDLSTA 282
            +I K ST L VG+    DL    D+ ++EI D  L+GEG LPA+RHA   LL    +M+P++A +HG L+ S ++   + ++TA
Sbjct:  114 VIGKPSTRLEVGQ----DLEAPVDVLVSEIVDCGLIGEGLLPAVRHAREHLLSPDGIMLPSAARLHGRLVTSDAVLKLNQVTTA 193
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BLAST of mRNA_H-elongata_contig9399.16832.1 vs. uniprot
Match: A0A2V3IW03_9FLOR (Protein arginine N-methyltransferase 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IW03_9FLOR)

HSP 1 Score: 63.9 bits (154), Expect = 3.060e-9
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 1 
Query:   85 LPRRADMCINEIYDSALLGEGCLPALRHALADLLVDTPVMVPASAGIHGMLLNSASLRARHDLSTAKFSKEVPVARNARAAKCKGGRKAWPL 360
            +P RAD+ + EI+DSALLGEGCL +++HA   LL     +VPA A + G+L+ S  L         K  +  P+ R+A  A C G     P+
Sbjct:  199 IPTRADILVTEIFDSALLGEGCLQSIQHAHNHLLQSKSTVVPAKAKVFGVLVKSDFLSRFF-----KLPRGFPIHRSADGANCMGNSIGIPI 285
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BLAST of mRNA_H-elongata_contig9399.16832.1 vs. uniprot
Match: A0A554GSJ1_9DELT (SAM-dependent methyltransferase n=1 Tax=Corallococcus sp. Z5C101001 TaxID=2596829 RepID=A0A554GSJ1_9DELT)

HSP 1 Score: 62.0 bits (149), Expect = 1.150e-8
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:   31 IISKRSTDLVVGEGGGADLPRRADMCINEIYDSALLGEGCLPALRHALADLLVDTPVMVPASAGIHGMLLNSASLRARHDLSTAK 285
            I+ KRS+ L +G+    DLP RAD+ + E  D  L+GEG LP +RHA A+LL +   ++PA A +   LL S+ +   H ++ AK
Sbjct:  130 IVPKRSSLLTLGQ----DLPARADLLVTETVDCGLVGEGLLPIIRHARAELLKEDARIIPARAKVFFSLLESSVI---HRINFAK 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9399.16832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJG7_ECTSI1.350e-5373.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQS2_9PHAE3.770e-4267.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A367FU77_9ACTN1.840e-1349.33Uncharacterized protein n=1 Tax=Sphaerisporangium ... [more]
UPI00146C0FD45.990e-1248.00tetratricopeptide repeat protein n=1 Tax=Oceanospi... [more]
UPI000A021C692.290e-1148.6150S ribosomal protein L11 methyltransferase n=1 Ta... [more]
UPI00166AF5881.220e-1039.76tetratricopeptide repeat protein n=1 Tax=Terasakie... [more]
A0A6J1PHA8_9HYME1.640e-938.16Protein arginine N-methyltransferase n=5 Tax=Myrmi... [more]
A0A1D3DTZ5_9ACTN3.040e-940.48Uncharacterized protein n=2 Tax=Streptomyces therm... [more]
A0A2V3IW03_9FLOR3.060e-939.13Protein arginine N-methyltransferase 7 n=1 Tax=Gra... [more]
A0A554GSJ1_9DELT1.150e-841.18SAM-dependent methyltransferase n=1 Tax=Corallococ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9399contigH-elongata_contig9399:6494..7420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.9
Seed ortholog evalue8e-43
Seed eggNOG ortholog2880.D7FJG7
Preferred namePRMT7
KEGG rclassRC00003,RC02120
KEGG koko:K11438
KEGG ReactionR11216
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0001650,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006325,GO:0006349,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006996,GO:0007276,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008380,GO:0008469,GO:0008757,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016071,GO:0016273,GO:0016274,GO:0016277,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018193,GO:0018195,GO:0018216,GO:0019219,GO:0019222,GO:0019538,GO:0019918,GO:0019919,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032504,GO:0034622,GO:0034641,GO:0034969,GO:0035241,GO:0035242,GO:0035243,GO:0035246,GO:0035247,GO:0036211,GO:0040029,GO:0042054,GO:0042393,GO:0043021,GO:0043046,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043414,GO:0043933,GO:0043985,GO:0044020,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0044728,GO:0044877,GO:0046483,GO:0048609,GO:0050789,GO:0050794,GO:0051098,GO:0051171,GO:0051252,GO:0051276,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0071514,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.peptidyl-arginine methylation, to symmetrical-dimethyl arginine
EggNOG OGsCOG0500@1,KOG1501@2759
EC2.1.1.321
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein arginine N-methyltransferase
Ec32 orthologEc-14_006300.1
Exons3
Model size399
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9399.16832.1prot_H-elongata_contig9399.16832.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9399 6494..7420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931336.2887821-CDS-H-elongata_contig9399:6493..66101622931336.2887821-CDS-H-elongata_contig9399:6493..6610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9399 6494..6610 +
1691679794.966636-CDS-H-elongata_contig9399:6493..66101691679794.966636-CDS-H-elongata_contig9399:6493..6610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9399 6494..6610 +
1622931336.3077872-CDS-H-elongata_contig9399:6868..69371622931336.3077872-CDS-H-elongata_contig9399:6868..6937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9399 6869..6937 +
1691679794.980521-CDS-H-elongata_contig9399:6868..69371691679794.980521-CDS-H-elongata_contig9399:6868..6937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9399 6869..6937 +
1622931336.3256774-CDS-H-elongata_contig9399:7207..74201622931336.3256774-CDS-H-elongata_contig9399:7207..7420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9399 7208..7420 +
1691679794.990689-CDS-H-elongata_contig9399:7207..74201691679794.990689-CDS-H-elongata_contig9399:7207..7420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9399 7208..7420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9399.16832.1

