mRNA_H-elongata_contig93913.16828.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93913.16828.1
Unique NamemRNA_H-elongata_contig93913.16828.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig93913.16828.1 vs. uniprot
Match: A0A6H5K0I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I6_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 1.240e-81
Identity = 196/375 (52.27%), Postives = 235/375 (62.67%), Query Frame = 1 
Query:    1 LRAWFDSTRRHRHTKAVLSRATRVLSSLEKQRTQRSFWAWRAAAELRSRRTVAISGACARLRSVRIRAGRLQLNSAFSLWARLSKADAHAEHTSKAAAATRRQKTLRTCLAALSRNAAMRRRGRRAIRSLDRALRLCRLARGWGAMAAAATADGVESRTRARLGTTEARVAKGRELARVRAHRTARRLLGVARGRAALEAFVAWRAYVRQGRGARLGARALAARSRRRFLRNTLTQWREQSLVSSRLRARARARLSAATMGIVAQAFQRWRV--RAAHDRAKERAIAALEGVCGRRRSDQAGKLLALRTWRRNACSEKIDSLGDAHKESRTVEGVGESGEWGSEALEVLAGVAVEATGAFSLASSVRTVADTKED 1119
            LRAW +  RR R   A   RA R + SLEK++   +F AWR AA   +RR   ISGACARLR+VR R GRLQL S+FS+WARLS A +H++  ++ AA  +RQ+ +RTC + L  NA++R+R RRA+ SLDR   L +LARGWGAM  AA     E R+  RL   EA VA GR   R RAHRTARRLLGVARGRAALEAFVAWR  VR+GRGARLGA ALAAR            WR ++  SSRLR+RA +R+S A  G+V++AF  WR   R AH +AK  A+ AL     RRRSD+A   LALRTW RNAC    D  G    +     G  E G      LE +AGV VEA  AFS ASS+  V    ED
Sbjct:  427 LRAWSEGARRRRRFAATFWRAARAVRSLEKRQQHVAFLAWRVAAVNETRRAADISGACARLRAVRKRPGRLQLASSFSIWARLSAASSHSDRHAEIAACAKRQRAVRTCFSTLRSNASLRQRTRRALSSLDRRCSLSQLARGWGAMLRAAATASAERRSGLRLSRAEAAVAAGRLATRARAHRTARRLLGVARGRAALEAFVAWRGLVREGRGARLGAAALAAR------------WRGEARASSRLRSRALSRISQAAQGLVSEAFSTWREGSRIAHGKAK--ALTALARASDRRRSDRAEMRLALRTWTRNACGGDGDGGGRRSGDGEPRGGGMEDG------LEAVAGVFVEAAAAFSTASSIPEVFTLVED 781
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BLAST of mRNA_H-elongata_contig93913.16828.1 vs. uniprot
Match: D7FQ01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ01_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 1.280e-64
Identity = 172/373 (46.11%), Postives = 204/373 (54.69%), Query Frame = 1 
Query:    1 LRAWFDSTRRHRHTKAVLSRATRVLSSLEKQRTQRSFWAWRAAAELRSRRTVAISGACARLRSVRIRAGRLQLNSAFSLWARLSKADAHAEHTSKAAAATRRQKTLRTCLAALSRNAAMRRRGRRAIRSLDRALRLCRLARGWGAMAAAATADGVESRTRARLGTTEARVAKGRELARVRAHRTARRLLGVARGRAALEAFVAWRAYVRQGRGARLGARALAARSRRRFLRNTLTQWREQSLVSSRLRARARARLSAATMGIVAQAFQRWRVRAAHDRAKERAIAALEGVCGRRRSDQAGKLLALRTWRRNACSEKIDSLGDAHKESRTVEGVGESGEWGSEALEVLAGVAVEATGAFSLASSVRTVADTKED 1119
            LRAW +  RR R   A   RA R + SLEK++   +F AWR AA   +RR   ISGACARLR+VR R GRLQL SAFS+WARLS A +H++  ++ AA T+RQ+ +RTC + L  NA++RRR RRA+ SLDR   L +LARGWGAM  AA     E R+  RL   EA VA GR   R RAHRTARRLLGVARGRAALEAFVAWR  VR+GRGARLGA AL                                                 R  +     K +A+ AL     RR+SD+A   LALRTWRRNAC    D  G               G   ++ LE +AG  VEA  AFS ASS+  V    ED
Sbjct:   58 LRAWSEGARRRRRFAATFWRAARAVRSLEKRQQHGAFLAWRVAAVNETRRAADISGACARLRAVRKRPGRLQLASAFSIWARLSAASSHSDRHAEIAACTKRQRAVRTCFSTLRSNASLRRRARRALFSLDRRCSLRQLARGWGAMLRAAATASAERRSGLRLSRAEAAVAAGRLATRTRAHRTARRLLGVARGRAALEAFVAWRGLVREGRGARLGAAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREGSRQAHGKAKALTALARASDRRQSDRAEMRLALRTWRRNACGGDGDGGGGRXXXXEP------RGGGMADGLEAMAGAFVEAAAAFSTASSIPEVFTLVED 424
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93913.16828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0I6_9PHAE1.240e-8152.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ01_ECTSI1.280e-6446.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93913contigH-elongata_contig93913:63..2035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_008000.1
Exons3
Model size1128
Cds size1128
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93913.16828.1prot_H-elongata_contig93913.16828.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93913 63..2035 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931335.8883724-CDS-H-elongata_contig93913:62..5191622931335.8883724-CDS-H-elongata_contig93913:62..519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93913 63..519 -
1691679794.8312922-CDS-H-elongata_contig93913:62..5191691679794.8312922-CDS-H-elongata_contig93913:62..519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93913 63..519 -
1622931335.905562-CDS-H-elongata_contig93913:925..13911622931335.905562-CDS-H-elongata_contig93913:925..1391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93913 926..1391 -
1691679794.839986-CDS-H-elongata_contig93913:925..13911691679794.839986-CDS-H-elongata_contig93913:925..1391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93913 926..1391 -
1622931335.9223435-CDS-H-elongata_contig93913:1830..20351622931335.9223435-CDS-H-elongata_contig93913:1830..2035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93913 1831..2035 -
1691679794.849127-CDS-H-elongata_contig93913:1830..20351691679794.849127-CDS-H-elongata_contig93913:1830..2035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93913 1831..2035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93913.16828.1

>prot_H-elongata_contig93913.16828.1 ID=prot_H-elongata_contig93913.16828.1|Name=mRNA_H-elongata_contig93913.16828.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=376bp
LRAWFDSTRRHRHTKAVLSRATRVLSSLEKQRTQRSFWAWRAAAELRSRR
TVAISGACARLRSVRIRAGRLQLNSAFSLWARLSKADAHAEHTSKAAAAT
RRQKTLRTCLAALSRNAAMRRRGRRAIRSLDRALRLCRLARGWGAMAAAA
TADGVESRTRARLGTTEARVAKGRELARVRAHRTARRLLGVARGRAALEA
FVAWRAYVRQGRGARLGARALAARSRRRFLRNTLTQWREQSLVSSRLRAR