>prot_H-elongata_contig9399.16832.1 ID=prot_H-elongata_contig9399.16832.1|Name=mRNA_H-elongata_contig9399.16832.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MNAYRTLPRQIISKRSTDLVVGEGGGADLPRRADMCINEIYDSALLGEGC
LPALRHALADLLVDTPVMVPASAGIHGMLLNSASLRARHDLSTAKFSKEV
PVARNARAAKCKGGRKAWPLQEAEVPDAAELR*
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mRNA from alignment at H-elongata_contig9399:6494..7420+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9399.16832.1 ID=mRNA_H-elongata_contig9399.16832.1|Name=mRNA_H-elongata_contig9399.16832.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=927bp|location=Sequence derived from alignment at H-elongata_contig9399:6494..7420+ (Himanthalia elongata Himel1 dioecious)
ATGAATGCTTACCGCACTCTGCCCCGTCAGATTATCAGTAAGAGAAGCAC
CGACCTGGTTGTGGGAGAGGGGGGGGGAGCAGACCTTCCCCGACGTGCGG
ATATGTGTATCAACGAGGTAACCATTGCATGACGTCAGGCAGAGCGGGGC
GTCTCTCCCCCTCCCCTTCACGATACCCTGTGCTGTTTGGCAAAAATGAA
TTTTGCTGCAAATTGCCTCAGTCCCGTCTCGTGCGTGCTACAACGCCATA
TGTTTAGTTTGCTCCATGCAGAGAGAGAGAGAGAATAAAATCTGCCGCTG
ACCGAAGGCACACACACACACACACATGATTCCTCCCCCCCCGCCCTCGA
CTATACCCTTTGCACCGCGAAACAGATTTACGACTCAGCGCTCTTAGGTG
AAGGGTGTTTGCCTGCTCTACGGCATGCTCTGGCTGATCTCTTGGTGAGC
CTCGAGGCGAGGAGCGATCCGGTTGTCTGGGAGAAGAACCTGCCGCCGCC
GCCGCCGCTTTACCTCTTGATACAGAGATAAAAAAATAAGACTGGGGGGT
CGTATCACCCTCGTGTATATCATGGACCTAATTAATTTGAACTTGATGGA
GGTACGGTCGTCTATTAAAATGGAGATCCCCGTCGTGCCGAGGACCTCAC
TTCAAGCCTAGGGGAGTTCATTGCGAGATGACTCTCACCTCCACTACCCC
CCCCTTGCTGAAAGGTGGACACGCCTGTAATGGTTCCGGCAAGCGCCGGA
ATTCACGGCATGCTGCTGAACAGCGCATCCCTTCGCGCTCGGCATGATTT
ATCCACGGCAAAATTCAGCAAGGAGGTCCCCGTGGCGCGAAATGCGCGCG
CCGCGAAATGCAAAGGCGGGAGGAAGGCATGGCCCCTTCAGGAAGCCGAA
GTGCCAGATGCAGCCGAGCTCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig9399:6494..7420+

>mRNA_H-elongata_contig9399.16832.1 ID=mRNA_H-elongata_contig9399.16832.1|Name=mRNA_H-elongata_contig9399.16832.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig9399:6494..7420+ (Himanthalia elongata Himel1 dioecious)
ATGAATGCTTACCGCACTCTGCCCCGTCAGATTATCAGTAAGAGAAGCAC
CGACCTGGTTGTGGGAGAGGGGGGGGGAGCAGACCTTCCCCGACGTGCGG
ATATGTGTATCAACGAGATGAATGCTTACCGCACTCTGCCCCGTCAGATT
ATCAGTAAGAGAAGCACCGACCTGGTTGTGGGAGAGGGGGGGGGAGCAGA
CCTTCCCCGACGTGCGGATATGTGTATCAACGAGATTTACGACTCAGCGC
TCTTAGGTGAAGGGTGTTTGCCTGCTCTACGGCATGCTCTGGCTGATCTC
TTGATTTACGACTCAGCGCTCTTAGGTGAAGGGTGTTTGCCTGCTCTACG
GCATGCTCTGGCTGATCTCTTGGTGGACACGCCTGTAATGGTTCCGGCAA
GCGCCGGAATTCACGGCATGCTGCTGAACAGCGCATCCCTTCGCGCTCGG
CATGATTTATCCACGGCAAAATTCAGCAAGGAGGTCCCCGTGGCGCGAAA
TGCGCGCGCCGCGAAATGCAAAGGCGGGAGGAAGGCATGGCCCCTTCAGG
AAGCCGAAGTGCCAGATGCAGCCGAGCTCAGGTGAGTGGACACGCCTGTA
ATGGTTCCGGCAAGCGCCGGAATTCACGGCATGCTGCTGAACAGCGCATC
CCTTCGCGCTCGGCATGATTTATCCACGGCAAAATTCAGCAAGGAGGTCC
CCGTGGCGCGAAATGCGCGCGCCGCGAAATGCAAAGGCGGGAGGAAGGCA
TGGCCCCTTCAGGAAGCCGAAGTGCCAGATGCAGCCGAGCTCAGGTGA
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