ARARLSAATMGIVAQAFQRWRVRAAHDRAKERAIAALEGVCGRRRSDQAG
KLLALRTWRRNACSEKIDSLGDAHKESRTVEGVGESGEWGSEALEVLAGV
AVEATGAFSLASSVRTVADTKEDVP*
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mRNA from alignment at H-elongata_contig93913:63..2035-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93913.16828.1 ID=mRNA_H-elongata_contig93913.16828.1|Name=mRNA_H-elongata_contig93913.16828.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1973bp|location=Sequence derived from alignment at H-elongata_contig93913:63..2035- (Himanthalia elongata Himel1 dioecious)
CTTCGAGCTTGGTTCGATTCCACAAGACGCCATCGTCACACAAAAGCCGT
CCTTTCGCGCGCCACGCGAGTCTTGTCGAGCCTCGAGAAACAGCGTACCC
AGCGGTCGTTTTGGGCGTGGAGGGCAGCGGCCGAGCTGCGCTCTAGGAGG
ACCGTGGCCATCAGTGGCGCTTGCGCAAGGCTCCGGAGTGTAAGGATTCG
TGCAGGTGCGAAACATGTGCGCACCGGCGTATGACCTGTTGCTTTTGTTA
TTGTAGTTAAACAAACCCGTTTGATATACCGGCAAACCAATATATTGCAC
CGTACAGCACATAAAATTTAGTATAAACACTGGTATTATTTGTTTTTGTT
TATTTATGCCATTATCGTTGCGTACTGATGATCGCGGCGACCTACCTTTT
ATGATGTACGTGTTCAGCACCAGTATTTTTTTTAAATGTATTGTGTGCGC
AGCCCCAGGACACCCCGCCAAAGTGGCGCGCGCCAGATAGGTCGATTTGA
AATGGGTCGATCATATCGCTTGTTCAAAAGCGCCAACACTAACGACAAGG
CAGGGATAGCCCCACCCCTTCACAAGCGCACACACTTCAGAAAATCCGTT
TTCTCACTCCGCTACAACACACACCCAATTTGTCCGCGTACAAGGCCGAT
TGCAACTGAACAGCGCCTTCAGTCTCTGGGCGCGACTCTCCAAGGCCGAT
GCCCACGCCGAGCATACATCCAAGGCGGCGGCGGCGACCAGGCGGCAAAA
AACCCTCCGCACGTGCCTCGCGGCTCTTTCTCGAAACGCCGCAATGCGGC
GCCGTGGCCGTCGGGCCATCCGCTCTCTGGACCGCGCACTGCGCCTGTGC
CGACTGGCCAGGGGCTGGGGTGCAATGGCCGCGGCAGCGACGGCAGATGG
GGTGGAAAGCAGGACGCGGGCGCGTCTGGGCACTACCGAAGCTCGAGTGG
CCAAGGGGAGAGAGTTGGCACGCGTGCGGGCGCACAGGACGGCGAGGAGG
TTGCTCGGCGTTGCGAGGGGTCGCGCTGCGCTGGAAGCGTTCGTGGCTTG
GAGGGCGTATGTGAGGCAGGGGCGCGGGGCGAGGTTGGGAGCACGCGCCC
TCGCTGCGAGGTGAAAAGCGAGACGATGCTCCTCGTCATCTTAATAGTAA
ATGTTGCTACATGAAACTGCATGTAAAGTTATGCATACTGATGTATCACA
ATGGGCTAAATCTACCGAATGAGGTGTTGATATTTATGTGCGACAGTTCT
TCCGTACGTGGGTGGTTGTCTTCTTTCCTTGGCCAGTCAGTAACCTTCAC
AGTCTTGCGCTAAAATCTCTCTAATATTATCATCATCGGCGTCCTTGGTT
TGTTTTATCGCCCGATCCGTCCTTACCCTCGCCTGGAGCCTCGGAGAAAA
AACGCCCTTAGGACCGTCAGTCTTGAACCTTTGCATCCCTTCTTCGCTGC
CTTCGCTCCTCGGGACACCCCTTTTCCCCATCAAATACATCATCGCCGCG
GTGTTCGTTTACACAGATCGAGGCGAAGGTTCTTGCGAAACACCCTCACA
CAGTGGCGGGAGCAGAGCCTCGTCTCCTCGCGGCTCCGCGCGCGCGCGCG
TGCTCGTCTGTCCGCAGCCACCATGGGGATCGTTGCACAGGCGTTCCAGC
GGTGGCGTGTGCGGGCGGCGCACGACCGCGCGAAGGAAAGGGCCATCGCG
GCCTTGGAAGGGGTTTGTGGGCGCAGGCGTTCTGACCAGGCGGGGAAGCT
TTTGGCACTGCGCACGTGGAGGCGGAACGCATGCAGTGAAAAAATTGACT
CTTTGGGCGACGCCCACAAAGAAAGTCGAACAGTCGAGGGGGTGGGAGAA
TCAGGGGAGTGGGGTTCGGAGGCGTTGGAAGTGCTGGCGGGAGTTGCGGT
GGAGGCGACGGGAGCGTTTTCATTGGCGAGCTCGGTGAGGACCGTGGCAG
ACACAAAGGAGGATGTGCCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig93913:63..2035-

>mRNA_H-elongata_contig93913.16828.1 ID=mRNA_H-elongata_contig93913.16828.1|Name=mRNA_H-elongata_contig93913.16828.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2256bp|location=Sequence derived from alignment at H-elongata_contig93913:63..2035- (Himanthalia elongata Himel1 dioecious)
CTTCGAGCTTGGTTCGATTCCACAAGACGCCATCGTCACACAAAAGCCGT
CCTTTCGCGCGCCACGCGAGTCTTGTCGAGCCTCGAGAAACAGCGTACCC
AGCGGTCGTTTTGGGCGTGGAGGGCAGCGGCCGAGCTGCGCTCTAGGAGG
ACCGTGGCCATCAGTGGCGCTTGCGCAAGGCTCCGGAGTGTAAGGATTCG
TGCAGCTTCGAGCTTGGTTCGATTCCACAAGACGCCATCGTCACACAAAA
GCCGTCCTTTCGCGCGCCACGCGAGTCTTGTCGAGCCTCGAGAAACAGCG
TACCCAGCGGTCGTTTTGGGCGTGGAGGGCAGCGGCCGAGCTGCGCTCTA
GGAGGACCGTGGCCATCAGTGGCGCTTGCGCAAGGCTCCGGAGTGTAAGG
ATTCGTGCAGGCCGATTGCAACTGAACAGCGCCTTCAGTCTCTGGGCGCG
ACTCTCCAAGGCCGATGCCCACGCCGAGCATACATCCAAGGCGGCGGCGG
CGACCAGGCGGCAAAAAACCCTCCGCACGTGCCTCGCGGCTCTTTCTCGA
AACGCCGCAATGCGGCGCCGTGGCCGTCGGGCCATCCGCTCTCTGGACCG
CGCACTGCGCCTGTGCCGACTGGCCAGGGGCTGGGGTGCAATGGCCGCGG
CAGCGACGGCAGATGGGGTGGAAAGCAGGACGCGGGCGCGTCTGGGCACT
ACCGAAGCTCGAGTGGCCAAGGGGAGAGAGTTGGCACGCGTGCGGGCGCA
CAGGACGGCGAGGAGGTTGCTCGGCGTTGCGAGGGGTCGCGCTGCGCTGG
AAGCGTTCGTGGCTTGGAGGGCGTATGTGAGGCAGGGGCGCGGGGCGAGG
TTGGGAGCACGCGCCCTCGCTGCGAGGCCGATTGCAACTGAACAGCGCCT
TCAGTCTCTGGGCGCGACTCTCCAAGGCCGATGCCCACGCCGAGCATACA
TCCAAGGCGGCGGCGGCGACCAGGCGGCAAAAAACCCTCCGCACGTGCCT
CGCGGCTCTTTCTCGAAACGCCGCAATGCGGCGCCGTGGCCGTCGGGCCA
TCCGCTCTCTGGACCGCGCACTGCGCCTGTGCCGACTGGCCAGGGGCTGG
GGTGCAATGGCCGCGGCAGCGACGGCAGATGGGGTGGAAAGCAGGACGCG
GGCGCGTCTGGGCACTACCGAAGCTCGAGTGGCCAAGGGGAGAGAGTTGG
CACGCGTGCGGGCGCACAGGACGGCGAGGAGGTTGCTCGGCGTTGCGAGG
GGTCGCGCTGCGCTGGAAGCGTTCGTGGCTTGGAGGGCGTATGTGAGGCA
GGGGCGCGGGGCGAGGTTGGGAGCACGCGCCCTCGCTGCGAGATCGAGGC
GAAGGTTCTTGCGAAACACCCTCACACAGTGGCGGGAGCAGAGCCTCGTC
TCCTCGCGGCTCCGCGCGCGCGCGCGTGCTCGTCTGTCCGCAGCCACCAT
GGGGATCGTTGCACAGGCGTTCCAGCGGTGGCGTGTGCGGGCGGCGCACG
ACCGCGCGAAGGAAAGGGCCATCGCGGCCTTGGAAGGGGTTTGTGGGCGC
AGGCGTTCTGACCAGGCGGGGAAGCTTTTGGCACTGCGCACGTGGAGGCG
GAACGCATGCAGTGAAAAAATTGACTCTTTGGGCGACGCCCACAAAGAAA
GTCGAACAGTCGAGGGGGTGGGAGAATCAGGGGAGTGGGGTTCGGAGGCG
TTGGAAGTGCTGGCGGGAGTTGCGGTGGAGGCGACGGGAGCGTTTTCATT
GGCGAGCTCGGTGAGGACCGTGGCAGACACAAAGGAGGATGTGCCGTAAA
TCGAGGCGAAGGTTCTTGCGAAACACCCTCACACAGTGGCGGGAGCAGAG
CCTCGTCTCCTCGCGGCTCCGCGCGCGCGCGCGTGCTCGTCTGTCCGCAG
CCACCATGGGGATCGTTGCACAGGCGTTCCAGCGGTGGCGTGTGCGGGCG
GCGCACGACCGCGCGAAGGAAAGGGCCATCGCGGCCTTGGAAGGGGTTTG
TGGGCGCAGGCGTTCTGACCAGGCGGGGAAGCTTTTGGCACTGCGCACGT
GGAGGCGGAACGCATGCAGTGAAAAAATTGACTCTTTGGGCGACGCCCAC
AAAGAAAGTCGAACAGTCGAGGGGGTGGGAGAATCAGGGGAGTGGGGTTC
GGAGGCGTTGGAAGTGCTGGCGGGAGTTGCGGTGGAGGCGACGGGAGCGT
TTTCATTGGCGAGCTCGGTGAGGACCGTGGCAGACACAAAGGAGGATGTG
CCGTAA
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